|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81113_cuf0 >transcript:BL81113_cuf0-protein ID=transcript:BL81113_cuf0-protein|Name=transcript:BL81113_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=417bp
MAAGKVAGPELDIHRLYMAQKNKMEYCATARQKATDSTGGGTSVWNQHIL
RNVPTKRAALQQGINRINSSTFGRLRPSPLGGTRARPLGTSRSMSAMSRG
KRFHQLQDFLLGEDFFQDDDDLALTCMKLHEVVVVGTASKMSPREAKTEE
KLQNVQQNVVSTTSVYPVQLPAIERQKSLIDREPIAQEAAKRSKTAKHLS
NKLARRQARKTSSRAWEQPRPKSCSEAESSDLDVDSITTPECQPQTIERM
TDSRPRSFAGLKPVSRGVPSPDQQCTDDNSTELLTTTKSLYTRTNRATPS
VLKLSPLTYFEVDRNNMCISDTLSTTQGTTRQQAFPNRARRASEPVISVA
APPEPRADSPRKSIIRSKSTEASSDSSSESDGGRPETKRCARTVRFMGME
VKIYAPDAPVIEISHKG Run BLAST on NCBI mRNA from alignment at Sc0000029:785945..789127- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81113_cuf0 ID=transcript:BL81113_cuf0|Name=transcript:BL81113_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3183bp|location=Sequence derived from alignment at Sc0000029:785945..789127- (Branchiostoma lanceolatum)
GTTTTTACACCACACAACCCACATTCAGCGCCCGTCGACCACGACTGCTC
TATTCAAACACTAACACAATCGCCAGGGTTGCTCACGTCTCTATATATAG
ACGACGTCATGTAGTTCGTGTTTAATCATTAACATGAGCGTCTGTGGTGG
AAAAAAATCCGCTGAAGAGTGTACTGAGCCGTGGTCAGATGGTCGCAGAG
TAGCAACCGGGCAAACAGAGCACTTGTGCTGAGCGGTGAGTACTTCAATA
TGGATTACCGCTAGACATCTGGGCCAAAACAGTGGAAGGAAAAGTCCCGT
AGGCATGGCAACACTGTCTTAAAGTAGTCTTGGGACTTGAGAGTGGCTGT
TTTTGCCCACAAGCCGGCGGGAAAAAGACGTTAGAAGTACCCCCGGCGGA
CAGCCATATATCACTGGGTCCGTGTGGTCCGTGTGTGTACTGGGATCTTT
TCGAGTACGTCCGTGACGTTTCGGGGATACTATCATCAATACTTGTCCAT
AAAAAAAGGACTTGTGGTCTATCGGGATATCTCTCCAACTACGTTTATAC
GACAAGGAAGTGTACAACTTCTTCTGGAGTTTCTAGTCTTGTGCTGAGAT
GGAAAAGGCGAGTCTTGGCGACAGAAACGTTGTTGTAAGTGAACCGTTGG
AGTTCAAAACTGTGGAGAGATCGCCGTTTCTTTATGGAGTTACAGTTTCG
GTGTTGTTAACGTTTGCAACCAACTGAGAACGTTCTTTTAAAACCTGATA
TCGGGACGACACGGTGAGAATGGCGGCGGGTAAAGTTGCAGGGCCCGAAC
TTGACATCCACCGCCTGTACATGGCGCAGAAGAACAAGATGGAGTACTGT
GCGACAGCCAGGCAAAAAGCTACGGACTCTACGGGAGGAGGCACATCCGT
TTGGAACCAACATATCCTACGAAACGTACCGACGAAACGAGCCGCCCTAC
AGCAGGGTATTAATCGGATAAACTCGTCTACCTTCGGTCGACTTCGGCCG
AGTCCGTTGGGGGGCACGAGAGCTCGGCCCCTCGGCACGTCTCGCAGCAT
GTCGGCCATGTCTCGAGGGAAACGATTCCACCAACTTCAAGACTTTCTCC
TCGGAGAAGATTTCTTTCAAGACGATGACGACTTGGCACTGACTTGTATG
AAGCTTCACGAAGTTGTGGTGGTGGGAACTGCGTCGAAAATGAGCCCTAG
GGAAGCAAAGACTGAGGAGAAATTACAAAATGTACAACAAAATGTCGTGT
CGACTACGTCCGTTTATCCTGTACAGTTGCCGGCTATAGAGAGGCAAAAA
TCTCTGATCGATCGCGAGCCGATAGCACAAGAGGCGGCCAAACGTAGCAA
GACTGCAAAACACCTCAGCAATAAACTTGCGCGTAGGCAAGCTCGAAAGA
CTTCCTCGCGGGCTTGGGAGCAACCGAGACCGAAGTCGTGCAGCGAGGCA
GAGTCGTCCGATTTAGACGTAGACTCTATCACAACGCCGGAGTGTCAACC
ACAGACGATTGAAAGAATGACGGACTCACGACCAAGAAGCTTCGCAGGAC
TGAAACCCGTCTCTAGAGGAGTTCCCTCCCCTGACCAACAATGTACAGAC
GACAATTCGACGGAACTTTTGACCACTACTAAGTCGCTCTACACACGCAC
AAATCGCGCGACACCATCAGTGTTAAAACTGAGCCCACTGACATATTTCG
AAGTTGACAGAAACAATATGTGTATATCTGACACTCTCAGTACCACACAG
GGCACAACGAGGCAACAGGCGTTCCCTAACCGGGCAAGGAGGGCATCGGA
GCCGGTCATATCGGTAGCAGCGCCGCCGGAGCCGCGGGCTGACTCCCCGA
GAAAGTCCATCATCAGGTCGAAGAGTACCGAAGCGTCCAGCGACAGTTCT
TCGGAGAGCGACGGGGGTAGGCCCGAGACGAAGAGGTGCGCCAGAACGGT
TAGATTCATGGGAATGGAAGTAAAGATATATGCACCAGACGCCCCCGTTA
TTGAAATTAGTCATAAGGGGTAGACACTTGACACTAGACACTTGATCTTA
TCTATGAGTCTACATGTGCAAGAAACCTTGCCGCGCTACTACAGAAACTC
TTTCACTGTATTGAGCATCAAAACAAGTTGTTTTGTTACTTGCCTCTAGC
TAGATATCAGTCGTCATGCAAAGGATCACTGTCTTCATTTGAAAGTTAGA
GTGTTTTATAGAAGAAATTTGACAGCATTGTAGATATCACTGACAAAGTC
GACCAGGTATTATGGACCGACTGATGGCATGCGTTGGTAGTGCGTTTTGT
GCAAGTAAATTATTGTTAAAGGAGCACCGACTATAGTATTTAATTCATGT
ACAGTTATTTGCCCTTGATTTGGGAAAACTTGTTCTAAACTGTAATTTAG
GCTGTTGCAATCTCATGATCTCTACTGACATTGTGAATGTCTAAAATTGC
ATTGTTTAATGTATACGTATACGTATACGCAATGAGTATCCAACATACGT
GATGTGGAAATGGAAGAAAAAGACAAATGTTTTAAGATAAGGATATGTAC
ATCTAACAACGACTATCAAGATACGTAAAAGCCATTTGATAAGTGTTGTA
GTCAATTCTTAAAGGCAACCAAAGCAATATTAGGGCAAAAAAATGAAAAT
AAAAAAAGCTGAAATCTTTATGGTAGTGATATTTGTTTAGCACATTTGCG
TAATAACTTCATACTTCATAGGATTTTAAAACCGCGCAAAATCGTCCCGT
ACGAAGATCCCCTTAGTTTCGTGAGCCTACAAAAACGCCAGGCACGATTT
TCAGTGAGTTCTCACATTACAACAACATCATATGTATGCAACATGGACGT
TGCTTTACATTGTGATAGTGTTGTTTGAACTAATCATGTATAGAAAACAC
TAAATAAATTGACTTTCAAAGTCAGATTTTCGGGCCTTAATATTGCTTTG
GTTGCCTGTAACTGTTGAAGAAAAAAGTGATTGTTGAATGCACAGATCTT
TGCTAATAAATCACGTAGAGTCTACATGTGGGTTTGGGGGGTCCAAAAAT
ATTTGTACTCGCTTAAAAGGGACGACTGTTGTCAAACAAATTAAAACCGT
GTACATCTACCCGACACAATTGTCTGTTTGCTAGTCTTTCCTTTCCCGTC
ACCCTTAGTTTGAGGAACAGCGTCTTGGTAAAC Coding sequence (CDS) from alignment at Sc0000029:785945..789127- >transcript:BL81113_cuf0 ID=transcript:BL81113_cuf0|Name=transcript:BL81113_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1254bp|location=Sequence derived from alignment at Sc0000029:785945..789127- (Branchiostoma lanceolatum)
ATGGCGGCGGGTAAAGTTGCAGGGCCCGAACTTGACATCCACCGCCTGTA
CATGGCGCAGAAGAACAAGATGGAGTACTGTGCGACAGCCAGGCAAAAAG
CTACGGACTCTACGGGAGGAGGCACATCCGTTTGGAACCAACATATCCTA
CGAAACGTACCGACGAAACGAGCCGCCCTACAGCAGGGTATTAATCGGAT
AAACTCGTCTACCTTCGGTCGACTTCGGCCGAGTCCGTTGGGGGGCACGA
GAGCTCGGCCCCTCGGCACGTCTCGCAGCATGTCGGCCATGTCTCGAGGG
AAACGATTCCACCAACTTCAAGACTTTCTCCTCGGAGAAGATTTCTTTCA
AGACGATGACGACTTGGCACTGACTTGTATGAAGCTTCACGAAGTTGTGG
TGGTGGGAACTGCGTCGAAAATGAGCCCTAGGGAAGCAAAGACTGAGGAG
AAATTACAAAATGTACAACAAAATGTCGTGTCGACTACGTCCGTTTATCC
TGTACAGTTGCCGGCTATAGAGAGGCAAAAATCTCTGATCGATCGCGAGC
CGATAGCACAAGAGGCGGCCAAACGTAGCAAGACTGCAAAACACCTCAGC
AATAAACTTGCGCGTAGGCAAGCTCGAAAGACTTCCTCGCGGGCTTGGGA
GCAACCGAGACCGAAGTCGTGCAGCGAGGCAGAGTCGTCCGATTTAGACG
TAGACTCTATCACAACGCCGGAGTGTCAACCACAGACGATTGAAAGAATG
ACGGACTCACGACCAAGAAGCTTCGCAGGACTGAAACCCGTCTCTAGAGG
AGTTCCCTCCCCTGACCAACAATGTACAGACGACAATTCGACGGAACTTT
TGACCACTACTAAGTCGCTCTACACACGCACAAATCGCGCGACACCATCA
GTGTTAAAACTGAGCCCACTGACATATTTCGAAGTTGACAGAAACAATAT
GTGTATATCTGACACTCTCAGTACCACACAGGGCACAACGAGGCAACAGG
CGTTCCCTAACCGGGCAAGGAGGGCATCGGAGCCGGTCATATCGGTAGCA
GCGCCGCCGGAGCCGCGGGCTGACTCCCCGAGAAAGTCCATCATCAGGTC
GAAGAGTACCGAAGCGTCCAGCGACAGTTCTTCGGAGAGCGACGGGGGTA
GGCCCGAGACGAAGAGGTGCGCCAGAACGGTTAGATTCATGGGAATGGAA
GTAAAGATATATGCACCAGACGCCCCCGTTATTGAAATTAGTCATAAGGG
GTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000029 | genome | Sc0000029:785945..789127 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81113_cuf0 |
| Biotype | protein_coding |
|
