transcript:BL84575_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84575_cuf0
Unique Nametranscript:BL84575_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84575_cuf0

>transcript:BL84575_cuf0-protein ID=transcript:BL84575_cuf0-protein|Name=transcript:BL84575_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=142bp
HTHTHTHTHTHTPLSIRSLITLVRHCLLVYIYGVLTGKGTPIDGQIIVLR
VLRNVTDDSCSRRXXTHTHTHTHTHTHTVVDQKFDYTCETLFTSVYLWRF
DWKWNADRRPIHCSTCSKERHRRQLFQKASVASLLLRHLCLV
Run BLAST on NCBI

mRNA from alignment at Sc0000333:7432..8557-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84575_cuf0 ID=transcript:BL84575_cuf0|Name=transcript:BL84575_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1126bp|location=Sequence derived from alignment at Sc0000333:7432..8557- (Branchiostoma lanceolatum)
CACACACACACACACACACACACACACACACACACACCGTTGTCGATCAG
AAGTTTGATTACACTTGTGAGACATTGCTTACTAGTGTATATTTATGGCG
TTTTGACTGGAAAAGGAACGCCGATCGACGGCCAAATCATTGTTCTACGT
GTTCTAAGGAACGTCACAGACGACAGTTGTTCCAGAAGGCNNNNCACACA
CACACACACACACACACACACACACACACACACCGTTGTCGATCAGAAGT
TTGATTACACTTGTGAGACATTGTTTACTAGTGTATATCTATGGCGTTTT
GACTGGAAATGGAACGCCGATCGACGGCCAATTCATTGTTCTACGTGTTC
TAAGGAACGTCACAGACGACAGTTGTTCCAGAAGGCGAGTGTCGCAAGCT
TGTTGTTGCGTCACCTTTGCTTGGTGTAATAAGAACGTGTGCAGACTTTT
ATTACGTCAAAATTCACTTTCTTTGTTGTTTGTTTTCTGTCATGATCATT
CTGTTGTTTTTGTAGTTGTTGTGTGTTTTCCAGGTCAGTTCTGTACTGTT
TTATGTCGCCTGCGATCCCAGGTTAGTGGCGTGTGCGTGGGTTGTGTGTA
GTCGCTATTTCGACTAGAATGTGATTGCTNTGCTATAGCTCTTTTGTGTG
GATGTGGGTGGCCTTGAAAAAGGCCGGGGTTTTGTCGTGCAGAGGCGTCG
GTCGATTTACTTGGAGCTGGTGTACTTGGTGACGGCCTTGGTTCCCTCGC
TGACGGCGTGCTTGGCCAGCTCGCCCGGCAACAGGAGTCGCACGGCGGTC
TGGATCTCGCGGCTGCTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGTCG
AGAAGCTTCGGCAGCGATTCTCTCGAAAATGTCGTTGACGAAGGAGTTCA
TGATGCCCATGGCCTTGCTAGAGACGCCGGTGTCGGGGTGCACCTGCTTG
AGCACCTTGTAGATGTAGACGCCGAAGGTTTCCCTTCTCTTTCTCCTCCT
TCCGCGCTTCTTGTCTCCTGCGGGCCTGGCCTTGCCAGCTTTCTTGGCGG
CTTTTCCACTTGGTGGCATGACGAAGACGTTCTTGGAGTGTTTAGACAGC
AAAGAATATAATCGCACTCGTCTCGG

Coding sequence (CDS) from alignment at Sc0000333:7432..8557-

>transcript:BL84575_cuf0 ID=transcript:BL84575_cuf0|Name=transcript:BL84575_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=429bp|location=Sequence derived from alignment at Sc0000333:7432..8557- (Branchiostoma lanceolatum)
CACACACACACACACACACACACACACACACACACACCGTTGTCGATCAG
AAGTTTGATTACACTTGTGAGACATTGCTTACTAGTGTATATTTATGGCG
TTTTGACTGGAAAAGGAACGCCGATCGACGGCCAAATCATTGTTCTACGT
GTTCTAAGGAACGTCACAGACGACAGTTGTTCCAGAAGGCNNNNCACACA
CACACACACACACACACACACACACACACACACCGTTGTCGATCAGAAGT
TTGATTACACTTGTGAGACATTGTTTACTAGTGTATATCTATGGCGTTTT
GACTGGAAATGGAACGCCGATCGACGGCCAATTCATTGTTCTACGTGTTC
TAAGGAACGTCACAGACGACAGTTGTTCCAGAAGGCGAGTGTCGCAAGCT
TGTTGTTGCGTCACCTTTGCTTGGTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84575gene:BL84575Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84575_cuf0-E1BL84575_cuf0-E1-1564476830-440120Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84575_cuf0transcript:BL84575_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000333genomeSc0000333:7432..8557 -
Properties
Property NameValue
Transcript idBL84575_cuf0
Biotypeprotein_coding