transcript:BL82929_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82929_cuf0
Unique Nametranscript:BL82929_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82929_cuf0

>transcript:BL82929_cuf0-protein ID=transcript:BL82929_cuf0-protein|Name=transcript:BL82929_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=202bp
PSDVTSTAGLTMATHVQSGASSQVDDDSTRTSHQQAVGFANTSQGGGIVA
FTIQGGVHPSTSIGEELTIRSQPSSSVASSTQEQQGIMVASNSASNSLAA
VTFLPATIQAGTMSSQVMASSAQALQLGEEGQGVMVSADGGPTAIQSVRD
TGVPGTGVLVEPSVSVTNTISSVLVSQESIQGNPGDLTEITAYEIPTVQE
QD
Run BLAST on NCBI

mRNA from alignment at xfSc0030088:2..610+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82929_cuf0 ID=transcript:BL82929_cuf0|Name=transcript:BL82929_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=609bp|location=Sequence derived from alignment at xfSc0030088:2..610+ (Branchiostoma lanceolatum)
CACCATCAGACGTAACAAGCACAGCTGGACTCACAATGGCAACACACGTC CAATCAGGAGCCTCCTCTCAGGTGGACGACGACAGCACCCGCACCTCTCA CCAACAGGCTGTGGGATTCGCTAACACCTCCCAGGGGGGTGGCATTGTAG CTTTCACCATCCAGGGGGGAGTCCACCCGTCAACGAGTATCGGGGAGGAG CTCACAATACGATCCCAGCCATCCAGTAGTGTGGCGTCGTCCACACAGGA ACAACAAGGGATTATGGTCGCATCCAACAGCGCTTCGAATTCGTTAGCAG CGGTGACCTTCCTGCCAGCGACCATCCAAGCAGGCACCATGTCTTCCCAA GTCATGGCGAGCTCCGCCCAGGCGCTACAGCTAGGGGAGGAAGGACAGGG GGTCATGGTGTCGGCGGACGGAGGTCCCACGGCGATACAGTCTGTCCGAG ACACGGGAGTGCCGGGGACAGGGGTGCTGGTGGAACCGAGCGTCTCCGTC ACCAACACCATCTCCTCGGTCCTCGTGTCGCAGGAATCCATCCAGGGCAA CCCCGGGGACCTGACCGAGATCACCGCGTACGAAATCCCGACCGTACAGG AACAGGACG

Coding sequence (CDS) from alignment at xfSc0030088:2..610+

>transcript:BL82929_cuf0 ID=transcript:BL82929_cuf0|Name=transcript:BL82929_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=606bp|location=Sequence derived from alignment at xfSc0030088:2..610+ (Branchiostoma lanceolatum)
CCATCAGACGTAACAAGCACAGCTGGACTCACAATGGCAACACACGTCCA
ATCAGGAGCCTCCTCTCAGGTGGACGACGACAGCACCCGCACCTCTCACC
AACAGGCTGTGGGATTCGCTAACACCTCCCAGGGGGGTGGCATTGTAGCT
TTCACCATCCAGGGGGGAGTCCACCCGTCAACGAGTATCGGGGAGGAGCT
CACAATACGATCCCAGCCATCCAGTAGTGTGGCGTCGTCCACACAGGAAC
AACAAGGGATTATGGTCGCATCCAACAGCGCTTCGAATTCGTTAGCAGCG
GTGACCTTCCTGCCAGCGACCATCCAAGCAGGCACCATGTCTTCCCAAGT
CATGGCGAGCTCCGCCCAGGCGCTACAGCTAGGGGAGGAAGGACAGGGGG
TCATGGTGTCGGCGGACGGAGGTCCCACGGCGATACAGTCTGTCCGAGAC
ACGGGAGTGCCGGGGACAGGGGTGCTGGTGGAACCGAGCGTCTCCGTCAC
CAACACCATCTCCTCGGTCCTCGTGTCGCAGGAATCCATCCAGGGCAACC
CCGGGGACCTGACCGAGATCACCGCGTACGAAATCCCGACCGTACAGGAA
CAGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82929gene:BL82929Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82929_cuf0-E1BL82929_cuf0-E1-1564476830-547913Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82929_cuf0transcript:BL82929_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0030088genomexfSc0030088:2..610 +
Properties
Property NameValue
Transcript idBL82929_cuf0
Biotypeprotein_coding