transcript:BL84765_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84765_cuf0
Unique Nametranscript:BL84765_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84765_cuf0

>transcript:BL84765_cuf0-protein ID=transcript:BL84765_cuf0-protein|Name=transcript:BL84765_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
MTELLPHIRLPPYLNQSRLEVPVHRLFLGGSGTGSAWHLHAQAWNGVVFG
AKRWFIYAPDQRPPGIANFDQLDWMKYVHPYLRASWRPLECLQQAGDVVY
IPQNFFHAVLNIGDTVAMSFX
Run BLAST on NCBI

mRNA from alignment at Sc0000061:1118365..1118907-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84765_cuf0 ID=transcript:BL84765_cuf0|Name=transcript:BL84765_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=543bp|location=Sequence derived from alignment at Sc0000061:1118365..1118907- (Branchiostoma lanceolatum)
ACCTGAGTGTCCCGTTATGGCGACAGACAGGTCCTGACGGGTTACCCGCT
GGACATCATCGTTAATAACGGGCAAGGGGACGACAGCGAGAGGCTAAGTG
CGTATCTAACGCATTATCTGGACGATACATCATGTAAATTTGAATTCGAC
AGCAAGTACGTAACGGACCGTGGGGCAATTATGACGGAACTCTTGCCCCA
CATCCGCCTGCCGCCGTACCTGAACCAGTCGCGCTTAGAGGTACCCGTCC
ACCGCCTGTTCCTGGGCGGATCCGGCACGGGATCGGCCTGGCACCTGCAC
GCACAGGCCTGGAACGGCGTGGTGTTCGGCGCCAAACGCTGGTTCATCTA
CGCCCCGGACCAGCGTCCTCCTGGCATCGCCAATTTCGATCAGCTGGACT
GGATGAAATATGTTCATCCGTACTTACGCGCCTCCTGGCGTCCTCTGGAG
TGCCTGCAGCAGGCAGGCGATGTGGTTTACATCCCGCAGAATTTCTTCCA
CGCCGTGCTGAATATCGGTGACACCGTGGCCATGTCCTTCGNN

Coding sequence (CDS) from alignment at Sc0000061:1118365..1118907-

>transcript:BL84765_cuf0 ID=transcript:BL84765_cuf0|Name=transcript:BL84765_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=363bp|location=Sequence derived from alignment at Sc0000061:1118365..1118907- (Branchiostoma lanceolatum)
ATGACGGAACTCTTGCCCCACATCCGCCTGCCGCCGTACCTGAACCAGTC
GCGCTTAGAGGTACCCGTCCACCGCCTGTTCCTGGGCGGATCCGGCACGG
GATCGGCCTGGCACCTGCACGCACAGGCCTGGAACGGCGTGGTGTTCGGC
GCCAAACGCTGGTTCATCTACGCCCCGGACCAGCGTCCTCCTGGCATCGC
CAATTTCGATCAGCTGGACTGGATGAAATATGTTCATCCGTACTTACGCG
CCTCCTGGCGTCCTCTGGAGTGCCTGCAGCAGGCAGGCGATGTGGTTTAC
ATCCCGCAGAATTTCTTCCACGCCGTGCTGAATATCGGTGACACCGTGGC
CATGTCCTTCGNN
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84765gene:BL84765Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84765_cuf0-E1BL84765_cuf0-E1-1564476830-247811Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84765_cuf0transcript:BL84765_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000061genomeSc0000061:1118365..1118907 -
Properties
Property NameValue
Transcript idBL84765_cuf0
Biotypeprotein_coding