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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82343_cuf1 >transcript:BL82343_cuf1-protein ID=transcript:BL82343_cuf1-protein|Name=transcript:BL82343_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=192bp
MFPSLVFGDGPVLQISLAYHELSEIPADFHKHQDSLEILDLSHNKISSLM
PLMDFRRLNTLILDSNGLTSHVKFPPLPSLHTLWVNHNNITNLSVFIETV
AKYFPNLRFLSMMNNEAAPSYFNGGTVPQYLDYRQYVISQLPKLETLDDR
PISKDQREEAERIYGRRQSEDNKAKKKKSSRKKPPQRVENGR Run BLAST on NCBI mRNA from alignment at Sc0000007:7342103..7348316- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82343_cuf1 ID=transcript:BL82343_cuf1|Name=transcript:BL82343_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6214bp|location=Sequence derived from alignment at Sc0000007:7342103..7348316- (Branchiostoma lanceolatum)
GTGACCTTTGCCCTGTTTACAAACTCAGAGGATTCTGTATTTTGTTGTCT
GTCAAGAAAAGAAGAAGATCTCAGCGATTTTCCAGTTTCTTAAAGTGACA
AGGAAAAATCTTTAATCCAAGGAGCTTGTGAACGTTCAGAGAGGTCATGT
CATTGCTCAGAAATCGTGAGGAAAAGATCGTATCAGTACAGATGACGTGA
GTATTAATACAAGGCCTATGATTATCATGTGATAATTATTGATATTTTGT
AACCTTTATGATTATCACTCAACAACAGATTTATAATAACGACTATTCAA
CAGAAAGAAGACACAGTTAAATATTCATCTTTTTTTTTACAGATCAAGAC
TGAGATGACTTGATGTAAATTCTTCACCTGAATATTTATGCAGACATCTT
AAACTTTTAAGACACTGTTGAACAAGAAGTCAAGACTTGGAGACTACTCT
TAAGACTTGGAGTGAACTTTAAGATGTTTCCTTCGCTGGTGTTCGGAGAT
GGCCCTGTCCTCCAGATATCTCTGGCCTACCACGAGTTGTCGGAAATTCC
CGCTGACTTTCACAAGCACCAAGATTCGCTGGAGATCCTAGACTTAAGCC
ACAACAAGATTTCGTATCCTTGAAGGCGCAAGTCACATTCTTCTTACGAT
TTCTTTGGCTACACTCTTAGGGAGTGATACTAATAGTATAGTATTGTACA
TGTGCATATATTTATTGCATGTTCGCCTTTAAATTACTTAACACCAAAAT
AGGTTTATCAATTTCAATTTCCGCACAACTGTGCCGCTGTAATGTCAGCT
TTTTCAAAAGCAGTTGTTTGGAATGTCTGGGCGTGCAAATTTTTGTTTTG
AAGAAATTTTAACCTCTGAGGACATCTTGAAAAAGGGACAGTCAAACCCT
GGGGCATTGACCATCCTAGAAAGAGGGACAATCGCATTCCAGAGTTTGCT
GGATATACATGTTGTATTGTATATACTGATATTTTGCACAATTTATCCTT
GAATATCTTATAAAAAAGCACATTTTCTTTTTCTCTTTTCAAACTTTCGT
GACACAGTATTATATTATAAGTTAAGAATGGGAATGCTCTTAACATGCTT
AACACGCTTCCTTGGGTCTGCAGTCATATGGTCTTAATAAATAATTTTCA
TCATTTTCAGCCTATAATTCATCAATATTCCTTCTACCTTTATCATTATA
ATCATCATTATGTATATTATATTTATGTTGTTGTTGTTATTGTTACAATT
CTGAAGTTTTTAGCCCTTGACTAGATAATACAACAGGTCTCTGATGCCCT
TGATGGACTTCAGACGACTGAACACGCTTATCTTGGACAGCAACGGTCTG
ACGTCACACGTCAAGTTTCCCCCCCTCCCCAGTCTCCACACACTGTGGGT
CAACCACAACAACATCACCAACCTCTCCGTGTTCATCGAAACTGTCGCAA
AATACTTTCCAAACCTAAGGTATAGTATTAAGAACAGCACTGGGATGGTG
TTAGGGGATTTTCACGATTCCTTTTGAAATAAGCACACTGAGACATTTGC
ACCCAATTCTCTATCAGTTACAGAGTTACATAGGCAGCAGGAAGAGGGTT
AAAGCTGACAGCCCATTGACATTGTATGTGGAGCTTCAGGCTTTAGTCTC
AGGCATCAAACCTCTGCAGGTTAAAAGATTCCCCAGCACATTTGATTATT
GAGAACAAGCTGTGGCAAGGCTGCATTGCACTACTACTACTAGCTGTAGA
AAAAGCATGATTACACTTTGCATCACTCTGAGGTTGGCTAGACTTTGCTC
TATTACTAATTTGCCAAATGCTGGAGTCCCAATCCCAAAGAAGATTCGGG
CATTTTAAAGTTACATTGAAGATTTTCTATATGTTACAATGACCAACATA
TATTGTTTTGCTGTAGGTTCCTGAGTATGATGAACAATGAAGCAGCCCCG
AGTTACTTCAATGGTGGAACAGTCCCTCAGTACCTGGACTACAGGTGTGT
AGCCTATGTGAAGTTTTGTTTTTAGCACTAGTGTGTGGACAAGTGTTTGC
TGTATTATTAGCTTATTGTAAGGCTTGGACTGTGATGATGATTGGTTGAT
ACTAGTAGTAGTTATTGTTTGTCGGTCCCCTATTGGCTTTCCTTGACACT
GAAGCACAACTTCCCGCTTTGTATATCTCTTGTTCTGGATACAAGATCTT
GACTTTTGGAGTGCTATAGATAGTATTTCGGGCTGGGAAGAAGTGGTATC
ATTTTGGGCCCTTTTGTTTGAAATCCCCTTTGCAACATATTATAGTAGCT
GAGTGTTGCATTCTGATTTGATGCATTGACTTTACAAGCCTAGGGAAAAT
AATTATGCATCATAATCATGTCTTTCCCAAAGACAATACGTCATCAGTCA
GTTGCCAAAGCTGGAAACGCTGGACGATCGACCAATCAGCAAGGACCAGC
GGGAGGAAGCGGAGAGAATCTACGGTCGCAGACAAAGCGAAGACAACAAG
GCAAAGAAAAAGGTGACAGGCATTGTAGACACTTTCCTTTTGGGACCGCA
TTTGTAAGCAGAGACACCTATCGCTGCAGTACATAAGCGAACCAGTCAGA
ATTGCCCTGAAGAAGGTGACAGACGGTCACTGAAACGTCAGCTGAATAAA
ACACTTTTTTTACACAAACGCTTTTTTTATTCAGTATACTTATTACCAAC
CTGATGAAACTATTCATAGAACAGGCATTGTAATTTAGAGATTTTTGCAA
AGGACTTTCAGGCTCACCAGGTATATTATTATGATTTATGATTATAGTAT
GATGTATACATGTAGCATTATGATGATCGGTTTGTCAGTGATAATCACTG
CAAGTCTGCCGTTAGATTTCCATTTTAAACTATAATGTAGGGAAGACACT
TTTGAATTATCGGAGGCATGTCCTTTTTGACCAAAAAATCTGAAATTCTC
CAATACTAATAGTAATATAATATACATTCAGATATAGTAACTGGAACAAA
AAGAAAAACTTCCAGTTTTGTTCTTGTATTACAGAGAGAATAGAACGATC
CCATGCCAAAGCCTATTCAGAGCACCTCCGTCAAAAACAGCGTTGGCGGG
GAAGAAATGGCACGTGTAAAGTAGGGTACGTATATCTGGGACAGGTTTTC
CGCTGTATTGGTTGAATGCAATTGTTCAGAACCAAAACGAATTTAAAAAG
ACAATAGATCGGGCACTCAAGGAGAGGAAGCTTGTACCACATGCTGACTA
CTACAAAGTCCGCTAGCGCAGAGTTTATCGTCTCTTCAGTTACTGGNCTT
TTACTTCCCTGTTCACTTTCAAGTTAACCAGTTTCACACACCAGTAACTG
AAGAGACGAAACTCTGCGCTAGCGGACTTTGTAGTAGTCAGCATGTGGTA
CAAGCTTCCTCTCCTTGAGTGCCCGATCTATGCATTCACACAAACGCCCC
CTGTTCGATTTCGAACACCTCCGTCAAAAACAGGGTTTGACGGACCAAAC
ATGGCCGCCGCGGCTAGGTTGAAAATAATGCCACTGACTTCGGTTTAGCT
TTTGTGGCACTGAAACCCTTTCAGAGCGGGCCAAATAAGAATGCTATGTC
TTCTTTGTTGAAGGCTGTATCCACCGGGTAGAGTTGTTTAAGGAGGGGGT
AGATGTAGTTGCGGTGAGAGCGTAATGTTTTCGGTCAATGTTAAAGCGGT
ATGCGCCGCATAGCTTTCCCTTGTCGGTGGGCATCAGCGCCCAGTTTCTG
AGAAGCAGCCAATGCACGTGTAAAACAGGGTTCATATATCTGTGACAGGG
TTCCCACTATATTGACTGCATGCATAACAGCTGCATGGTATTTAGTAACT
AAGAATTAAAATGCATCCTTTTACTTCCCTGTTCACTTTCAAGTTAACCA
GTTTCACACACCAGTAACTGAAGATACAAAACTCTGCGCTAGCGGACTTT
GTAGTAAGTCAGCATGTGGTTCAAGCTTCCTCCCCTTGAGTGCCCGATCT
ATTTTCTTTTTAAATTCGTTTTTGTTCTGAGCATGCATTCAACCAATACA
GTGGAAAACCTGTCCCAGATATACGTACCCTGCTTTACACGTGCCATTTC
TGCCCCGCCAACGCTGCTTTTGACGGAGGTGCTCTGAATAGAACAGGGAG
TTCTATGGGTCTTCTATTCGTTCAATATGGTGTTCGACAGGATCGGTCTA
TTGAACAGGAGTTTGAGAGAGGCAGGTTTGGATGGACTTTTGTTGACTTA
CTGTTTGACATTTTTTTTTGCAGAAGTCATCAAGAAAGAAGCCACCACAG
CGTGTGGAAAACGGAAGATAAATAAGGCACTTCTAGCATTAACCATACTT
TGCAAAATAGAAATCAGGGAAACAAAGTTAAATATGTTGAACAATGATTA
GATTGACACAATGTATTTTAGACAATTGATAAACATTCAGGACTTACAAG
TTTTAACCTTTAGCACACTGAAGTAGCCATTTGGTACCCAATTTCCTATT
GGTTACAGAGTTAGGCAGCAGGGAGAAGGTTAATTACTTGAATTCAAGAG
ATTGCAAACCAAATTTCCTAATACATGTATCTGGGAGTTACTGCTGAAGA
TGTTTTGCTCATATGTCTTTGATTTGGGTGCTTCACAGTACATTTTTCAT
GTTTGAGTTGAGATTAAGTTATGGGAGACTGGCAACCTCAGTCTGTTTGT
TATTATGACTATAATAGAGTCTAAAGATTTACAACTTTGGAAAAATTATT
GTATAGCGCAGAGCTGCATGTCTCTAGGACCCGTCCTTCCGTCCAAGGAT
GGAAATTTTGCTTGTTAGGACCGAAAAAAATTCAACCCTGTCCGTCCAAA
AAATATCAGTTTCATGACCTAACACTGAATGGAAATGTATTTTGAATTTG
TAACCTTAGAATGACAGATTCAACATGTTGAAAGTTACAAACATGGGCTA
CCAAACAATGAGGGGAACGTAAAAAAATCCAAAGCTGGAGACAGCCCTGC
TATAGTGATAGCAACATTGAAAGCAGGTATACGTCTGGTACCTGTATTTT
CTTCAATGTCTTAATATTTTGATTAATGCCTTAAAGATGCATTATACTTT
TGATAGTAGGCTGACTAAATCAAGCTTCCAGTAGCCCTTCCACTGATAGC
CTCCCTGAAGCCCTCCCTCAGGGAGTAGACCCAATCAGCCCCTGACAGCA
AGAACTTGTGTAGCACAGGCTGGCAATCATAGAAAATATATGGGTGACTA
GTATGTAATGTATAAGACTTAGTACGGGAATTGTATACTTAATAGTAAAT
GTGTGCTCTGTGAGTACTTCAATGTATGATATTATAACATCAGGTGGATC
ATGGTTTGTAATTTTTGGGACCTGAACTTAATGCAAAATGCTTAATATAT
ATTATAGTTTATGATAATAACTATTTGTTGATAATTTAAACTTATGCTGT
TACATTTATGTAGTCACATCAGAATGCTATTTTGATTATTATGTTATATG
ATATTATGAGATGTTGAAAAGGTGTTTTGGAAAACATGGGTTGAGTGAAT
GGCTGTGTTATTAATGTTCATAAGTTTGTTCTGATTTGCAATGGTTAGGG
TCAGTCATGTTCCATGCATTCACACAAAGCCTTCAGAAGAATATTTGCTT
AAGTATTTTATCAGCTGGTTTCTTTGTTCTCATACTATTAAGATGAATAC
ATTGATTGCCTTGTCAACGTATAAGTGGAATACACATAACTATCAATTTC
CCTTTTGGTAGTTCATGATCAACATCTAAGAAGTTGACAGTTACTTAAAG
AATATGCAGTAAAATAAAGACCTTGACTTTATGACTGCCTATGACATCAC
AGTGAACATGGCGACCAGTTTGGAAACTAGCACTGCGGTTTGGGAAAAAG
GACTTTTTGGCAGCAAACGGTGCTTAATCATCGTGATTATGTGTACATCG
ATGTATTTGAAAGATATTAAAAAATTTACGGTTTATCTAAAGTATTTTTT
TTAGCTGCTATGCTGGGTTCCGAACTGGTCAGTGTGACGTCATCGGCAGT
CATAATTGGATTATTTTGCAACAAAAACCTCTGAAGTCTGATTTTCTGAT
GGTGCCGCATGTTCAATAACAGGAGAATGGTGTATATTTAATTCAAACGT
ATACATTTATGTTAATTGAACAATACTATCATAAAGATTGTTGAATGTAA
TAAAAATGCTGTAC Coding sequence (CDS) from alignment at Sc0000007:7342103..7348316- >transcript:BL82343_cuf1 ID=transcript:BL82343_cuf1|Name=transcript:BL82343_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2895bp|location=Sequence derived from alignment at Sc0000007:7342103..7348316- (Branchiostoma lanceolatum)
ATGTTTCCTTCGCTGGTGTTCGGAGATGGCCCTGTCCTCCAGATATCTCT
GGCCTACCACGAGTTGTCGGAAATTCCCGCTGACTTTCACAAGCACCAAG
ATTCGCTGGAGATCCTAGACTTAAGCCACAACAAGATTTCGTCTCTGATG
CCCTTGATGGACTTCAGACGACTGAACACGCTTATCTTGGACAGCAACGG
TCTGACGTCACACGTCAAGTTTCCCCCCCTCCCCAGTCTCCACACACTGT
GGGTCAACCACAACAACATCACCAACCTCTCCGTGTTCATCGAAACTGTC
GCAAAATACTTTCCAAACCTAAGGTTCCTGAGTATGATGAACAATGAAGC
AGCCCCGAGTTACTTCAATGGTGGAACAGTCCCTCAGTACCTGGACTACA
GACAATACGTCATCAGTCAGTTGCCAAAGCTGGAAACGCTGGACGATCGA
CCAATCAGCAAGGACCAGCGGGAGGAAGCGGAGAGAATCTACGGTCGCAG
ACAAAGCGAAGACAACAAGGCAAAGAAAAAGAAGTCATCAAGAAAGAAGC
CACCACAGCGTGTGGAAAACGGAAGATAAATGTTTCCTTCGCTGGTGTTC
GGAGATGGCCCTGTCCTCCAGATATCTCTGGCCTACCACGAGTTGTCGGA
AATTCCCGCTGACTTTCACAAGCACCAAGATTCGCTGGAGATCCTAGACT
TAAGCCACAACAAGATTTCGTCTCTGATGCCCTTGATGGACTTCAGACGA
CTGAACACGCTTATCTTGGACAGCAACGGTCTGACGTCACACGTCAAGTT
TCCCCCCCTCCCCAGTCTCCACACACTGTGGGTCAACCACAACAACATCA
CCAACCTCTCCGTGTTCATCGAAACTGTCGCAAAATACTTTCCAAACCTA
AGGTTCCTGAGTATGATGAACAATGAAGCAGCCCCGAGTTACTTCAATGG
TGGAACAGTCCCTCAGTACCTGGACTACAGACAATACGTCATCAGTCAGT
TGCCAAAGCTGGAAACGCTGGACGATCGACCAATCAGCAAGGACCAGCGG
GAGGAAGCGGAGAGAATCTACGGTCGCAGACAAAGCGAAGACAACAAGGC
AAAGAAAAAGAAGTCATCAAGAAAGAAGCCACCACAGCGTGTGGAAAACG
GAAGATAAATGTTTCCTTCGCTGGTGTTCGGAGATGGCCCTGTCCTCCAG
ATATCTCTGGCCTACCACGAGTTGTCGGAAATTCCCGCTGACTTTCACAA
GCACCAAGATTCGCTGGAGATCCTAGACTTAAGCCACAACAAGATTTCGT
CTCTGATGCCCTTGATGGACTTCAGACGACTGAACACGCTTATCTTGGAC
AGCAACGGTCTGACGTCACACGTCAAGTTTCCCCCCCTCCCCAGTCTCCA
CACACTGTGGGTCAACCACAACAACATCACCAACCTCTCCGTGTTCATCG
AAACTGTCGCAAAATACTTTCCAAACCTAAGGTTCCTGAGTATGATGAAC
AATGAAGCAGCCCCGAGTTACTTCAATGGTGGAACAGTCCCTCAGTACCT
GGACTACAGACAATACGTCATCAGTCAGTTGCCAAAGCTGGAAACGCTGG
ACGATCGACCAATCAGCAAGGACCAGCGGGAGGAAGCGGAGAGAATCTAC
GGTCGCAGACAAAGCGAAGACAACAAGGCAAAGAAAAAGAAGTCATCAAG
AAAGAAGCCACCACAGCGTGTGGAAAACGGAAGATAAATGTTTCCTTCGC
TGGTGTTCGGAGATGGCCCTGTCCTCCAGATATCTCTGGCCTACCACGAG
TTGTCGGAAATTCCCGCTGACTTTCACAAGCACCAAGATTCGCTGGAGAT
CCTAGACTTAAGCCACAACAAGATTTCGTCTCTGATGCCCTTGATGGACT
TCAGACGACTGAACACGCTTATCTTGGACAGCAACGGTCTGACGTCACAC
GTCAAGTTTCCCCCCCTCCCCAGTCTCCACACACTGTGGGTCAACCACAA
CAACATCACCAACCTCTCCGTGTTCATCGAAACTGTCGCAAAATACTTTC
CAAACCTAAGGTTCCTGAGTATGATGAACAATGAAGCAGCCCCGAGTTAC
TTCAATGGTGGAACAGTCCCTCAGTACCTGGACTACAGACAATACGTCAT
CAGTCAGTTGCCAAAGCTGGAAACGCTGGACGATCGACCAATCAGCAAGG
ACCAGCGGGAGGAAGCGGAGAGAATCTACGGTCGCAGACAAAGCGAAGAC
AACAAGGCAAAGAAAAAGAAGTCATCAAGAAAGAAGCCACCACAGCGTGT
GGAAAACGGAAGATAAATGTTTCCTTCGCTGGTGTTCGGAGATGGCCCTG
TCCTCCAGATATCTCTGGCCTACCACGAGTTGTCGGAAATTCCCGCTGAC
TTTCACAAGCACCAAGATTCGCTGGAGATCCTAGACTTAAGCCACAACAA
GATTTCGTCTCTGATGCCCTTGATGGACTTCAGACGACTGAACACGCTTA
TCTTGGACAGCAACGGTCTGACGTCACACGTCAAGTTTCCCCCCCTCCCC
AGTCTCCACACACTGTGGGTCAACCACAACAACATCACCAACCTCTCCGT
GTTCATCGAAACTGTCGCAAAATACTTTCCAAACCTAAGGTTCCTGAGTA
TGATGAACAATGAAGCAGCCCCGAGTTACTTCAATGGTGGAACAGTCCCT
CAGTACCTGGACTACAGACAATACGTCATCAGTCAGTTGCCAAAGCTGGA
AACGCTGGACGATCGACCAATCAGCAAGGACCAGCGGGAGGAAGCGGAGA
GAATCTACGGTCGCAGACAAAGCGAAGACAACAAGGCAAAGAAAAAGAAG
TCATCAAGAAAGAAGCCACCACAGCGTGTGGAAAACGGAAGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000007 | genome | Sc0000007:7342103..7348316 - |
Properties
| Property Name | Value |
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| Transcript id | BL82343_cuf1 |
| Biotype | protein_coding |
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