transcript:BL84711_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84711_cuf0
Unique Nametranscript:BL84711_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84711_cuf0

>transcript:BL84711_cuf0-protein ID=transcript:BL84711_cuf0-protein|Name=transcript:BL84711_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=117bp
CKEEEETVVHLFWNCHKTAHFWRQVDDWFFEITDIHLHINALSIIFGISS
DRCPVLSNVIILLGKIFVFKHRNYSLNLPAFISFVSFYYRLELNIANRQG
KVHKHRGKWGKFNTVFS
Run BLAST on NCBI

mRNA from alignment at Sc0000029:139293..139817+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84711_cuf0 ID=transcript:BL84711_cuf0|Name=transcript:BL84711_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=525bp|location=Sequence derived from alignment at Sc0000029:139293..139817+ (Branchiostoma lanceolatum)
TCTGTAAAGAGGAAGAAGAAACAGTTGTCCACCTATTTTGGAACTGTCAT
AAAACTGCACATTTTTGGAGACAGGTGGACGACTGGTTCTTCGAAATCAC
TGATATTCATTTGCATATTAATGCACTTAGTATAATTTTCGGTATCTCAA
GTGATCGTTGCCCGGTTCTGTCGAATGTTATTATTCTGCTTGGTAAGATA
TTTGTCTTTAAACATCGCAATTATTCATTGAATTTACCAGCCTTTATATC
CTTTGTTTCCTTCTATTATAGATTAGAATTGAATATTGCAAACAGACAAG
GAAAAGTACATAAACATAGGGGGAAGTGGGGAAAATTCAATACAGTTTTT
TCTTGACAAATGATGGAAATTTAATTGTTCGTTGTGAATAAATATTATAT
ATTATTATTTGTATGCATCTATATCATTATATGTAGGCATCTATTATTAT
ATGTATATTATTATATGTATGCATCTATATTATTATATGTATGCAAATAT
TATTATATGTATGCATCTTTGTGAG

Coding sequence (CDS) from alignment at Sc0000029:139293..139817+

>transcript:BL84711_cuf0 ID=transcript:BL84711_cuf0|Name=transcript:BL84711_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=354bp|location=Sequence derived from alignment at Sc0000029:139293..139817+ (Branchiostoma lanceolatum)
TGTAAAGAGGAAGAAGAAACAGTTGTCCACCTATTTTGGAACTGTCATAA
AACTGCACATTTTTGGAGACAGGTGGACGACTGGTTCTTCGAAATCACTG
ATATTCATTTGCATATTAATGCACTTAGTATAATTTTCGGTATCTCAAGT
GATCGTTGCCCGGTTCTGTCGAATGTTATTATTCTGCTTGGTAAGATATT
TGTCTTTAAACATCGCAATTATTCATTGAATTTACCAGCCTTTATATCCT
TTGTTTCCTTCTATTATAGATTAGAATTGAATATTGCAAACAGACAAGGA
AAAGTACATAAACATAGGGGGAAGTGGGGAAAATTCAATACAGTTTTTTC
TTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84711gene:BL84711Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84711_cuf0-E1BL84711_cuf0-E1-1564476830-171936Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84711_cuf0transcript:BL84711_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000029genomeSc0000029:139293..139817 +
Properties
Property NameValue
Transcript idBL84711_cuf0
Biotypeprotein_coding