transcript:BL79801_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL79801_cuf0
Unique Nametranscript:BL79801_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL79801_cuf0

>transcript:BL79801_cuf0-protein ID=transcript:BL79801_cuf0-protein|Name=transcript:BL79801_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=515bp
MLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRP
VISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGG
MLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRP
VISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGQGG
MLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRP
VISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGG
MLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRP
VISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGG
MLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRP
VISVIEGRGGMLYALQVPRPVISVIEGRGGMLYALQVPRPVISVIEGRGG
MLYALQFPRPVISVI
Run BLAST on NCBI

mRNA from alignment at Sc0000029:2368768..2371739+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL79801_cuf0 ID=transcript:BL79801_cuf0|Name=transcript:BL79801_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2972bp|location=Sequence derived from alignment at Sc0000029:2368768..2371739+ (Branchiostoma lanceolatum)
TGAAGACATGTGTTTCTGGCGATGACATGTCAATAAATAAAACTAAGACA
AGGTAACTGAACATATTTTTGATTTAAAACATTCTTAAGTGTACCAAGGT
CTATTTTCTCACCTCATTGTTTGTACTCAGCGAGCCTTAGAGCAGTCCAA
AATAAAATGCACAGCCAGCCGTGTCCGGTGCAAGGAGGGAGGGGGGCGAC
CAAACTCACATCGCTGATACGTCAGTCACCATAGTTTTCCGAACGTTTGA
GTTTAAGCCATAGTCCTCCTCGACTCATAAGCCTCTCCCAGATCGATGGT
CCACCAATGTAGACTGTGGTGGATCCATTTATAGCGCCGAGAGGCGCGTA
ACGCCCTGTATTCATCTCTACTGTGGACCCCGGACCTGCCCGGACCAACG
GTTTTCTGAATAATGCCGCCCACTCAGTGCGCATGCGTAATCCAACAGAC
CAATCAGAGGACAGTATTGTAATGACCTATAGGATGTTGACCTGCAGGTC
AGAAATTGACCTTTCTGGTTTTTAAGAAACTTTATCTGTACTGTGACAGT
CAAACTGAAGATCAGGACCTTCCTCCTGGGTTCGATTCACGTTTTCCTCA
AAGTTTCTGTTTTCATCTTGGTCCCCCTTTTTCTTGCTTGTCTTACATTG
TGTATTTATGAGTTACTGTGATCAGAAACTATTAACTTTGTTATAAGTAA
CAGTAACATTTAGATCATAACATTTGTGTATACTACATGGATTTGGAGAC
TTTCTTTATATTTGATTATTCTTTGTAGATATAAAGTTCATCAAAGTAGG
GTCTAAGACTTAATGAGAATATTTAACGTTAAATGAGATAGAGGAAAACT
ATTTGCCTCATAGTAAATCCATGAACAGACATGTATTAACAAACAAATTC
ATAGTTGTAACTCATGATCTCAGTAGGTGGTGGGGGTTGGGGTGGGCTGT
ATACACTGTGAGTACACCTGTATAGCTTCTTATCTTGTGTGTGTGTGTGA
TAATGAGTCAATTGTAAGTTGTTGCCCATAGGCACATGTAACTAACTGCA
GGAAAGGACTGACAGACAATTGGTACCACAATATACCATGTGACTATTCT
AGCTTATTTGGGTTTATATGCAAAGCGATTCCCCCGCCCTGAGTTATCTC
TGTTATCTAAGAGTGGTGGGGTGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCAGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAATT
CCCCCGCCCTGTGATATCTGTTATCTAAGGGTAGGGAGGGATGTTATATG
CACTCCAAGTAACTGCACTTGAGATACAGTTTTGCAAGGGTTTACACTCA
TTTAACAGGGATTTACCGGTATTTACTTGGTAAATGTATGGTAAAGGTGG
GTAAATGTCATACACCATATTTACCAACAATTTACTCCTTCCAGGTAGAT
TTGGTAAATCCCACTTTTCGTG

Coding sequence (CDS) from alignment at Sc0000029:2368768..2371739+

>transcript:BL79801_cuf0 ID=transcript:BL79801_cuf0|Name=transcript:BL79801_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1548bp|location=Sequence derived from alignment at Sc0000029:2368768..2371739+ (Branchiostoma lanceolatum)
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCAGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGG
GCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCTGTGATATCTG
TTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGTCCCCCGCCCT
GTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATGCACTCCAAGT
CCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGGATGTTATATG
CACTCCAAGTCCCCCGCCCTGTGATATCTGTTATCGAAGGGCGGGGAGGG
ATGTTATATGCACTCCAATTCCCCCGCCCTGTGATATCTGTTATCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL79801gene:BL79801Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL79801_cuf0-E1BL79801_cuf0-E1-1564476830-174380Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL79801_cuf0transcript:BL79801_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000029genomeSc0000029:2368768..2371739 +
Properties
Property NameValue
Transcript idBL79801_cuf0
Biotypeprotein_coding