transcript:BL80094_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL80094_cuf0
Unique Nametranscript:BL80094_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL80094_cuf0

>transcript:BL80094_cuf0-protein ID=transcript:BL80094_cuf0-protein|Name=transcript:BL80094_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=102bp
EDVKESKCVIYCFVYYVLWVNSIVQTSLIDHCDFIMKATFSSRTLASVSG
CPEHVIHIIKSVWPYIQSKLPQKTTQETDKIGCRQMVTIDRILNSCSNWK
II
Run BLAST on NCBI

mRNA from alignment at Sc0000192:304066..304639-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL80094_cuf0 ID=transcript:BL80094_cuf0|Name=transcript:BL80094_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=574bp|location=Sequence derived from alignment at Sc0000192:304066..304639- (Branchiostoma lanceolatum)
AGAAGATGTGAAAGAATCAAAATGTGTCATTTATTGTTTTGTATACTATG
TTCTCTGGGTGAACTCAATTGTTCAAACTTCTTTAATTGACCACTGTGAT
TTCATAATGAAGGCAACTTTTTCTTCTCGCACGCTCGCATCAGTTTCGGG
GTGCCCCGAGCATGTCATCCATATAATCAAATCAGTATGGCCTTATATTC
AGTCAAAATTGCCCCAAAAGACCACTCAGGAGACCGATAAAATCGGTTGT
AGACAGATGGTCACTATAGACAGGATTCTTAATTCTTGTTCCAATTGGAA
AATCATTTAAGGCTCCACCAAAAAGTGCTCATATTGACCTGGAGGTCCAA
GCGTAGAGGTAGTCACTTGTACAGGTTAGGTTTTCCTGAGTGTATAGATA
ATCGACCTCGTTTCAGAGCAAACGGTGATACTAGTACGATGGAACGAATT
CTTAATCTTTTTGAGACTCAAAGATAATATAGCCTACGTTGAGACATTTG
CAACACACACACAAAATACTGAATTTTTCACCAGATGGACTTTCTGACTA
ACTTTGTATGCGTTGCCTAACAAA

Coding sequence (CDS) from alignment at Sc0000192:304066..304639-

>transcript:BL80094_cuf0 ID=transcript:BL80094_cuf0|Name=transcript:BL80094_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=309bp|location=Sequence derived from alignment at Sc0000192:304066..304639- (Branchiostoma lanceolatum)
GAAGATGTGAAAGAATCAAAATGTGTCATTTATTGTTTTGTATACTATGT
TCTCTGGGTGAACTCAATTGTTCAAACTTCTTTAATTGACCACTGTGATT
TCATAATGAAGGCAACTTTTTCTTCTCGCACGCTCGCATCAGTTTCGGGG
TGCCCCGAGCATGTCATCCATATAATCAAATCAGTATGGCCTTATATTCA
GTCAAAATTGCCCCAAAAGACCACTCAGGAGACCGATAAAATCGGTTGTA
GACAGATGGTCACTATAGACAGGATTCTTAATTCTTGTTCCAATTGGAAA
ATCATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL80094gene:BL80094Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL80094_cuf0-E1BL80094_cuf0-E1-1564476830-379069Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL80094_cuf0transcript:BL80094_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000192genomeSc0000192:304066..304639 -
Properties
Property NameValue
Transcript idBL80094_cuf0
Biotypeprotein_coding