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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82645_cuf0 >transcript:BL82645_cuf0-protein ID=transcript:BL82645_cuf0-protein|Name=transcript:BL82645_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=402bp
MDSRTKGDGTRIKSSSLKRPRDSTSPPLPAHVVSTKRLKESKDWQTDNVA
GPSGIMALPGANVTHFSTADDSDSVDSDTDDSDEEGHDPTTVSAFLGSGS
KPVVLMLNDEYGTSKGGVSTIHRQMTRQLVIKGAKVYSTVLHATQKDKDD
AAADGVRLIFPETEDDDTTPNLEWLTRHHLTYYPKLPSDVDFIVGHVNVT
SRAARMIKNKRLRRADLVQVTHVIPEDTSHYKSQEKVLRIGKEHDSILED
LKDAMVVFSVGPLIHDYYTHETRQIKQLKRHLFLPKPSDIFIEANFEPPD
DSNTIYGTVLSVGRVKGMVRQKGYDLVALAMGDVIKDKDLPQTKCRLCGI
NKEDFEETQEIINANKGRFEFVPFTPLEYCTQEKVCEEMGRADVVLMVSR
AE Run BLAST on NCBI mRNA from alignment at Sc0000044:866134..868765+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82645_cuf0 ID=transcript:BL82645_cuf0|Name=transcript:BL82645_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2632bp|location=Sequence derived from alignment at Sc0000044:866134..868765+ (Branchiostoma lanceolatum)
GACATAGATGAGGAAGATGTATACCCCTTTCACATCAAGCTGGCTGTTAT
CTATGTTTAGGTTTATTCAAGCGACGCCACACCGCTGAAGGATCTGACAG
CGGACTGTCAACACCAACAAGGGAGTCGGTGACGGAAAGCAAGACAAGCC
GGCAGTCCGATGATGGAGCAGGGCCCAGCGGGGTCCATATGGATTCAAGG
ACAAAAGGTGGATATTACTTTTTGCTGGGGGTGAAACAGTCACAAATAAA
ATAAAAAGCTTATGATGACAAATCTTGATCACTTTCGATGACGTCAATAT
CATTGTTTCTTGTTCGATGTCAGGTGATGGTACCAGAATAAAAAGCTCTT
CTCTGAAAAGACCGAGAGACAGCACTAGCCCACCTCTACCTGCACATGTG
GTTTCGACAAAGAGGCTAAAAGAATCAAAAGACTGGCAGACAGACAATGT
AGCAGGGCCAAGTGGAATCATGGCGCTTCCAGGGGCAAATGGTAATGATT
TATATCTACCAATCTATTCCTATATAAAACCTCATAGGTCCTATTTTCAA
TGTGTGTTGCGTTTTATCCAAGCCAACCATATTTCAAAACAGAGCTGTAG
TGAGCATATTCATTGTGTATCATTCGAACATACTAGTACAAGTATGTTCA
GCTTTGCTTATCAACGTTCAGGAATCCATGTTCATTTAGTTAAGATTTAG
TTAAGATTTGAGATTCAAAAGGTGTCACACTTATTTCGTTATTTCATTCC
TAATCTCTGATGTTTACTTTCAAGTTATATCAGCATGTGATGACTGAGAA
TCGAAGTGGACGGTTGTGGTTCGGAATACCAATCAGAATCAATCTAACTA
GCTGTTGTATTTAACACAGTTACTCATTTCTCGACTGCCGATGACAGTGA
CAGTGTGGATTCGGACACAGACGATTCTGATGAGGAGGGTCATGACCCTA
CGACGGTCTCGGGTAAAGAAACGCCTATGTCATTTTGCAAAGCATCTAGT
AAAATGTAGGCAGTGAAGCATAGGCAACGAATTAACATCGAAAGTATTCA
GAACCAGCATCTAATTTCTGCAGTTTACTTTCACCTAGTATGTTACTTTG
AGCAAGAGGATCAGGAAAAGGTATCAATAACTTTCCTCGAAACTAACACC
ACTATAGACATCTCTAGGGGAAAGAATATTCAACGATATTTTTTTGGGAG
GAGGTTAGGGTGGGTCTTAAGATTGGCTCTCAATTAAGTGATAAACAGCT
ATGTTCAACAGTTTACATGTCTTGAATCCAAAGCATCCAAACGTAGCCTC
CTTCGTTTTAAGGAAATATATGCAACAATGTTTAGATGTAAAAAAATTTG
ATTCAAAACAAAACATTACTACGCCTTTTTGCGAGAGACCATTTATTATA
GCAAACCTAAGTTGGAACTCCAGTCCTCAAATAAGCAGAATAACGTTGCA
ATGAAAGGCAACTGTAAAAATAGTGGGAATTCGAAAATACCACTTTTTGC
ATTTTCTGATTGAACGTTTGTATTTGGCATTTAAAAAAAGCTCAGACGTG
GTTTGTGTCTTATCTTACAGCCCTTATATATCATGTGAGCAAAGAATTTC
TGAAACTTAAACCATAGTTGGCAAACTAATATATTGTATGATGAAAACCA
ATTATTCGAGCTGACAAGAAAACTCTCAGTTTTAAAACTGTTGATTTACT
TTGAAGCGTTTTTAGGATCTGGAAGTAAGCCTGTCGTGTTGATGCTTAAT
GACGAGTACGGAACTTCGAAAGGAGGCGTATCCACCATCCACCGCCAGAT
GACGCGCCAACTCGTCATAAAAGGAGCAAAGGTGTACAGCACAGTCCTAC
ATGCGACACAGAAGGACAAGGACGACGCAGCTGCTGATGGAGTTCGGCTG
ATCTTTCCAGAAACAGAAGATGACGACACAACTCCTAACCTCGAGTGGTT
GACACGGCATCATCTGACTTATTATCCAAAACTCCCTTCAGATGTAGACT
TCATCGTCGGCCATGTTAACGTCACGAGCCGCGCAGCAAGAATGATAAAG
AACAAACGCCTTCGTCGCGCCGACCTCGTCCAAGTGACGCACGTCATCCC
TGAAGACACGAGCCACTACAAGAGTCAGGAGAAAGTGCTTAGGATAGGAA
AGGAGCATGACAGCATTCTGGAAGACCTAAAAGATGCAATGGTTGTCTTC
TCAGTCGGTCCATTGATACACGACTACTACACGCATGAGACAAGGCAAAT
AAAACAACTGAAACGTCATCTGTTCTTGCCTAAGCCGTCTGACATCTTCA
TTGAAGCGAATTTTGAACCACCCGATGACAGTAACACAATATATGGAACG
GTGCTGTCCGTCGGTAGAGTCAAGGGTATGGTGAGGCAGAAAGGCTACGA
TCTTGTCGCACTGGCCATGGGAGATGTGATCAAGGACAAGGACCTTCCCC
AAACGAAGTGTCGACTATGCGGTATCAATAAAGAAGATTTTGAAGAAACC
CAGGAGATCATCAATGCCAACAAGGGTAGATTCGAGTTCGTACCCTTTAC
TCCTCTGGAGTATTGCACACAGGAAAAGGTGTGTGAAGAGATGGGAAGGG
CCGATGTCGTTCTGATGGTGTCTCGTGCCGAG Coding sequence (CDS) from alignment at Sc0000044:866134..868765+ >transcript:BL82645_cuf0 ID=transcript:BL82645_cuf0|Name=transcript:BL82645_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4824bp|location=Sequence derived from alignment at Sc0000044:866134..868765+ (Branchiostoma lanceolatum)
ATGGATTCAAGGACAAAAGGTGATGGTACCAGAATAAAAAGCTCTTCTCT
GAAAAGACCGAGAGACAGCACTAGCCCACCTCTACCTGCACATGTGGTTT
CGACAAAGAGGCTAAAAGAATCAAAAGACTGGCAGACAGACAATGTAGCA
GGGCCAAGTGGAATCATGGCGCTTCCAGGGGCAAATGTTACTCATTTCTC
GACTGCCGATGACAGTGACAGTGTGGATTCGGACACAGACGATTCTGATG
AGGAGGGTCATGACCCTACGACGGTCTCGGCGTTTTTAGGATCTGGAAGT
AAGCCTGTCGTGTTGATGCTTAATGACGAGTACGGAACTTCGAAAGGAGG
CGTATCCACCATCCACCGCCAGATGACGCGCCAACTCGTCATAAAAGGAG
CAAAGGTGTACAGCACAGTCCTACATGCGACACAGAAGGACAAGGACGAC
GCAGCTGCTGATGGAGTTCGGCTGATCTTTCCAGAAACAGAAGATGACGA
CACAACTCCTAACCTCGAGTGGTTGACACGGCATCATCTGACTTATTATC
CAAAACTCCCTTCAGATGTAGACTTCATCGTCGGCCATGTTAACGTCACG
AGCCGCGCAGCAAGAATGATAAAGAACAAACGCCTTCGTCGCGCCGACCT
CGTCCAAGTGACGCACGTCATCCCTGAAGACACGAGCCACTACAAGAGTC
AGGAGAAAGTGCTTAGGATAGGAAAGGAGCATGACAGCATTCTGGAAGAC
CTAAAAGATGCAATGGTTGTCTTCTCAGTCGGTCCATTGATACACGACTA
CTACACGCATGAGACAAGGCAAATAAAACAACTGAAACGTCATCTGTTCT
TGCCTAAGCCGTCTGACATCTTCATTGAAGCGAATTTTGAACCACCCGAT
GACAGTAACACAATATATGGAACGGTGCTGTCCGTCGGTAGAGTCAAGGG
TATGGTGAGGCAGAAAGGCTACGATCTTGTCGCACTGGCCATGGGAGATG
TGATCAAGGACAAGGACCTTCCCCAAACGAAGTGTCGACTATGCGGTATC
AATAAAGAAGATTTTGAAGAAACCCAGGAGATCATCAATGCCAACAAGGG
TAGATTCGAGTTCGTACCCTTTACTCCTCTGGAGTATTGCACACAGGAAA
AGGTGTGTGAAGAGATGGGAAGGGCCGATGTCGTTCTGATGGTGTCTCGT
GCCGAGATGGATTCAAGGACAAAAGGTGATGGTACCAGAATAAAAAGCTC
TTCTCTGAAAAGACCGAGAGACAGCACTAGCCCACCTCTACCTGCACATG
TGGTTTCGACAAAGAGGCTAAAAGAATCAAAAGACTGGCAGACAGACAAT
GTAGCAGGGCCAAGTGGAATCATGGCGCTTCCAGGGGCAAATGTTACTCA
TTTCTCGACTGCCGATGACAGTGACAGTGTGGATTCGGACACAGACGATT
CTGATGAGGAGGGTCATGACCCTACGACGGTCTCGGCGTTTTTAGGATCT
GGAAGTAAGCCTGTCGTGTTGATGCTTAATGACGAGTACGGAACTTCGAA
AGGAGGCGTATCCACCATCCACCGCCAGATGACGCGCCAACTCGTCATAA
AAGGAGCAAAGGTGTACAGCACAGTCCTACATGCGACACAGAAGGACAAG
GACGACGCAGCTGCTGATGGAGTTCGGCTGATCTTTCCAGAAACAGAAGA
TGACGACACAACTCCTAACCTCGAGTGGTTGACACGGCATCATCTGACTT
ATTATCCAAAACTCCCTTCAGATGTAGACTTCATCGTCGGCCATGTTAAC
GTCACGAGCCGCGCAGCAAGAATGATAAAGAACAAACGCCTTCGTCGCGC
CGACCTCGTCCAAGTGACGCACGTCATCCCTGAAGACACGAGCCACTACA
AGAGTCAGGAGAAAGTGCTTAGGATAGGAAAGGAGCATGACAGCATTCTG
GAAGACCTAAAAGATGCAATGGTTGTCTTCTCAGTCGGTCCATTGATACA
CGACTACTACACGCATGAGACAAGGCAAATAAAACAACTGAAACGTCATC
TGTTCTTGCCTAAGCCGTCTGACATCTTCATTGAAGCGAATTTTGAACCA
CCCGATGACAGTAACACAATATATGGAACGGTGCTGTCCGTCGGTAGAGT
CAAGGGTATGGTGAGGCAGAAAGGCTACGATCTTGTCGCACTGGCCATGG
GAGATGTGATCAAGGACAAGGACCTTCCCCAAACGAAGTGTCGACTATGC
GGTATCAATAAAGAAGATTTTGAAGAAACCCAGGAGATCATCAATGCCAA
CAAGGGTAGATTCGAGTTCGTACCCTTTACTCCTCTGGAGTATTGCACAC
AGGAAAAGGTGTGTGAAGAGATGGGAAGGGCCGATGTCGTTCTGATGGTG
TCTCGTGCCGAGATGGATTCAAGGACAAAAGGTGATGGTACCAGAATAAA
AAGCTCTTCTCTGAAAAGACCGAGAGACAGCACTAGCCCACCTCTACCTG
CACATGTGGTTTCGACAAAGAGGCTAAAAGAATCAAAAGACTGGCAGACA
GACAATGTAGCAGGGCCAAGTGGAATCATGGCGCTTCCAGGGGCAAATGT
TACTCATTTCTCGACTGCCGATGACAGTGACAGTGTGGATTCGGACACAG
ACGATTCTGATGAGGAGGGTCATGACCCTACGACGGTCTCGGCGTTTTTA
GGATCTGGAAGTAAGCCTGTCGTGTTGATGCTTAATGACGAGTACGGAAC
TTCGAAAGGAGGCGTATCCACCATCCACCGCCAGATGACGCGCCAACTCG
TCATAAAAGGAGCAAAGGTGTACAGCACAGTCCTACATGCGACACAGAAG
GACAAGGACGACGCAGCTGCTGATGGAGTTCGGCTGATCTTTCCAGAAAC
AGAAGATGACGACACAACTCCTAACCTCGAGTGGTTGACACGGCATCATC
TGACTTATTATCCAAAACTCCCTTCAGATGTAGACTTCATCGTCGGCCAT
GTTAACGTCACGAGCCGCGCAGCAAGAATGATAAAGAACAAACGCCTTCG
TCGCGCCGACCTCGTCCAAGTGACGCACGTCATCCCTGAAGACACGAGCC
ACTACAAGAGTCAGGAGAAAGTGCTTAGGATAGGAAAGGAGCATGACAGC
ATTCTGGAAGACCTAAAAGATGCAATGGTTGTCTTCTCAGTCGGTCCATT
GATACACGACTACTACACGCATGAGACAAGGCAAATAAAACAACTGAAAC
GTCATCTGTTCTTGCCTAAGCCGTCTGACATCTTCATTGAAGCGAATTTT
GAACCACCCGATGACAGTAACACAATATATGGAACGGTGCTGTCCGTCGG
TAGAGTCAAGGGTATGGTGAGGCAGAAAGGCTACGATCTTGTCGCACTGG
CCATGGGAGATGTGATCAAGGACAAGGACCTTCCCCAAACGAAGTGTCGA
CTATGCGGTATCAATAAAGAAGATTTTGAAGAAACCCAGGAGATCATCAA
TGCCAACAAGGGTAGATTCGAGTTCGTACCCTTTACTCCTCTGGAGTATT
GCACACAGGAAAAGGTGTGTGAAGAGATGGGAAGGGCCGATGTCGTTCTG
ATGGTGTCTCGTGCCGAGATGGATTCAAGGACAAAAGGTGATGGTACCAG
AATAAAAAGCTCTTCTCTGAAAAGACCGAGAGACAGCACTAGCCCACCTC
TACCTGCACATGTGGTTTCGACAAAGAGGCTAAAAGAATCAAAAGACTGG
CAGACAGACAATGTAGCAGGGCCAAGTGGAATCATGGCGCTTCCAGGGGC
AAATGTTACTCATTTCTCGACTGCCGATGACAGTGACAGTGTGGATTCGG
ACACAGACGATTCTGATGAGGAGGGTCATGACCCTACGACGGTCTCGGCG
TTTTTAGGATCTGGAAGTAAGCCTGTCGTGTTGATGCTTAATGACGAGTA
CGGAACTTCGAAAGGAGGCGTATCCACCATCCACCGCCAGATGACGCGCC
AACTCGTCATAAAAGGAGCAAAGGTGTACAGCACAGTCCTACATGCGACA
CAGAAGGACAAGGACGACGCAGCTGCTGATGGAGTTCGGCTGATCTTTCC
AGAAACAGAAGATGACGACACAACTCCTAACCTCGAGTGGTTGACACGGC
ATCATCTGACTTATTATCCAAAACTCCCTTCAGATGTAGACTTCATCGTC
GGCCATGTTAACGTCACGAGCCGCGCAGCAAGAATGATAAAGAACAAACG
CCTTCGTCGCGCCGACCTCGTCCAAGTGACGCACGTCATCCCTGAAGACA
CGAGCCACTACAAGAGTCAGGAGAAAGTGCTTAGGATAGGAAAGGAGCAT
GACAGCATTCTGGAAGACCTAAAAGATGCAATGGTTGTCTTCTCAGTCGG
TCCATTGATACACGACTACTACACGCATGAGACAAGGCAAATAAAACAAC
TGAAACGTCATCTGTTCTTGCCTAAGCCGTCTGACATCTTCATTGAAGCG
AATTTTGAACCACCCGATGACAGTAACACAATATATGGAACGGTGCTGTC
CGTCGGTAGAGTCAAGGGTATGGTGAGGCAGAAAGGCTACGATCTTGTCG
CACTGGCCATGGGAGATGTGATCAAGGACAAGGACCTTCCCCAAACGAAG
TGTCGACTATGCGGTATCAATAAAGAAGATTTTGAAGAAACCCAGGAGAT
CATCAATGCCAACAAGGGTAGATTCGAGTTCGTACCCTTTACTCCTCTGG
AGTATTGCACACAGGAAAAGGTGTGTGAAGAGATGGGAAGGGCCGATGTC
GTTCTGATGGTGTCTCGTGCCGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:866134..868765 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82645_cuf0 |
| Biotype | protein_coding |
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