transcript:BL84561_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84561_cuf0
Unique Nametranscript:BL84561_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84561_cuf0

>transcript:BL84561_cuf0-protein ID=transcript:BL84561_cuf0-protein|Name=transcript:BL84561_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
WGPWSGCSVTCGVGTRSRDRICTNPAPANGGEDCTGQARETEQCNSGTLC
QVDGGWSNWSPWSDCSVTCGVGTRSRDRTCTSPAPANAGADCAGQAQETQ
QCSTG
Run BLAST on NCBI

mRNA from alignment at Sc0000141:499329..499810-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84561_cuf0 ID=transcript:BL84561_cuf0|Name=transcript:BL84561_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=482bp|location=Sequence derived from alignment at Sc0000141:499329..499810- (Branchiostoma lanceolatum)
ACTGGGGTCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTCGGTACGAGG
TCTCGGGACAGGATCTGCACCAATCCTGCACCAGCTAACGGTGGGGAGGA
CTGTACTGGGCAAGCTCGGGAGACAGAGCAGTGCAACTCAGGGACGTTAT
GTCAAGGTAAGTCTAAGTTGTATTGTTGTATCTCCTGTATCTCCGATTGA
CTCTTCTGGTAATTATAAAACACAGCACTCACATGTCCGAAATTTACGTG
CTAGTTGTCATATGCCATTTGGTATGAGTTAAACATAAATTCCATGATTT
GTGCTATGTTTTTGTTGTAGTTGATGGAGGCTGGTCAAACTGGAGTCCAT
GGTCCGACTGCAGTGTAACGTGTGGGGTTGGTACGAGGTCTCGGGACCGA
ACTTGCACCAGCCCTGCACCAGCTAACGCTGGGGCGGACTGTGCTGGACA
AGCTCAGGAGACACAACAGTGCAGCACGGGAG

Coding sequence (CDS) from alignment at Sc0000141:499329..499810-

>transcript:BL84561_cuf0 ID=transcript:BL84561_cuf0|Name=transcript:BL84561_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=630bp|location=Sequence derived from alignment at Sc0000141:499329..499810- (Branchiostoma lanceolatum)
TGGGGTCCATGGTCCGGCTGCAGCGTGACGTGTGGAGTCGGTACGAGGTC
TCGGGACAGGATCTGCACCAATCCTGCACCAGCTAACGGTGGGGAGGACT
GTACTGGGCAAGCTCGGGAGACAGAGCAGTGCAACTCAGGGACGTTATGT
CAAGTTGATGGAGGCTGGTCAAACTGGAGTCCATGGTCCGACTGCAGTGT
AACGTGTGGGGTTGGTACGAGGTCTCGGGACCGAACTTGCACCAGCCCTG
CACCAGCTAACGCTGGGGCGGACTGTGCTGGACAAGCTCAGGAGACACAA
CAGTGCAGCACGGGATGGGGTCCATGGTCCGGCTGCAGCGTGACGTGTGG
AGTCGGTACGAGGTCTCGGGACAGGATCTGCACCAATCCTGCACCAGCTA
ACGGTGGGGAGGACTGTACTGGGCAAGCTCGGGAGACAGAGCAGTGCAAC
TCAGGGACGTTATGTCAAGTTGATGGAGGCTGGTCAAACTGGAGTCCATG
GTCCGACTGCAGTGTAACGTGTGGGGTTGGTACGAGGTCTCGGGACCGAA
CTTGCACCAGCCCTGCACCAGCTAACGCTGGGGCGGACTGTGCTGGACAA
GCTCAGGAGACACAACAGTGCAGCACGGGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84561gene:BL84561Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84561_cuf0-E1BL84561_cuf0-E1-1564476830-341764Branchiostoma lanceolatumexon
BL84561_cuf0-E2BL84561_cuf0-E2-1564476830-341761Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84561_cuf0transcript:BL84561_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000141genomeSc0000141:499329..499810 -
Properties
Property NameValue
Transcript idBL84561_cuf0
Biotypeprotein_coding