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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80217_cuf0 >transcript:BL80217_cuf0-protein ID=transcript:BL80217_cuf0-protein|Name=transcript:BL80217_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
MKMSLPFMFNPLEEDDQRTLCSQCNLSLKKYLSYENINVPLKEPKCVIPI
KKDGNCFYRASSFYLTGSEDEHYKLRLVIINYLLSLTEDVYKRLLPPGIS
MNSYIHNRKPSPFCFGTWATEVEIYGMSLYLGRSIYIHSMHGYTWKWLKY
SSSGAIDHVTSTVDDRSGIYLKHTDTIHFDVVIAVVSCQSSLKTSSKDLR
HFKRRNADDDKYEVIDNVKRTKVQFLQNCNVQEKTSTKMSVTISDNVHSS
SHEVHESNQKCHIHAAMMRDHNYAAYYINN Run BLAST on NCBI mRNA from alignment at Sc0000256:100777..103486- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80217_cuf0 ID=transcript:BL80217_cuf0|Name=transcript:BL80217_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2710bp|location=Sequence derived from alignment at Sc0000256:100777..103486- (Branchiostoma lanceolatum)
GAAGAACATGTCAGTACAGACTTAATGGGGATACAACTGTTATGGCACTT
GCCATTCGTCGCTGACATCAGGGCACAAGTACAACTGGATTCACGTTATT
GGTTTGTAAACGTCTTTCTGATTGCACCGGGGAGAAGGGGATTTGAGTAA
TAGATGAGGGCATAATAATTGAAAGAAGTCTATCTAAGTCGACAACATGC
TTGTTATATTGTATTGAATAATGATTAGAATCCATTTGACATCGAAAATG
AAGATGATTATATAACAAATGTACAACGGAAGTCAATTCCAAGTCACAAA
AATTATGCAAATAACATAACACATATTTCGTTGTATTAACCTTTACTAAA
GGTACCTAAACAATATGATATCCATAGGTTTTATTGTATTGGAATTATAA
AATGTTTGAATAAATTATGCAGATACGGTCCGTCTTGGCATCACACATAA
TCCATTGTATTAACCTTCCCTACAGCTATTTTCATGTGTGACATGATATC
CATGGCGTTTTTTGGAAAAGGTAGTTATGACTAATATGATATATGTTGTA
TATAGATTAAGGATAGCACCCAGATGAAATTGGTCCATTGATTATGAAAG
TAAGGTCTGCAATAATGTAACACACATGTTGTTGTATTTACCTTTTTTCA
ATCTACTCACATCTCATTTATTGAAAGGAAACTGTGGAAATTCTACATCA
ATTATGCAAAGAAGGTCCACATTAGCATAGATTTTTTCTAAAGTACCTTA
ATGGTTAATATGATATCTGTTGCATTTACCGTAAGACAAAAACAGTAGGG
TAACATATTAGGATAACACAAATTGCGTTGTATTCACCTTTTTTAAAGCT
ACGCGCATTTCAAATATAACATTGATAGCATCTATCGAAAGAGGAAGATT
AAAAATTCTACATCAATTCTGCAAAAAAAGTTGCTTATAATCATAGCACA
TATTTCATTGTAGTGACTTTTCTTAAAGCTGTCGTTATGTCTAATATGAC
ATCGGTTGCATTCATCGTAAGGGCATAACCGACATGAACCTTTTACATTT
AGATTATGTAAATGAGGTCCTTAATAGCCTGACACATATTTCGTTGTATT
CATCATTACTAATGCTACCGACATGTCCAATATGACATATCCATAACATT
TGTTTTAAGGAAAACATGGAATTTTGCCATTTGGTATTAGTTATGCCAAT
GAAGTCCTCATTAGCATGACACGTATTTTATTGCCTTGATCTTTTCTGAA
ACTGACTTCATGTCTAAGATGACATATGTTGCATGTACATTAAGGGTAGA
ACCCAAATGAACTTCCTGTATTGATTATGCAAATGAGGTCCAGAACAGCA
TAACAGACATTCCGTTGTATTCATCTTTCGTACATCTATCCAAGGTTTCA
ACATTAAAATTCTGGCATTTATTGCAATGTAAACATCTATTTCTACATCG
TGTATGCAAATAACTTCCTTATGAGCATAACATATCTTATTGTTATTCAT
CTAAAACTACCGTGTTATTCTGTAAGTGACTTGGAATTGACTCTACCTGT
TTTGCATTGTCAATTTGTAGCGTTATTATTTTACAACAGATACTTGTAAG
CAATATAAATCATGAGTAATGTTTTGGTATACCAATATGTAATGGTATAA
TATTTGTATTGTTTTTATTACAGTGTGATTGATGAAGCGAATCTTGAACA
TAATTCATCGTCGTATCTATGGAGGAGTGACAATTTGACAGGTGAAAGTG
ACATCCTGTCATTGACAAGTAGTCTGAACATGTGTTCTGAAATGAACATC
ATGAACATACTATCTTTTGTTGTTAGAATGGTGTAAAGTCCATATAGTGT
AGTGTTAATGATTTCTACAAATGAAGATGTCGTTACCTTTTATGTTTAAT
CCATTGGAAGAAGACGATCAACGAACTTTATGTAGTCAGTGCAATTTATC
CTTGAAAAAATATTTGTCATATGAAAACATTAATGTTCCATTGAAGGAGC
CAAAATGTGTTATTCCTATAAAAAAAGATGGCAACTGTTTTTATAGGGCT
TCTAGTTTTTATCTGACCGGTAGCGAAGATGAACATTATAAACTTAGATT
AGTAATTATAAATTATTTACTTTCATTGACTGAAGATGTATATAAAAGGT
TGTTACCACCTGGGATATCTATGAATTCTTACATACATAATCGTAAGCCA
AGTCCATTCTGTTTTGGAACCTGGGCCACCGAAGTAGAAATCTATGGAAT
GTCATTATATCTTGGAAGGTCTATTTATATACACAGTATGCATGGTTATA
CTTGGAAATGGTTAAAGTACAGTTCTTCGGGTGCCATAGATCATGTAACA
AGTACGGTTGATGATAGAAGTGGTATATATTTGAAACATACAGATACAAT
TCATTTTGATGTTGTTATTGCAGTTGTAAGTTGCCAAAGTTCTTTAAAAA
CATCATCAAAAGACTTGAGACATTTCAAACGAAGAAACGCCGATGATGAC
AAGTATGAAGTGATCGATAATGTGAAAAGAACAAAAGTACAGTTTTTGCA
AAATTGCAATGTGCAGGAAAAAACCTCTACTAAAATGTCAGTAACAATTA
GTGACAATGTTCATTCCAGTTCTCATGAAGTCCATGAATCAAATCAGAAA
TGCCATATACATGCTGCAATGATGAGAGATCATAATTATGCTGCTTATTA
TATCAATAAT Coding sequence (CDS) from alignment at Sc0000256:100777..103486- >transcript:BL80217_cuf0 ID=transcript:BL80217_cuf0|Name=transcript:BL80217_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=840bp|location=Sequence derived from alignment at Sc0000256:100777..103486- (Branchiostoma lanceolatum)
ATGAAGATGTCGTTACCTTTTATGTTTAATCCATTGGAAGAAGACGATCA
ACGAACTTTATGTAGTCAGTGCAATTTATCCTTGAAAAAATATTTGTCAT
ATGAAAACATTAATGTTCCATTGAAGGAGCCAAAATGTGTTATTCCTATA
AAAAAAGATGGCAACTGTTTTTATAGGGCTTCTAGTTTTTATCTGACCGG
TAGCGAAGATGAACATTATAAACTTAGATTAGTAATTATAAATTATTTAC
TTTCATTGACTGAAGATGTATATAAAAGGTTGTTACCACCTGGGATATCT
ATGAATTCTTACATACATAATCGTAAGCCAAGTCCATTCTGTTTTGGAAC
CTGGGCCACCGAAGTAGAAATCTATGGAATGTCATTATATCTTGGAAGGT
CTATTTATATACACAGTATGCATGGTTATACTTGGAAATGGTTAAAGTAC
AGTTCTTCGGGTGCCATAGATCATGTAACAAGTACGGTTGATGATAGAAG
TGGTATATATTTGAAACATACAGATACAATTCATTTTGATGTTGTTATTG
CAGTTGTAAGTTGCCAAAGTTCTTTAAAAACATCATCAAAAGACTTGAGA
CATTTCAAACGAAGAAACGCCGATGATGACAAGTATGAAGTGATCGATAA
TGTGAAAAGAACAAAAGTACAGTTTTTGCAAAATTGCAATGTGCAGGAAA
AAACCTCTACTAAAATGTCAGTAACAATTAGTGACAATGTTCATTCCAGT
TCTCATGAAGTCCATGAATCAAATCAGAAATGCCATATACATGCTGCAAT
GATGAGAGATCATAATTATGCTGCTTATTATATCAATAAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000256 | genome | Sc0000256:100777..103486 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80217_cuf0 |
| Biotype | protein_coding |
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