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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79612_cuf0 >transcript:BL79612_cuf0-protein ID=transcript:BL79612_cuf0-protein|Name=transcript:BL79612_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=160bp
MRTLLVVLLVCALVWESEAWFRRRRRRTSSNCGSPPSGTGVSRWSCNWPF
QHGETCNFRCRSGYTYVSGSAVRTCNNGAWSGATYVCAQQQRDCSAPFKG
KGVSRSGCFWRYRHGETCTFSCRRRYTYVSGSSVRTCNNGAWSGDNYFCE
KENGWLFGRK Run BLAST on NCBI mRNA from alignment at Sc0000033:74625..78911+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79612_cuf0 ID=transcript:BL79612_cuf0|Name=transcript:BL79612_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4287bp|location=Sequence derived from alignment at Sc0000033:74625..78911+ (Branchiostoma lanceolatum)
AGCTAAGTAATTTTTGTTGTTCTTGTTGGTGTATACTGACTCGGTCAGTC
AAAGGAAAACCTCCTTGGTCGGTCGTCGCCCTTCTGATGGTACCACCCTG
CATTGCGTGAGAGAGACGACAAAAACAACGTACCCCAAATAACAGACCCA
CCCATGAAAAAGTTTGGGGACTATACCGCGGTCATGCATATTCATGACAA
CACAATGGAAACGTCACGTATCTCATGAATATTCACAACCAGAAGTCAGG
TGAGTGAACGTGAACAATAGCAGTCTTTATATGTAGATATGATATCATGC
TTTCTTTACCAAGAACCCAATTATCTTTGTCAAAAAGACTATATTAATAA
CCCACAGGTGTGTTACGCCTCAGTCTGACTCCACTGCTACTGAAAACGTG
TTGTCCAAGTGCGCACCAACATGAGGTGAGATGCCATGCAGTACATAGAA
TGTTTAAGTAAAACTGTCAAATATTTGGGGAGTGATAATTCGACTGGTGA
GAGGTTGGGAAATATTCATATTGATTTGGCGGTATTTTTTTGAGGGGGGA
AATAGCCACAAAAAGAGTAACGGAAAAATGTTTGTCCTGCGGTACTTTTT
GCTACGGACAATAACAGCAGTATGTATGGTTATATCTTAAACTGAATTTA
ATGTTCTGTTAGATTTTCAGTCGTCAATAGTTTTGAAAAAAAAGCAATTA
TTGAAAATGTATCGAGCACAAACGCTTTGTGTTGCGTTACATATCATATA
ACGTTACGCGATGCGTTTGTAGCTTTGTTTTAATTCTGACAATCCGCGTT
GTTTCCACCTCCAGGACTTTGTTGGTTGTACTGCTTGTTTGCGCCCTCGT
CTGGGAGTCAGAGGCATGGTTCCGTCGTCGTCGTCGACGTACCTCCTCAA
GTAAGCGATGCCACAACCATGTGGCATTTGGAATTTTAAATTAGATTAAT
TTTTTGATAAAATCAGCCTTGTGGACATTGTCTAAATTGAGCTGAATAAC
TGTGCTAGCTTTGGTGCAACGTTGCCTCTAGGTACATATAAGGCATAGCT
GGAATCATACATAATTATGAACACCATAGAATTAAAAAGCTGACAGCTAT
CAAGTTAAGCAGAATTTCGGTAACTTACATGTAGCTTGAAGCAGGCTTAC
GCAATCTTATGGTTTCTACTATGTGTTTTTTTTTTTCAATTCTACATTAA
GACTGTGGCTCCCCACCGAGCGGGACGGGCGTGAGCCGTTGGAGCTGCAA
CTGGCCATTCCAACACGGAGAGACCTGCAATTTCCGTTGCAGGAGTGGCT
ACACCTATGTGAGCGGCAGCGCCGTTAGGACGTGCAACAACGGGGCGTGG
AGCGGAGCTACATACGTTTGCGCACAACAACAACGAGGTGCGTTCACTTA
GTTCAATGTCGTTTTCTTAATCTTTTATTTTCGGCACAGCATATACTTAA
TGAATGGGGATAACTTTATCTGTCATAATTTCATAGTCTGTTGCAAGAGA
GAACACTGGATATAGGCCGGTTCCAGAAGATACTGAGAACAGTACGCAGT
GAACATCCCAAATCAACGTAATGGTAACGGTACCGGTATTAAACTTGCTG
TAGTCAGGGGAACTGTAAAAGTAATCTCTGCCATGTGGTTGGTACTGACC
AAAATCTATGCTTGACAGCTTGTGGTTATAAATTTCCTAATTTAGTTTTG
ATCCTGTCAGACTTCTGGGAACAAGTACACAGCAACAAAACAAGACACTA
ACCTTTAGAAGCATTCCTTTTATAGACAATACAGAGGGGTACTTCTGATA
AAAGATTGAAATCCAAAAACATCCTACTTTGACATTTTCAAAGCTTCAAA
CATAGCCCAAAATGTTAATTTCCACATACACAGCAACGAAGCAAGATATC
TACCTTTACAGGCGTTCATTTTATAAACCATACATAGGGTTACCTTTGAC
ATTACCTTTGATAGGGGCTTTAGGCATAGCTGGAATCACACAGAATTATA
TGATCAGCATAGAATTAACGGACTTACAGCTCTTAATGTTTGCAACATTT
CCGCAACTTAGCTTGAAGCAGCCGGAAGTAATCCTATGTTGGTATTGACT
CACAACAGGCACAGTTAAACATTTGAGATGTTTGAGTTTCTATCTTTTTT
TTTTATTCCACATTAAGATTGTAGCGCCCCATTCAAGGGGAAGGGCGTGA
GCCGTAGTGGCTGCTTTTGGCGTTACCGACACGGAGAGACCTGCACATTC
AGTTGCAGGAGACGCTACACCTATGTGAGCGGCAGCTCCGTTAGGACGTG
CAACAACGGGGCGTGGAGCGGAGATAATTACTTTTGCGAAAAAGGTACGT
GCACTCAGATCAATGCCGTTTTCCGCATCTTTCCTGCTTTTATTTTGTTT
TTCGGTACAGCATAGACTTAATTTATGGGGTGAAGTTTTTTCTGTCATAG
AAATAAGGACTATGGATATAGACCGACTCCTGTGAACGATATACTGTGAA
CACTATGCAGTGAATCTAAAACGACTAGCTCAAACAAACTTTGTGGTAAG
CTGCTGAACGGTATTAAACGTACTGTAGTTAGGGGAACTGGGGAAATAGA
CTCGACAGTGTGGTTGGTACAGCCCATGATCACTGTGTGTGGTTTAATTT
TCTAATTAGTCTTGATCGTGCTCGACTGACAAAATTGTGATTGTTTCCTT
CCGCAAATGCCAACAGGTATGCTTTTTAATCAGCTAAGTGTTCAGATGTA
CCAGATATTTCCATGCAGTTTGCTTACTTTCCAGTTTTTCCAGTTCCACA
AATCCGGTTAGACAAAAGTGGATTCAAACGACTCAAACGTGCATTCAAAC
AGTTCTCTACTTAGAGTAATTATATCCAACAGTAGGTAAAATATTTCAAT
CACTTTGATATATATTTACCCTTTATTCAGAAAACGGCTGGCTTTTTGGT
CGTAAGTAGTGCTTACACCGCAGTCAGCTGTGAGGACAACTGCGACAACA
ATACTGTTGAAGATAGCTGACCCCGGAGCACCTGGAATCATAGAATGTAG
AATGCAACTATTACAATATGTTTCGAGCTGTAGTGGATAAGGTTAGTACT
AGCGTTGGATTCAAAGGGGATATCTTGTGCTTCCATTTCATCTTGCTCAA
TATTTTGTTCAAATTGTTAGGGTGGTCTTTTGAAGAGCTTTGTGTCTTAT
AATGCACACCACCAACTATGTAGAATTTTTTCAAATGAAAAAGCAGCAAT
TTAGTTGATAGTAAGTAATATATAGTGGTATGTGCGTTTTCTACTTTGTA
GTTTTGAAGCTTAAGACCCTTAAGCTGCCAGTCCCGACTTAATTAGGGAT
ACAGAAATATGCCTTGTGTGCTGGACCCGGTTATAACCGGGATAGGGTAT
TCCCCAGAACAAAACAGCTTTGCGTGCGTGTAGCGCGCGAAGCCGGGAAG
TTAGGGGAGTTAGCGCCGCCGGGTGTTTCGCGGGTTTCGTGAGGGAGGTC
AGGGGTCAAACATTTTTTATTTTTACTTGGCTAAAAAACCTGGCAGCTTA
AGGGTTAATGCTCAAAGCAATTATTGTTCTGATATTGCTACATTCTATTT
ATTTGAGAAACTGCAGTAGTTAATGCTAGACTTTTGCATTAAAAAGATGT
AGTCCGTGAACGTATGGGACTTTCAGATGGAATTGGTTGTAGCTAAATGT
TATTTCCATAGAATTTGAGATAATGAGAACAGGCGTAGTAGAAATAAATG
TAGAATAAGTGGAAGTAAAAACGCAGCAAGCTTTATAGCTACTCCTACTT
GATATAAACTTCTCTGTACTGCTGTGGCCTTGCAAATAAATTGGTAACGA
GAGACTCGTCTGATGTGACATCTTTCACAACAGTATTAGTCAGTAATGTG
TTGAAAAAGAGAAATAATGGGCAAGTCAAAGTTGTGATAACTGAAACAAG
CATGGTATTTCAGTGCTACTAACATAATCACTGCTATGAGATATTACGTG
ACAATTCCAACCCCTTAGCAACATAATCAAAAGTCGAGGTCAGCCATTCT
TCAATGTTTACTCAAAACAACATTGTTTGTTTTAAAGTAAGTGCACCTAC
CTTAGCAGGCAACATATTCTTTTTCAAAGTATCAGAAACAGTAATGATCC
GTGTTCAGACTACCCGCATTTATTTCACTAGGAGTGAACGGGGCACGCGC
TCATTCTCGTAAACAAGTATCTAATCGATCGACACAAAAGGTCGAGGGTC
AAATAGTTTCGCCTCGTTGTCCTGTGGTTGCCTTCGG Coding sequence (CDS) from alignment at Sc0000033:74625..78911+ >transcript:BL79612_cuf0 ID=transcript:BL79612_cuf0|Name=transcript:BL79612_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2415bp|location=Sequence derived from alignment at Sc0000033:74625..78911+ (Branchiostoma lanceolatum)
ATGAGGACTTTGTTGGTTGTACTGCTTGTTTGCGCCCTCGTCTGGGAGTC
AGAGGCATGGTTCCGTCGTCGTCGTCGACGTACCTCCTCAAACTGTGGCT
CCCCACCGAGCGGGACGGGCGTGAGCCGTTGGAGCTGCAACTGGCCATTC
CAACACGGAGAGACCTGCAATTTCCGTTGCAGGAGTGGCTACACCTATGT
GAGCGGCAGCGCCGTTAGGACGTGCAACAACGGGGCGTGGAGCGGAGCTA
CATACGTTTGCGCACAACAACAACGAGATTGTAGCGCCCCATTCAAGGGG
AAGGGCGTGAGCCGTAGTGGCTGCTTTTGGCGTTACCGACACGGAGAGAC
CTGCACATTCAGTTGCAGGAGACGCTACACCTATGTGAGCGGCAGCTCCG
TTAGGACGTGCAACAACGGGGCGTGGAGCGGAGATAATTACTTTTGCGAA
AAAGAAAACGGCTGGCTTTTTGGTCGTAAGTAGATGAGGACTTTGTTGGT
TGTACTGCTTGTTTGCGCCCTCGTCTGGGAGTCAGAGGCATGGTTCCGTC
GTCGTCGTCGACGTACCTCCTCAAACTGTGGCTCCCCACCGAGCGGGACG
GGCGTGAGCCGTTGGAGCTGCAACTGGCCATTCCAACACGGAGAGACCTG
CAATTTCCGTTGCAGGAGTGGCTACACCTATGTGAGCGGCAGCGCCGTTA
GGACGTGCAACAACGGGGCGTGGAGCGGAGCTACATACGTTTGCGCACAA
CAACAACGAGATTGTAGCGCCCCATTCAAGGGGAAGGGCGTGAGCCGTAG
TGGCTGCTTTTGGCGTTACCGACACGGAGAGACCTGCACATTCAGTTGCA
GGAGACGCTACACCTATGTGAGCGGCAGCTCCGTTAGGACGTGCAACAAC
GGGGCGTGGAGCGGAGATAATTACTTTTGCGAAAAAGAAAACGGCTGGCT
TTTTGGTCGTAAGTAGATGAGGACTTTGTTGGTTGTACTGCTTGTTTGCG
CCCTCGTCTGGGAGTCAGAGGCATGGTTCCGTCGTCGTCGTCGACGTACC
TCCTCAAACTGTGGCTCCCCACCGAGCGGGACGGGCGTGAGCCGTTGGAG
CTGCAACTGGCCATTCCAACACGGAGAGACCTGCAATTTCCGTTGCAGGA
GTGGCTACACCTATGTGAGCGGCAGCGCCGTTAGGACGTGCAACAACGGG
GCGTGGAGCGGAGCTACATACGTTTGCGCACAACAACAACGAGATTGTAG
CGCCCCATTCAAGGGGAAGGGCGTGAGCCGTAGTGGCTGCTTTTGGCGTT
ACCGACACGGAGAGACCTGCACATTCAGTTGCAGGAGACGCTACACCTAT
GTGAGCGGCAGCTCCGTTAGGACGTGCAACAACGGGGCGTGGAGCGGAGA
TAATTACTTTTGCGAAAAAGAAAACGGCTGGCTTTTTGGTCGTAAGTAGA
TGAGGACTTTGTTGGTTGTACTGCTTGTTTGCGCCCTCGTCTGGGAGTCA
GAGGCATGGTTCCGTCGTCGTCGTCGACGTACCTCCTCAAACTGTGGCTC
CCCACCGAGCGGGACGGGCGTGAGCCGTTGGAGCTGCAACTGGCCATTCC
AACACGGAGAGACCTGCAATTTCCGTTGCAGGAGTGGCTACACCTATGTG
AGCGGCAGCGCCGTTAGGACGTGCAACAACGGGGCGTGGAGCGGAGCTAC
ATACGTTTGCGCACAACAACAACGAGATTGTAGCGCCCCATTCAAGGGGA
AGGGCGTGAGCCGTAGTGGCTGCTTTTGGCGTTACCGACACGGAGAGACC
TGCACATTCAGTTGCAGGAGACGCTACACCTATGTGAGCGGCAGCTCCGT
TAGGACGTGCAACAACGGGGCGTGGAGCGGAGATAATTACTTTTGCGAAA
AAGAAAACGGCTGGCTTTTTGGTCGTAAGTAGATGAGGACTTTGTTGGTT
GTACTGCTTGTTTGCGCCCTCGTCTGGGAGTCAGAGGCATGGTTCCGTCG
TCGTCGTCGACGTACCTCCTCAAACTGTGGCTCCCCACCGAGCGGGACGG
GCGTGAGCCGTTGGAGCTGCAACTGGCCATTCCAACACGGAGAGACCTGC
AATTTCCGTTGCAGGAGTGGCTACACCTATGTGAGCGGCAGCGCCGTTAG
GACGTGCAACAACGGGGCGTGGAGCGGAGCTACATACGTTTGCGCACAAC
AACAACGAGATTGTAGCGCCCCATTCAAGGGGAAGGGCGTGAGCCGTAGT
GGCTGCTTTTGGCGTTACCGACACGGAGAGACCTGCACATTCAGTTGCAG
GAGACGCTACACCTATGTGAGCGGCAGCTCCGTTAGGACGTGCAACAACG
GGGCGTGGAGCGGAGATAATTACTTTTGCGAAAAAGAAAACGGCTGGCTT
TTTGGTCGTAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000033 | genome | Sc0000033:74625..78911 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79612_cuf0 |
| Biotype | protein_coding |
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