transcript:BL84617_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84617_cuf0
Unique Nametranscript:BL84617_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84617_cuf0

>transcript:BL84617_cuf0-protein ID=transcript:BL84617_cuf0-protein|Name=transcript:BL84617_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=212bp
GTNFMLLFFVVRYKENRRKLVGSPTRHKRPQSLETTMSKNLDKSVTSLTV
TPKSTSRVSITASQQSNGTKKPPKGTQIVVTFTKHESAKRPKTCREPGAA
TIEDTDTSLEGNYNDMSKNRQPDVCGEESSGDRKDCGDRRAKSRAIENEM
SALNESKSSRPKRNHGAVAFDCDLTIMDSPKDDEVSADGENSEITLNSIK
KTSCNKQRKRLR
Run BLAST on NCBI

mRNA from alignment at xfSc0007753:424..1062-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84617_cuf0 ID=transcript:BL84617_cuf0|Name=transcript:BL84617_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=639bp|location=Sequence derived from alignment at xfSc0007753:424..1062- (Branchiostoma lanceolatum)
CGGGCACCAATTTCATGTTACTGTTCTTTGTTGTCAGGTACAAGGAAAAC CGCCGTAAGTTGGTTGGATCACCGACGAGACACAAACGACCGCAGAGTCT GGAAACAACGATGTCCAAGAACCTGGACAAGTCAGTGACTTCTTTGACCG TTACCCCCAAGAGCACAAGTCGCGTTTCCATAACAGCCTCACAACAGTCG AATGGAACAAAAAAGCCACCGAAAGGCACGCAGATCGTCGTTACCTTTAC GAAGCACGAAAGCGCCAAACGGCCCAAAACTTGTCGAGAGCCAGGCGCTG CCACCATTGAAGACACAGACACCAGTCTAGAAGGCAACTACAACGACATG TCGAAAAACAGACAGCCAGACGTTTGCGGTGAAGAGAGTTCGGGGGATAG AAAGGACTGTGGTGACCGGAGGGCCAAATCTCGGGCGATTGAAAACGAAA TGTCGGCATTGAACGAGAGCAAAAGCTCACGGCCAAAACGGAATCACGGG GCAGTGGCGTTTGACTGTGATCTGACGATCATGGACAGTCCGAAAGACGA CGAGGTGTCAGCGGATGGAGAGAACTCCGAGATAACACTAAACTCAATAA AGAAAACGTCCTGCAACAAACAACGCAAGCGTCTACGCC

Coding sequence (CDS) from alignment at xfSc0007753:424..1062-

>transcript:BL84617_cuf0 ID=transcript:BL84617_cuf0|Name=transcript:BL84617_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=636bp|location=Sequence derived from alignment at xfSc0007753:424..1062- (Branchiostoma lanceolatum)
GGCACCAATTTCATGTTACTGTTCTTTGTTGTCAGGTACAAGGAAAACCG
CCGTAAGTTGGTTGGATCACCGACGAGACACAAACGACCGCAGAGTCTGG
AAACAACGATGTCCAAGAACCTGGACAAGTCAGTGACTTCTTTGACCGTT
ACCCCCAAGAGCACAAGTCGCGTTTCCATAACAGCCTCACAACAGTCGAA
TGGAACAAAAAAGCCACCGAAAGGCACGCAGATCGTCGTTACCTTTACGA
AGCACGAAAGCGCCAAACGGCCCAAAACTTGTCGAGAGCCAGGCGCTGCC
ACCATTGAAGACACAGACACCAGTCTAGAAGGCAACTACAACGACATGTC
GAAAAACAGACAGCCAGACGTTTGCGGTGAAGAGAGTTCGGGGGATAGAA
AGGACTGTGGTGACCGGAGGGCCAAATCTCGGGCGATTGAAAACGAAATG
TCGGCATTGAACGAGAGCAAAAGCTCACGGCCAAAACGGAATCACGGGGC
AGTGGCGTTTGACTGTGATCTGACGATCATGGACAGTCCGAAAGACGACG
AGGTGTCAGCGGATGGAGAGAACTCCGAGATAACACTAAACTCAATAAAG
AAAACGTCCTGCAACAAACAACGCAAGCGTCTACGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84617gene:BL84617Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84617_cuf0-E1BL84617_cuf0-E1-1564476830-538322Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84617_cuf0transcript:BL84617_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0007753genomexfSc0007753:424..1062 -
Properties
Property NameValue
Transcript idBL84617_cuf0
Biotypeprotein_coding