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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81416_cuf2 >transcript:BL81416_cuf2-protein ID=transcript:BL81416_cuf2-protein|Name=transcript:BL81416_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=185bp
MEEDCEISESDTGQLHLSESSNNRRQVKSLPSKVKVEPHPQVAPTPRISN
TRRSRNTKPNKQAYLNLLGQLNDSAVLAKLQDVPYNHRRIDKLRNDIFKE
THIKQYLFASKDNTPLGSPLQFFEGRNKSVHYAVPELHNMLPSPQNKKLR
WPKSPLHSCSVVGNGGILLDSGCGPNVDSAKVVLR Run BLAST on NCBI mRNA from alignment at Sc0000060:125146..130016+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81416_cuf2 ID=transcript:BL81416_cuf2|Name=transcript:BL81416_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4871bp|location=Sequence derived from alignment at Sc0000060:125146..130016+ (Branchiostoma lanceolatum)
CTGAGTAATGGCTGTATTGACCGGCACTGGAATAAAGGAGTGTGCATCGA
GATCTTGGGTGTTCGTCTGATCTGTTTATAGGAACTTGTTACAGTAGTGT
CCCCCCTTTTTCTATAATTTGTGGGTTTTTTTTTAAGTTAAATTAAATTA
AAAGAAGAATAGTCTTTTCTACAATGAGGTACATTACAAATGAACAAGGG
TGTTGGACAGCTCTATTTAACCTCCTTGACATGACCTAAATCGTTCTACA
CCGACAAATTATCTTCGTACTAACGCCTCTCAACCGTAGCGGTTCGACCA
GTCCCGCGCTACCGTGTCAGTCGTATCTAGCCAGGCAGCACAAACAAAAG
GTGCTCGATTCGCGTAGTAGTCTGACTCTGACTCCATACGCGGTGAGATA
GCCAACCGACAGCAAGAGTTGATATTTGCCGACACTGTAACCAGGAAGAC
TTCAAACTAATCACTGCGAGTGTGTACGACACTGGGGGAGAAGTGACGTT
GTCTTCACACACGAAAACATGAAACACCAACTCCAGATCCACGCATCTGA
GACAGCAGGACCGACACTCCTCAAGAAAGGCGCGGCGTCTCCTTGGTATG
CACTGAAGACGCTCTCACGAAACATTCTAGTGACGGTCGGACTTCTTATC
CTGGTACAGGACTTATACTTGGTCGCCTTGACATCCAGAATGGAGGAAGA
CTGCGAAATCTCGGAGTCTGATACAGGACAACTGCACCTCTCCGAGTCTT
CTAACAACAGGCGACAAGTCAAGTCCTTACCTAGGTATGTTTATAACCTA
ACGAAAATGGGTCATGATATTGGTGTCACTAATAGTGCCAGAAATTCTAT
GTGCTTAAAACATCATTGAAGTGTATTTCATGTTGTGGTTTGTATGATAG
TCTGTATTTGTCGATCTTTTACAATATAATGGTTGAAGTGTAACAGACAA
GCTCTACGACTTAGACAAAGATTTGGTCTCGGGGTTATGCCATGTTTGAA
GACGCCAGTTTCTGTGATAGAATCACACAATTGCTTGTAAAGGTCTTCTG
GTGAAATACTAAGACGCCCTTACCACTTTATTTCTTAAGTGGCGACAGAA
CTTGACGATTGTCTCTATCAACTCGGTCTTGGCAAAATAAAGTTTAGTTT
CTACGATATGCGTTGAACGATTACTGGTACTTAGAATAACCACCCGATGA
CCTAGATATGACGTCATACTGCCAGGTTGACGTCATACTGCCGAAAAATC
ATTCATAACAATTGTATACATCCTAATGTACATTGTCGTTTACGAAAGAC
TGTGGCATTTTTACCCTCACCACAGAAAGCTAGGTTTTCAATTCTTACTG
CATTTCTTTTATTGCATTTCACAAAAAGCAATATGGCAGGATTAAGCTCA
AGCAAAAAGGACAGGAATTAATCTCAAATCTACATCAATATCACGGTTAA
GAATGCTCTGAACCAACTTCTAATCAATAATCAAGTCTTCATTTTATCAA
AGTTCAAGACTTAACAGGGATATCCCTATTAGGAGGTTCCAATAAGTTGG
TAACTGGGAGACCCCGGCTCAATCCTGGATCAGGGCATTTTGGTTGGGAC
TGCACCCGTCTTTCGGAAGGGACGTAAAATGGGGTCTCGTGTTCGAGGAG
GTGCCTCGAGCACGTTAAAGGGGAAGGGCTAGCAACACTACCCTGTAAAA
TTATACCCTGATACTGAAACAGAATTGAGGAAACTTGCTGCCCTATGTGT
CACTTGGCACTACAAGGGTCTAAACTTAGCCTTTACGATCGGTCCCCAGA
AAGTGAGAAATGGAACGGAATGGAACGAAACGGAACGAAATGGAACGAAA
TAGAACGAATAAACCCGGCAAAAACGTTGTATTTGATATTATCAAATAGA
TTCAAGGAATAAAACACGTTATATTATTTATTTACCACTCACTTCTGTAT
TTAAGATGCTTCCCGTTCCGGTCTACTGTGAATGTTACAACGTTTCTTAT
ATTTCACTATCTACTGGTATTTCATTTCATAATGTTATATATGCTGTTTT
ACTTGGTTCCATTTCGTTCCATTTAGTTCCATTTTGTTCCATTTGGTACT
TTCTGGGGACCCCTTTACGATATATATATTTTCCACACAGTAAGGTGAAA
GTTGAGCCACATCCCCAGGTTGCGCCTACGCCCCGGATATCAAACACCCG
GAGGAGTAGAAACACTAAACCGAACAAACAAGCGTACCTCAACCTCCTCG
GACAACTCAACGACTCTGCCGTATTAGCAAAACTCCAGGATGTACCGTAC
AACCATAGGAGGATAGATAAGTTAAGGTAAGTAGGGATTTCTGTATTTTA
TTTTACAGATTTCTATGTATAAAAAGACTCTTTTTACACAACCAAGAGAT
TTATTCCACCGACATTTCGGTGACCATCTGTCACCTTCTTCAAGGCAATT
CTGACTGGTTCACATGATGCATTCCCAAACCCAAATAGTTGTGTATGTGT
TACACTTCTGTACGTTTGGGACCGCATAGTGATGTCATCTCCTGTGATTG
TACATATGTAAATACTTTGCGTTTGGGAATGCATATCATTATGTATAAGC
AGCAACACCTGTGCTGCATTGCTATGTGAACCAGTCAGAATTGTCTTGAA
GAAGGTGACAGATGGTCACCGAAACGTCAGTGGAATAAATCTCTTGGTTG
TGTAAAAAGAGTCTTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACACACACACACACACACACACACA
CACACACACACACACACACACAAATACACAAACACACACACCAAAGACAA
TACATACTTCTCAGAGGGGATAGATACTCACTGTTGTCTCTTTGCCAGGA
ACGACATATTCAAAGAAACGCACATCAAACAGTACCTGTTTGCAAGTAAA
GACAACACACCGCTGGGCTCCCCACTACAGTTTTTCGAGGGAAGAAACAA
AAGTGTTCACTACGCAGTTCCAGAGTTACACAACATGCTGCCATCTCCTC
AGGTAAGACAATGTATTGATGTTTAAAACACATTTTAAAGCTAATATGAG
AAAATCAAGGATTTAAAAGGACAAAGGAAAATGATTTAGAGTTTGTGGTT
TTCTTTCCCACTATGTCTACATTTTTTTGGTATTTACCTTTGCCAAGAAG
TATATGTTTTCGGGGCTGTGTGTCTGTTTGTTTGTTTGTTTGTTTGTTTG
TTTGTTTGTTTTGTGAACAGTAAAACTCGAGAAGTCACGGATGATACTAG
TATTTGTTATGTTGGAAGGTGTTGGTTATAGATGAATAAATTATTAGATT
ATGGGCCCCCTGATGACTTTCCATATTATTGCAGCAGAAGTTCAAGTTTC
GATATTTTATGTTCTGGACATGGTATGGTCGTGATTTCTTGGTGTTGGCA
CTTGTTTGTTAATTTTTGTTTGTCAGTACTATGTATTGGAAGAGAGACAA
CAATAAGATTTATCTTTCAGCCTCCTATCTTTCGCTACTCTCATATTCAT
CTCAATATTCAATATTCTCGATATTCATCTTTGTCAATGTGCAGAACAAG
AAGCTAAGGTGGCCGAAGTCCCCCCTTCACAGCTGCAGCGTGGTTGGTAA
CGGCGGAATACTGCTGGATAGCGGCTGTGGTCCAAATGTAGACTCCGCAA
AGGTCGTATTGAGGTGAGTTCTCCGTAAAAAGGTAGTTCACCATTCACCA
AGTACGCGTGCGCGAGGTCATTTGAAATGTGAAGGCCCTAACTTGAAAAC
AGTTCTTGTGTAGACTATGCGTTATACATGTCCAGGCTCCGTCGGTCGAT
TCACATAACAATGTCGTGGTGTGTTTTTGTGTGTGTGCTAGTGTCTCGGG
AGTCTTCACCTTTGACCTTGCGCACGCGTACTTGAAATATATAGTGATCC
CCTTATTCCTAAACATTTGCTGGGATGTGAGGTTGGGATGTTTTTTGTGT
GTGTCTCGGGAGTCTTCACCTTTGACCTTGCGCATGCGTACTTAGAATAT
ATAGTGATCCCCTTATTCCCAAACATTTGCTGGGATGTGAGGTTGGGATG
GTTTTTGTGTGTGTCTCGGGAGTCTTTACCTTTGACCTTGCGCATGCGTA
CTTAATATATAGTGATCCCTTATTCCTAAACATTTGCTGGGATGTGCATG
GCAAGAAGGATACTGTATCACCTTACAAGTATTAACCCCTATAATAGCAC
CATAGCTTTCTTAGTGGTGACTTGATATGGCGTGTCTATAGGATAAGACG
CAATACTAGTGAGATGGGGAATTATAGCATAAAGCACTGTGAATCTTTAT
ACCAAATTGAATGTTTTTAATGTCATTGGTATGTTGTAGAAAATTACTAA
AAAAAGTCTAGTATGAATTTCTAGCGGTACCGAGATTTCTATATCTATAT
GTGTGTGTGTGTGTGTGTGTG Coding sequence (CDS) from alignment at Sc0000060:125146..130016+ >transcript:BL81416_cuf2 ID=transcript:BL81416_cuf2|Name=transcript:BL81416_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2232bp|location=Sequence derived from alignment at Sc0000060:125146..130016+ (Branchiostoma lanceolatum)
ATGGAGGAAGACTGCGAAATCTCGGAGTCTGATACAGGACAACTGCACCT
CTCCGAGTCTTCTAACAACAGGCGACAAGTCAAGTCCTTACCTAGTAAGG
TGAAAGTTGAGCCACATCCCCAGGTTGCGCCTACGCCCCGGATATCAAAC
ACCCGGAGGAGTAGAAACACTAAACCGAACAAACAAGCGTACCTCAACCT
CCTCGGACAACTCAACGACTCTGCCGTATTAGCAAAACTCCAGGATGTAC
CGTACAACCATAGGAGGATAGATAAGTTAAGGAACGACATATTCAAAGAA
ACGCACATCAAACAGTACCTGTTTGCAAGTAAAGACAACACACCGCTGGG
CTCCCCACTACAGTTTTTCGAGGGAAGAAACAAAAGTGTTCACTACGCAG
TTCCAGAGTTACACAACATGCTGCCATCTCCTCAGAACAAGAAGCTAAGG
TGGCCGAAGTCCCCCCTTCACAGCTGCAGCGTGGTTGGTAACGGCGGAAT
ACTGCTGGATAGCGGCTGTGGTCCAAATGTAGACTCCGCAAAGGTCGTAT
TGAGGTGAATGGAGGAAGACTGCGAAATCTCGGAGTCTGATACAGGACAA
CTGCACCTCTCCGAGTCTTCTAACAACAGGCGACAAGTCAAGTCCTTACC
TAGTAAGGTGAAAGTTGAGCCACATCCCCAGGTTGCGCCTACGCCCCGGA
TATCAAACACCCGGAGGAGTAGAAACACTAAACCGAACAAACAAGCGTAC
CTCAACCTCCTCGGACAACTCAACGACTCTGCCGTATTAGCAAAACTCCA
GGATGTACCGTACAACCATAGGAGGATAGATAAGTTAAGGAACGACATAT
TCAAAGAAACGCACATCAAACAGTACCTGTTTGCAAGTAAAGACAACACA
CCGCTGGGCTCCCCACTACAGTTTTTCGAGGGAAGAAACAAAAGTGTTCA
CTACGCAGTTCCAGAGTTACACAACATGCTGCCATCTCCTCAGAACAAGA
AGCTAAGGTGGCCGAAGTCCCCCCTTCACAGCTGCAGCGTGGTTGGTAAC
GGCGGAATACTGCTGGATAGCGGCTGTGGTCCAAATGTAGACTCCGCAAA
GGTCGTATTGAGGTGAATGGAGGAAGACTGCGAAATCTCGGAGTCTGATA
CAGGACAACTGCACCTCTCCGAGTCTTCTAACAACAGGCGACAAGTCAAG
TCCTTACCTAGTAAGGTGAAAGTTGAGCCACATCCCCAGGTTGCGCCTAC
GCCCCGGATATCAAACACCCGGAGGAGTAGAAACACTAAACCGAACAAAC
AAGCGTACCTCAACCTCCTCGGACAACTCAACGACTCTGCCGTATTAGCA
AAACTCCAGGATGTACCGTACAACCATAGGAGGATAGATAAGTTAAGGAA
CGACATATTCAAAGAAACGCACATCAAACAGTACCTGTTTGCAAGTAAAG
ACAACACACCGCTGGGCTCCCCACTACAGTTTTTCGAGGGAAGAAACAAA
AGTGTTCACTACGCAGTTCCAGAGTTACACAACATGCTGCCATCTCCTCA
GAACAAGAAGCTAAGGTGGCCGAAGTCCCCCCTTCACAGCTGCAGCGTGG
TTGGTAACGGCGGAATACTGCTGGATAGCGGCTGTGGTCCAAATGTAGAC
TCCGCAAAGGTCGTATTGAGGTGAATGGAGGAAGACTGCGAAATCTCGGA
GTCTGATACAGGACAACTGCACCTCTCCGAGTCTTCTAACAACAGGCGAC
AAGTCAAGTCCTTACCTAGTAAGGTGAAAGTTGAGCCACATCCCCAGGTT
GCGCCTACGCCCCGGATATCAAACACCCGGAGGAGTAGAAACACTAAACC
GAACAAACAAGCGTACCTCAACCTCCTCGGACAACTCAACGACTCTGCCG
TATTAGCAAAACTCCAGGATGTACCGTACAACCATAGGAGGATAGATAAG
TTAAGGAACGACATATTCAAAGAAACGCACATCAAACAGTACCTGTTTGC
AAGTAAAGACAACACACCGCTGGGCTCCCCACTACAGTTTTTCGAGGGAA
GAAACAAAAGTGTTCACTACGCAGTTCCAGAGTTACACAACATGCTGCCA
TCTCCTCAGAACAAGAAGCTAAGGTGGCCGAAGTCCCCCCTTCACAGCTG
CAGCGTGGTTGGTAACGGCGGAATACTGCTGGATAGCGGCTGTGGTCCAA
ATGTAGACTCCGCAAAGGTCGTATTGAGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000060 | genome | Sc0000060:125146..130016 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81416_cuf2 |
| Biotype | protein_coding |
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