transcript:BL84887_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84887_cuf0
Unique Nametranscript:BL84887_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84887_cuf0

>transcript:BL84887_cuf0-protein ID=transcript:BL84887_cuf0-protein|Name=transcript:BL84887_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=266bp
KDTDTPVTHNLADFNGPFNARFVKIHPVTWNDHICMRADMIVEDEMKKQV
KEAVKQEKMMTAVAETVTETSVMASSSITVSVTTSTELDVRYTVTQAKFG
VVETKDEAGAWCAATNDDKQFLLLDLEQEKLVTGVVTQGRNSSPDWPDGP
TSHWVTSYTLSYGLENADENEYKDAKGKLQIFTGNTDTDTPVTNSFDQFN
GTFKARFVKIHPVTWNDHICMRADMIVEDEVKKEVKEVAKREEKKAVIAE
SISETCVMASSTTIVS
Run BLAST on NCBI

mRNA from alignment at Sc0000058:253412..255518+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84887_cuf0 ID=transcript:BL84887_cuf0|Name=transcript:BL84887_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2107bp|location=Sequence derived from alignment at Sc0000058:253412..255518+ (Branchiostoma lanceolatum)
ATAAAGACACAGACACTCCTGTTACCCACAACCTGGCAGACTTCAATGGG
CCGTTCAATGCGCGCTTTGTGAAGATACATCCGGTTACATGGAACGACCA
CATCTGCATGCGGGCGGACATGATCGTTGAGGACGGTAAGGCAAATTGTT
CGCTTCATTGCTACAAGAGAAGACGTACCAGTCTCCTACTGAACGTTTTG
ATGATAGAACGTTTATTAGAAAGTTGTGGCATCGTGTGGCGCAATCGGTA
GGGTGTTTCGCCCAGAACCGAGAGGTCCCGGGTTCGAGACCCCGATATGC
CCCGATGTTGTGCCCTCGGGAAAGGCACTTTACACGACTTTCCTCACTCC
ACCCAGATGTGAATGTGTACCTGACTTCGGTTGGGGAAGGTCATATTGAG
ATCACCTGCTGGCGCCGAATGACAGCCTCCCAGACCCCAGTTCCACAAAG
TGCAAGTGTAGAGCAAATATGTATCTGTTCTGTATTATATGATTGTAAAC
CCTGCAGCAATTCAGCACTGGCTGTCATTGCACAAAATTTGGTAAAGTTG
GGGCAGGTCGTGGTGACTTCTTTAAACACTTCGGTTCTTTCGTCGTAAAT
GCTCAAATGAATAATTGAAATAAAATGTGTTGCGTCTAGGAGCGTTTATA
GTCCAAAAGCTAGCTAAAACAACTTTAAAGATTTTTTTTCAGAGTTATTG
TCATGTATGAAGTGATGTACTCTCTTTCCTTCTGTAGAAATGAAGAAACA
AGTGAAAGAAGCTGTGAAACAGGAGAAAATGATGACAGCTGTCGCCGAGA
CCGTGACAGAAACTTCCGTGATGGCCAGCAGCAGTATCACGGTCTCCGTA
ACGACATCTACAGAGCTGGACGTGCGCTACACCGTCACCCAGGCCAAGTT
CGGCGTCGTGGAGACCAAAGACGAAGCCGGAGCCTGGTGTGCGGCTACAA
ACGACGATAAGCAGTTCCTGCTCTTGGATCTTGAACAGGAAAAACTCGTC
ACCGGGGTCGTGACACAAGGCAGAAACTCCAGTCCTGACTGGCCGGACGG
ACCAACTAGCCACTGGGTGACGTCATACACACTGTCGTATGGACTGGAAA
ACGCTGACGAAAACGAGTACAAGGACGCTAAAGGAAAACTTCAAGTAAAT
AGAAATGACATCATCATTCATTCATTCAGTCAGTCAGTCAGTCTCTGCTA
TTTATTTTTGTCTAAAATATACACAATATTGTTGCGGGAAAGCATAGAAT
TTCAAAAGTATGGCACATGATAATCATAAAAAATGTTATTTCACAGATCT
TCACCGGAAACACCGATACGGACACGCCAGTGACGAACAGTTTTGACCAG
TTCAACGGGACTTTCAAAGCTCGCTTCGTCAAGATTCACCCTGTAACTTG
GAATGACCACATCTGCATGAGGGCAGACATGATTGTTGAAGATGGTAAGA
CAAAAGTACACATTTGGAGGTGGAAGTCCTGATTTCGTTCCTCAAAGACA
AAAGTGTGTCTAAATTAGTGCTGCGTACCTAAACGTACCATTAGGTACAG
GTACATGTACCAGTACAGAGGTTTAGGTACAGATCCGGACCTGTACCTGA
ACAATTTGACAAATTAACATTTGTTTTTCTGAACTTCTTCCATAATGACA
GAAACATAAATAAGCTGTTTTCAACTTGTCAGTGTCTTTATTCAAATAAC
TAGGTTTCCTACAGCCAAACTCCCTTGGCCTTGCTATCAAAACTCCAGGC
CTGCCTGAATGATCGGTTGCATGTTAGTTACGCTGTACCAAGGTGTCACT
TTGGTCACGTTTGGTGTTGCATGAGGCCATGAGGTCAGGAGATCAGTGAC
AAAATAAGCACATACTTGGTGTTAATCTATAACAGTACAGTACCGGTACT
TCATGATCCGGTATTTTGGACCTGTACCTAATCATTATTTACGGTACAGT
ACCGGTACATAAACCATATCTTTACCTTTTATCTCTCTTCTAACAGAGGT
GAAGAAGGAAGTGAAGGAAGTTGCCAAGAGAGAAGAAAAGAAGGCCGTCA
TTGCAGAATCAATTTCTGAAACGTGTGTGATGGCAAGTAGTACCACCATT
GTCTCTT

Coding sequence (CDS) from alignment at Sc0000058:253412..255518+

>transcript:BL84887_cuf0 ID=transcript:BL84887_cuf0|Name=transcript:BL84887_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3192bp|location=Sequence derived from alignment at Sc0000058:253412..255518+ (Branchiostoma lanceolatum)
AAAGACACAGACACTCCTGTTACCCACAACCTGGCAGACTTCAATGGGCC
GTTCAATGCGCGCTTTGTGAAGATACATCCGGTTACATGGAACGACCACA
TCTGCATGCGGGCGGACATGATCGTTGAGGACGAAATGAAGAAACAAGTG
AAAGAAGCTGTGAAACAGGAGAAAATGATGACAGCTGTCGCCGAGACCGT
GACAGAAACTTCCGTGATGGCCAGCAGCAGTATCACGGTCTCCGTAACGA
CATCTACAGAGCTGGACGTGCGCTACACCGTCACCCAGGCCAAGTTCGGC
GTCGTGGAGACCAAAGACGAAGCCGGAGCCTGGTGTGCGGCTACAAACGA
CGATAAGCAGTTCCTGCTCTTGGATCTTGAACAGGAAAAACTCGTCACCG
GGGTCGTGACACAAGGCAGAAACTCCAGTCCTGACTGGCCGGACGGACCA
ACTAGCCACTGGGTGACGTCATACACACTGTCGTATGGACTGGAAAACGC
TGACGAAAACGAGTACAAGGACGCTAAAGGAAAACTTCAAATCTTCACCG
GAAACACCGATACGGACACGCCAGTGACGAACAGTTTTGACCAGTTCAAC
GGGACTTTCAAAGCTCGCTTCGTCAAGATTCACCCTGTAACTTGGAATGA
CCACATCTGCATGAGGGCAGACATGATTGTTGAAGATGAGGTGAAGAAGG
AAGTGAAGGAAGTTGCCAAGAGAGAAGAAAAGAAGGCCGTCATTGCAGAA
TCAATTTCTGAAACGTGTGTGATGGCAAGTAGTACCACCATTGTCTCTAA
AGACACAGACACTCCTGTTACCCACAACCTGGCAGACTTCAATGGGCCGT
TCAATGCGCGCTTTGTGAAGATACATCCGGTTACATGGAACGACCACATC
TGCATGCGGGCGGACATGATCGTTGAGGACGAAATGAAGAAACAAGTGAA
AGAAGCTGTGAAACAGGAGAAAATGATGACAGCTGTCGCCGAGACCGTGA
CAGAAACTTCCGTGATGGCCAGCAGCAGTATCACGGTCTCCGTAACGACA
TCTACAGAGCTGGACGTGCGCTACACCGTCACCCAGGCCAAGTTCGGCGT
CGTGGAGACCAAAGACGAAGCCGGAGCCTGGTGTGCGGCTACAAACGACG
ATAAGCAGTTCCTGCTCTTGGATCTTGAACAGGAAAAACTCGTCACCGGG
GTCGTGACACAAGGCAGAAACTCCAGTCCTGACTGGCCGGACGGACCAAC
TAGCCACTGGGTGACGTCATACACACTGTCGTATGGACTGGAAAACGCTG
ACGAAAACGAGTACAAGGACGCTAAAGGAAAACTTCAAATCTTCACCGGA
AACACCGATACGGACACGCCAGTGACGAACAGTTTTGACCAGTTCAACGG
GACTTTCAAAGCTCGCTTCGTCAAGATTCACCCTGTAACTTGGAATGACC
ACATCTGCATGAGGGCAGACATGATTGTTGAAGATGAGGTGAAGAAGGAA
GTGAAGGAAGTTGCCAAGAGAGAAGAAAAGAAGGCCGTCATTGCAGAATC
AATTTCTGAAACGTGTGTGATGGCAAGTAGTACCACCATTGTCTCTAAAG
ACACAGACACTCCTGTTACCCACAACCTGGCAGACTTCAATGGGCCGTTC
AATGCGCGCTTTGTGAAGATACATCCGGTTACATGGAACGACCACATCTG
CATGCGGGCGGACATGATCGTTGAGGACGAAATGAAGAAACAAGTGAAAG
AAGCTGTGAAACAGGAGAAAATGATGACAGCTGTCGCCGAGACCGTGACA
GAAACTTCCGTGATGGCCAGCAGCAGTATCACGGTCTCCGTAACGACATC
TACAGAGCTGGACGTGCGCTACACCGTCACCCAGGCCAAGTTCGGCGTCG
TGGAGACCAAAGACGAAGCCGGAGCCTGGTGTGCGGCTACAAACGACGAT
AAGCAGTTCCTGCTCTTGGATCTTGAACAGGAAAAACTCGTCACCGGGGT
CGTGACACAAGGCAGAAACTCCAGTCCTGACTGGCCGGACGGACCAACTA
GCCACTGGGTGACGTCATACACACTGTCGTATGGACTGGAAAACGCTGAC
GAAAACGAGTACAAGGACGCTAAAGGAAAACTTCAAATCTTCACCGGAAA
CACCGATACGGACACGCCAGTGACGAACAGTTTTGACCAGTTCAACGGGA
CTTTCAAAGCTCGCTTCGTCAAGATTCACCCTGTAACTTGGAATGACCAC
ATCTGCATGAGGGCAGACATGATTGTTGAAGATGAGGTGAAGAAGGAAGT
GAAGGAAGTTGCCAAGAGAGAAGAAAAGAAGGCCGTCATTGCAGAATCAA
TTTCTGAAACGTGTGTGATGGCAAGTAGTACCACCATTGTCTCTAAAGAC
ACAGACACTCCTGTTACCCACAACCTGGCAGACTTCAATGGGCCGTTCAA
TGCGCGCTTTGTGAAGATACATCCGGTTACATGGAACGACCACATCTGCA
TGCGGGCGGACATGATCGTTGAGGACGAAATGAAGAAACAAGTGAAAGAA
GCTGTGAAACAGGAGAAAATGATGACAGCTGTCGCCGAGACCGTGACAGA
AACTTCCGTGATGGCCAGCAGCAGTATCACGGTCTCCGTAACGACATCTA
CAGAGCTGGACGTGCGCTACACCGTCACCCAGGCCAAGTTCGGCGTCGTG
GAGACCAAAGACGAAGCCGGAGCCTGGTGTGCGGCTACAAACGACGATAA
GCAGTTCCTGCTCTTGGATCTTGAACAGGAAAAACTCGTCACCGGGGTCG
TGACACAAGGCAGAAACTCCAGTCCTGACTGGCCGGACGGACCAACTAGC
CACTGGGTGACGTCATACACACTGTCGTATGGACTGGAAAACGCTGACGA
AAACGAGTACAAGGACGCTAAAGGAAAACTTCAAATCTTCACCGGAAACA
CCGATACGGACACGCCAGTGACGAACAGTTTTGACCAGTTCAACGGGACT
TTCAAAGCTCGCTTCGTCAAGATTCACCCTGTAACTTGGAATGACCACAT
CTGCATGAGGGCAGACATGATTGTTGAAGATGAGGTGAAGAAGGAAGTGA
AGGAAGTTGCCAAGAGAGAAGAAAAGAAGGCCGTCATTGCAGAATCAATT
TCTGAAACGTGTGTGATGGCAAGTAGTACCACCATTGTCTCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84887gene:BL84887Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84887_cuf0transcript:BL84887_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84887_cuf0-E1BL84887_cuf0-E1-1564476830-241236Branchiostoma lanceolatumexon
BL84887_cuf0-E2BL84887_cuf0-E2-1564476830-241238Branchiostoma lanceolatumexon
BL84887_cuf0-E3BL84887_cuf0-E3-1564476830-241240Branchiostoma lanceolatumexon
BL84887_cuf0-E4BL84887_cuf0-E4-1564476830-241243Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000058genomeSc0000058:253412..255518 +
Properties
Property NameValue
Transcript idBL84887_cuf0
Biotypeprotein_coding