transcript:BL79794_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL79794_cuf0
Unique Nametranscript:BL79794_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL79794_cuf0

>transcript:BL79794_cuf0-protein ID=transcript:BL79794_cuf0-protein|Name=transcript:BL79794_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=178bp
PVGPSGEAGPRGPKGTAGSPGKDGARGQVGSAGLVGSPGETGPIGPVGPP
GENGLPGHRGLQGPPGKTGPVGPVGYPGETGPPGPIGQVGPLGETGPSGH
RGPRGSPGKTGPIGPVGPPGETGPIGPEGFPGKTGSIGPVGAPGETGPPG
PRGPRGSLGKTGPPARRENKWQKHGLKK
Run BLAST on NCBI

mRNA from alignment at Sc0000002:5061611..5062661+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL79794_cuf0 ID=transcript:BL79794_cuf0|Name=transcript:BL79794_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1051bp|location=Sequence derived from alignment at Sc0000002:5061611..5062661+ (Branchiostoma lanceolatum)
CCAGTGGGCCCTTCCGGAGAGGCTGGGCCCCGTGGACCGAAAGGAACAGC
CGGGTCCCCAGGAAAAGACGGGGCACGTGGGCAAGTGGGCTCCGCTGGAC
TAGTTGGTTCCCCCGGGGAGACTGGACCGATCGGGCCAGTGGGCCCTCCC
GGGGAAAATGGGTTACCTGGGCATCGTGGGCTACAGGGCCCTCCCGGAAA
GACTGGCCCGGTCGGTCCAGTTGGTTACCCCGGGGAGACTGGCCCACCTG
GCCCGATCGGGCAAGTGGGCCCTCTCGGGGAAACTGGGCCATCTGGGCAC
CGTGGGCCAAGGGGTTCTCCCGGGAAAACTGGACCGATCGGGCCGGTGGG
CCCTCCCGGTGAAACTGGGCCGATCGGTCCAGAGGGCTTTCCCGGGAAGA
CTGGGTCGATTGGGCCAGTGGGCGCTCCCGGGGAAACTGGGCCACCAGGG
CCCCGTGGGCCAAGGGGCTCTCTTGGGAAGACTGGCCCGCCTGCACGACG
GGAAAACAAATGGCAGAAACATGGGTTAAAAAAGTAAACAAAGTGTAAGG
GAAGACATAGAAGAGGCGGCCTTGACATGATAGTCAGATCGATTTCCTCA
CTCGTTTCATCACAAGTCACTGAATTCCACAAGCTTACGTCTAAAGTTCC
GACTACCACTAAGTCTGACTGCATGTAAAAGTCAACTTGGGCTTTTACAA
AACGTACACACATTGGTTATGATATATTTTCCACCCACCACGCGGGCGGT
CTGCATATAAGGCTTCTTCTTATTCTATGAAAAGAGGCGCACATGTATTT
ACACCAGAAATGCACAGCTTTGCACGGATTCTAATCGCGTTTTGCACTCG
ACTAGCTGGGAAATTATTCAAGATCTGTACTGTAGTGATGGTCCTCAATG
AGGAGGCTATATCGCGTAATACCCAAGTAACTCAATCTTAAAAGTAAAGG
AGTACCTATCAGGGCAGACCATAGGTCTTCAGATGAAACCACCTGTAGCA
AGGATGATGACGTAGCGTGTAGCTGTTCTGGTACTAATGCATATCTTGTA
G

Coding sequence (CDS) from alignment at Sc0000002:5061611..5062661+

>transcript:BL79794_cuf0 ID=transcript:BL79794_cuf0|Name=transcript:BL79794_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=537bp|location=Sequence derived from alignment at Sc0000002:5061611..5062661+ (Branchiostoma lanceolatum)
CCAGTGGGCCCTTCCGGAGAGGCTGGGCCCCGTGGACCGAAAGGAACAGC
CGGGTCCCCAGGAAAAGACGGGGCACGTGGGCAAGTGGGCTCCGCTGGAC
TAGTTGGTTCCCCCGGGGAGACTGGACCGATCGGGCCAGTGGGCCCTCCC
GGGGAAAATGGGTTACCTGGGCATCGTGGGCTACAGGGCCCTCCCGGAAA
GACTGGCCCGGTCGGTCCAGTTGGTTACCCCGGGGAGACTGGCCCACCTG
GCCCGATCGGGCAAGTGGGCCCTCTCGGGGAAACTGGGCCATCTGGGCAC
CGTGGGCCAAGGGGTTCTCCCGGGAAAACTGGACCGATCGGGCCGGTGGG
CCCTCCCGGTGAAACTGGGCCGATCGGTCCAGAGGGCTTTCCCGGGAAGA
CTGGGTCGATTGGGCCAGTGGGCGCTCCCGGGGAAACTGGGCCACCAGGG
CCCCGTGGGCCAAGGGGCTCTCTTGGGAAGACTGGCCCGCCTGCACGACG
GGAAAACAAATGGCAGAAACATGGGTTAAAAAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL79794gene:BL79794Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL79794_cuf0-E1BL79794_cuf0-E1-1564476830-36160Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL79794_cuf0transcript:BL79794_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:5061611..5062661 +
Properties
Property NameValue
Transcript idBL79794_cuf0
Biotypeprotein_coding