transcript:BL84665_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84665_cuf0
Unique Nametranscript:BL84665_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84665_cuf0

>transcript:BL84665_cuf0-protein ID=transcript:BL84665_cuf0-protein|Name=transcript:BL84665_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=161bp
MGCIRCSAVMRQLQHHQTAEGNFVQHLQKGQQRVKSVHNELRHALDTCLA
NPCDPNAICKHNPPPALDATCTCNTGYEGDGLRTGSGCSDINGCLDNPCH
AKATCADNSAPALDATCTCNTGNAGDGLLSGTGCSELPKRCHDGYHMFRN
RCFKVRGPNAS
Run BLAST on NCBI

mRNA from alignment at Sc0000028:1914361..1917693+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84665_cuf0 ID=transcript:BL84665_cuf0|Name=transcript:BL84665_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3333bp|location=Sequence derived from alignment at Sc0000028:1914361..1917693+ (Branchiostoma lanceolatum)
ATGGGATGCATTCGCTGTTCCGCTGTCATGCGTCAGCTACAACATCATCA
GACTGCTGAAGGGAACTTTGTCCAACATTTGCAGAAAGGACAACAACGAG
TGAAAAGTGTCCACAACGAATTGAGACATGGTAAGGTTGTTACACATTGC
CTCTCTTGTAAACCTCATAAACGTACGGAAATATTACGTTGGAAATGTTA
ACGGGGGGTGCTCAAACATCGGACGTTTTTTTTACGCGCTGGAACTCACG
GCGCTCCATTGCTGGTTGCCAGAGAATGGTCATGTTTTAATTAATGAATT
TTGAACACATTCATCTAAAGACCATACTTGGACAAGAAATGTATTCATAC
TGTTCATGGGCCCTTCATGCTCCGCGTTACATGCGGAAGACGCTGTGAGA
CATTTTCACGAATGTACCTTCTGATTTAGTGCTACGCCAGATAGTGTGCC
TAACTTAGTACGCTTTGGTAATTTTGCTCTCTTCGGAAGTTGGTGATGAA
GTTAGGGAAATGTAAATAAGGCTTGAAGTCTGCTATATTATAGCTTTCTT
TTGGCCGGAAAATTTTGACTGTGTGCACTTCTCACGTCATGTGAGAAGGG
TTATATCTAGCGCATCCCAGCTCAGGTTTCCACGGGAAATAGGCTACTAC
GCGGCCCGACGTACGTATTGAATGCGGCCCGACTTACGAAATCATTACGA
AAAAACGACACCGCTTACATCAACAATACTCCGTCTACTTATTGGGAAAC
ATCTTCGCCATCTCTGTATTCAGTTTCCTTTTCATAGACGGTACCAATCA
CATGTTAGAGCGTAACAAAACTGTGCGTTGAATCGTTCCGCCACCATCGC
GGCCCCAAAAAATGGCGGGAAAACAACGTCGTCAGACGACAGCAATGTTT
ACGTTGTTTTTCTTTGGTCGGTTTTCTTCTCAACAAACACTTAAAGACCC
AAATTTTTAGTGTTTTATGAAGTTATTTTTCTTATGTGTATGATAGCTGT
GTGACTTATGTATCTGCTTGGCACAGGTCGTATATTTAGGTGCCGGGCCG
TCTAGCTACGCAGTGACCCTCTACTTAGCGCTACCATCATTATTGTCAAA
ATACTACTTTTCGACAAAACAAGAAATGAATATGTACACATATGTTTTGA
ATGTAAATGACAATTATGTGCATGAACTTGGGTTATTTACCTTCCTTATC
AGCATAGTCATTGGACACAAACACGGCGTACTTATGCAAAATAAGATCAG
TAAAAAATTCGTGCGATGTTAGAGCGCGTGCGATGTTAGAGCGCGTGCGA
TGTTAGAGCGCGTGCGATGTTAGAGCGCGTGCGATGTTAGAGCGCGTGCG
ATGTTAGGGCGCCCCCCGTTAATGTTATTTTGTGGGAATTTGGAAAACAT
CCTGTGAAGACGACTTTCTTATCGGACATCAATTTTTGCTAAAATGTACA
TTTTATGAATTCAACATGAAGAAAATCAAAATCAATTCTAGTCTACCAAG
CTAGAATGTATAGTTTCTGAACGATTCCAAACGACCTTGAATGTTGTCCT
TCGAAATTGCATTGTAATGCAATTATTCCACCCTGTCACCTGTAGCCTTG
GATACCTGCTTGGCTAATCCATGTGACCCGAACGCCATCTGCAAACATAA
CCCCCCACCTGCCCTGGATGCGACCTGTACCTGTAACACTGGGTATGAGG
GAGATGGTCTCCGTACCGGATCTGGATGTTCAGGTATCACATTTTGTTTT
TATTGACATTGTCTAGCATTAATTTATTGACAATTAAACACATTCTATGT
AATGACGGAAGGTTATGAAAGACAGAGCCGCCCGGTGCCCGACATCATGA
TGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACGAC
GACGATGATGACGACGACGACGACGACGATGATGATGATGACGATGATTA
TAACAATCATGATAACGATGATGATGTTGATGTTGATGATGTAACTCTTC
TTGGTATCATACTTTTGATCATCATTTCTTATTGTTCTAACTACAGACAT
CAATGCCTGCTTGGATAACCCTTGTCACGCCAAGGCCACCTGCGCAGATA
ACCCCCCTCCTGCCCTGGATGCGACCTGTACCTGTAACACCGGGTATGAG
GGAGATGGTCTCCGTACCGGATCTGGATGTTCAGGTATCACATTTTCAAT
GACATTGTTTAACATACATCAATTTATTGACAATTAAACACATTATATGC
AGTGATATAATATTATGAAAGACAGAGCTGTCCGGAGCCTGACATGATGA
TGATTATGATGATGATGAATGATGATGATGGTGACGATGATTATAACAAG
GATGATAACGATAAGGATGTTGGTGATGTAACTCTTCTTGGTATCATAAT
TTTGATTATCATTTCTCATTGTTCGAACTACAGACATCAATGGCTGCTTG
GATAACCCTTGTCACGCCAAGGCCACCTGCGCAGATAACTCTGCTCCTGC
CCTTGATGCGACCTGTACATGTAACACTGGGAATGCTGGAGATGGGCTTC
TCAGTGGAACTGGATGTTCAGGTATTACTTTCACACATGCACAATATTTA
TATATATTTTGAAGGTCTATTATTTTGTTTTCCTTATTCTCATATTGGTT
ATGGGATAATCGTTATCATGTGTTATCATGGATATCAATGTAACCCCTTG
TCACGTCAAGGCCACCTGCACTGATGATTCCACTCCTGTCTTAGATGTAA
GATATGAGACTTGTTTCTGTAAGATATGAGATTACGAAGATGTATGCAGT
GGCGCTGTACGTGTAGGCCTTACTTTTGTTCGGAATATCTTATGATTGAG
GTATCTTATGATTGAATGTCAGAGCAATGAAAAAAATATCCACCGTATCA
TAGTCTTCATTGCTGGTTTGTAACAAATCTAGATCTTTCTGGCCTCTGAC
ATCGCAGTTATATTGTTAAAGAGACTCTGGTAAATGAAAAAAAAAAGTTT
AATCATGTTCATCGTGGGTGGTATAGTTGTAGGTGTGTTTTTTGTAACAC
CTGCTTCATTTTTATGTATTGGCAGTGACTGTTATCGTCTGGCGAAGCAT
TGACAATCCATGTAGGTATAGGTATGAAGCAGCGCGAATTTGTTTCAGAG
GTAAAGTTATATAAATTATGATTAACACAGCAAAATTCTGTACCTGTGTT
TCAGAACTTCCCAAGAGGTGTCACGATGGTTATCACATGTTCAGAAACAG
ATGTTTCAAGGTTCGAGGTCCCAATGCGTCCTA

Coding sequence (CDS) from alignment at Sc0000028:1914361..1917693+

>transcript:BL84665_cuf0 ID=transcript:BL84665_cuf0|Name=transcript:BL84665_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1932bp|location=Sequence derived from alignment at Sc0000028:1914361..1917693+ (Branchiostoma lanceolatum)
ATGGGATGCATTCGCTGTTCCGCTGTCATGCGTCAGCTACAACATCATCA
GACTGCTGAAGGGAACTTTGTCCAACATTTGCAGAAAGGACAACAACGAG
TGAAAAGTGTCCACAACGAATTGAGACATGCCTTGGATACCTGCTTGGCT
AATCCATGTGACCCGAACGCCATCTGCAAACATAACCCCCCACCTGCCCT
GGATGCGACCTGTACCTGTAACACTGGGTATGAGGGAGATGGTCTCCGTA
CCGGATCTGGATGTTCAGACATCAATGGCTGCTTGGATAACCCTTGTCAC
GCCAAGGCCACCTGCGCAGATAACTCTGCTCCTGCCCTTGATGCGACCTG
TACATGTAACACTGGGAATGCTGGAGATGGGCTTCTCAGTGGAACTGGAT
GTTCAGAACTTCCCAAGAGGTGTCACGATGGTTATCACATGTTCAGAAAC
AGATGTTTCAAGGTTCGAGGTCCCAATGCGTCCATGGGATGCATTCGCTG
TTCCGCTGTCATGCGTCAGCTACAACATCATCAGACTGCTGAAGGGAACT
TTGTCCAACATTTGCAGAAAGGACAACAACGAGTGAAAAGTGTCCACAAC
GAATTGAGACATGCCTTGGATACCTGCTTGGCTAATCCATGTGACCCGAA
CGCCATCTGCAAACATAACCCCCCACCTGCCCTGGATGCGACCTGTACCT
GTAACACTGGGTATGAGGGAGATGGTCTCCGTACCGGATCTGGATGTTCA
GACATCAATGGCTGCTTGGATAACCCTTGTCACGCCAAGGCCACCTGCGC
AGATAACTCTGCTCCTGCCCTTGATGCGACCTGTACATGTAACACTGGGA
ATGCTGGAGATGGGCTTCTCAGTGGAACTGGATGTTCAGAACTTCCCAAG
AGGTGTCACGATGGTTATCACATGTTCAGAAACAGATGTTTCAAGGTTCG
AGGTCCCAATGCGTCCATGGGATGCATTCGCTGTTCCGCTGTCATGCGTC
AGCTACAACATCATCAGACTGCTGAAGGGAACTTTGTCCAACATTTGCAG
AAAGGACAACAACGAGTGAAAAGTGTCCACAACGAATTGAGACATGCCTT
GGATACCTGCTTGGCTAATCCATGTGACCCGAACGCCATCTGCAAACATA
ACCCCCCACCTGCCCTGGATGCGACCTGTACCTGTAACACTGGGTATGAG
GGAGATGGTCTCCGTACCGGATCTGGATGTTCAGACATCAATGGCTGCTT
GGATAACCCTTGTCACGCCAAGGCCACCTGCGCAGATAACTCTGCTCCTG
CCCTTGATGCGACCTGTACATGTAACACTGGGAATGCTGGAGATGGGCTT
CTCAGTGGAACTGGATGTTCAGAACTTCCCAAGAGGTGTCACGATGGTTA
TCACATGTTCAGAAACAGATGTTTCAAGGTTCGAGGTCCCAATGCGTCCA
TGGGATGCATTCGCTGTTCCGCTGTCATGCGTCAGCTACAACATCATCAG
ACTGCTGAAGGGAACTTTGTCCAACATTTGCAGAAAGGACAACAACGAGT
GAAAAGTGTCCACAACGAATTGAGACATGCCTTGGATACCTGCTTGGCTA
ATCCATGTGACCCGAACGCCATCTGCAAACATAACCCCCCACCTGCCCTG
GATGCGACCTGTACCTGTAACACTGGGTATGAGGGAGATGGTCTCCGTAC
CGGATCTGGATGTTCAGACATCAATGGCTGCTTGGATAACCCTTGTCACG
CCAAGGCCACCTGCGCAGATAACTCTGCTCCTGCCCTTGATGCGACCTGT
ACATGTAACACTGGGAATGCTGGAGATGGGCTTCTCAGTGGAACTGGATG
TTCAGAACTTCCCAAGAGGTGTCACGATGGTTATCACATGTTCAGAAACA
GATGTTTCAAGGTTCGAGGTCCCAATGCGTCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84665gene:BL84665Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84665_cuf0transcript:BL84665_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84665_cuf0-E1BL84665_cuf0-E1-1564476830-170969Branchiostoma lanceolatumexon
BL84665_cuf0-E2BL84665_cuf0-E2-1564476830-170971Branchiostoma lanceolatumexon
BL84665_cuf0-E3BL84665_cuf0-E3-1564476830-170973Branchiostoma lanceolatumexon
BL84665_cuf0-E4BL84665_cuf0-E4-1564476830-170976Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000028genomeSc0000028:1914361..1917693 +
Properties
Property NameValue
Transcript idBL84665_cuf0
Biotypeprotein_coding