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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85027_cuf0 >transcript:BL85027_cuf0-protein ID=transcript:BL85027_cuf0-protein|Name=transcript:BL85027_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=229bp
MKEVVFFTWIDEREPPRSRTLVVLLALLALGGTGVQSAPLEKNPRAVGKC
PPYTHWDSSNSRCVDCTGEQFKCHAGWELREDCGYSPEGYHVADTCRQCP
NGTYSEGTYLTGAGQNHGQCQDCKTCPSGYERECNPKQPAVCLCDDNQEL
APDGTTCQKICCLCRYDPSKEDVIDECLYRYPRTQYHCKKDSLSAGETCA
RPPQPKTTPAPPSVSTAAPTPPTNGTTPK Run BLAST on NCBI mRNA from alignment at Sc0000018:2507936..2511347- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85027_cuf0 ID=transcript:BL85027_cuf0|Name=transcript:BL85027_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3412bp|location=Sequence derived from alignment at Sc0000018:2507936..2511347- (Branchiostoma lanceolatum)
GAAAGAAACAAGATGGCGCTGGTTTCTGACGACTGAAAAATTATTTATGT
TTTTGGTCGCGAAACGTAGTTTTTTCAAGGATAGTTCAGCAAATTTGCTC
CCATTGAGTTATAGAAATATTCTTCAAGAAGCACATGTGACAGATAGGGA
GCGTGATGCAAGGTAGAGTTCGTTTAATCTTAGAACATGACTCACGTATA
CCGACGCGGATTTCTAACTTGCAGACTTGGCCTTGCTACTTCCAACTTGC
CAAGGACTTAACCAACTTCTAGTACTAGTTCTACGCAAGGACATCCACAC
CAACAAATTCTACGCGATACTGATGGGGCTGTAGGACAATCATGAAGGAG
GTAGTGTTCTTTACTTGGATCGACGAACGCGAACCGCCTCGAAGCCGTAC
ACTTGTTGTCTTGCTGGCACTGTTGGCCCTTGGTGGAACTGGGGTCCAAT
CGGCACCCCTAGAAAAGGTAACGTTATGTATGTTGTTTCGATATGTCAAG
TTCTCTCTTCTGTACTATCTCTACTGTAGATTTCGTACCACAAATTCTAG
CCCTATCTGATTAACAGGGAGTTGTGATGGCCTTATTAGTCCACGACCTC
ATACCTTCGCCAAATGATTTTTAACCTTTATGACGGACGTATTTAGGAGT
GGTTCTCATCAATTATGAATCACACTAGTTGATCGTCTTCTCCACCCAAA
TAACAGAAGTTGTCCAAAGTATTAGCTTAACAAAGAAGGTTATGCTAACA
TTTTTCATCAATTATGAAAATGAGGTCCTTATAAGCATAATTTGATTCAA
CTATGTTCACATTCACATAACTTCCAAATGCCACAAGTGCACTGTATGAA
ATTGCCTTCATAACGATACCACATAGATTTCATAATGTTGAATGCAACTT
TTTTTGCCAAACCCTTTCTTTTATTCTCATGCATGCTTGTATCAGTTTTG
GCATTCTCAATAGGATTTCGCACTTACACAATTAAATCAAATCAACATGC
TTTTTCCTAACCGTTACTGAAGTTAGTATGCAAATTACATGTATGTTAAC
ATGAGACATAACAGGTTACATGAGATAGGTGAAATACATGATAGCGCTCG
TCTTAAATGGCATGCTAAAAGTCCTTGTAATTACGTACATCCTAATTTTT
TCCATTTCTCATAGAACCCAAGAGCTGTCGGTAAATGTCCACCCTACACC
CACTGGGATTCTTCAAATAGCAGATGTGTTGACTGCACTGGCGAACAATT
TAAGTGCCATGCAGGTGAGTTTGAAGTTTGTTGTTGATGTGTGGACTTGC
TTCCTTATTCCCAATGGAAATCGAATACCAAGGTTGATTATACATAGCAG
TTTATAATGGTCATAATGTTACCACATGCAGTACCTTTTTCAGTAGATTG
CACTGTAGTCATATAATGTAGTTGCATAATGACAGATTGATTAATCTGTA
CATGTACATTAAAGGCCCCCAAAAGAAAATCAGTTACACAAACGCAGCAA
AATTTATTTTCAACATCGGACCTTGATTTCCCATTCTTGTGAGGGTTCTT
TTTTTCAAGTGTGAAGTATGAGTTTCAATCGGATGGTCCATTATTGACCC
ATTAAGCAAGTGGAAAATACAGTTAAGTTACTTAGGCTATAAATTGACAA
GTATCCAGACACACGTTGCAAAGGTGATTTTTAAGCTTAACAAAACGTTT
CTTTAGAGCCACCAAGTTAAAGTTTGTCCAATGGTTGTTCACGATATAAC
ATGTTCAGGGCTCGAAATTCATTTTTGGAAATAGTGGTGCACTATTGCAC
CCAACAAAGAGAATTAGGTGCACAGAAAGAAATTTGGGTGCACCACCTAA
AATAAAGTTGAATGTCAGCAAAACATAATTACATTTTTATGCTCTTATAA
TTGTAATCAAGAACTTCACAATCTGTAATCAAATTTCAAACAAGACGTAA
TACATCAAATAAAGTGCAACAAAGGGTTCTATTGTTTTTTCTGATACTGT
TTACTAGACAGTGTACTATGATATCTTTACTCTATAGCCTACAAAAATAT
CTAGGTGCACCAGTGCACCTATAGTCAAAAATTAGGTGCACAGCTACCAG
CACCCAGTATTTCGAGCCCTGCATGTTACACCTGGCTGTAATTAATCTGA
AGGGTACTCGGGGGTTATCAGAATATTGATGCTTTATAATGCAACTACTG
CCTAGTCCAGGTTCAAGGTCAATTTGCCAATACAATTTACGTTCTTGTAT
TCAGAAATGTATCATTAGCCGAACCAGAATACTCTCCTCTGGGGTTGTGT
ATGGCTTTACGTTTCTGTGTGTATTATGGCCATGCATGTACATGAAAAGT
TTTCAAAATAGTCACATGATCACAAAAGCAACGTCATTGACCCCTTCTGA
GAAATGGTGATTGTTGCTGAGTCATTCTCTCAACAGATTGTAGAAAGTGG
GGGAATTCTTTATTTCCCCCACACATCTTGATCTTATAAGATATCAAAGT
GGAATTTCGTTATCAGTGATAGATATAAGTTGATAAGAAAACATATTTGT
GTTATCACACTCTAGCTTTTAAGGTAACACTTTTACTAAAACTAGGTTTA
AAACCCAAAGCAACAACTTATTATAGCTTAGGAATGCAAAATGAAGATTT
ACCAATCACTATAAATTATGGAAAATAGCACTCTTGTATAGGAAGGTGTC
CAATAGACTGAAGCAAGCAAATTGTGTATTCCAGTAGACTAGTATCAGAT
AGCACAAAAGTGACATCTGGCTGAATAGGTCAGAAGTGCAGGTCTTTCAA
CACGAAATGAAATATTAGTCACCATGATTGATGAAGCTAAGTTATCCATG
AATATCTTCTTGGTAGTCCATTGCTAAAGATGACTGTAAAGGTGGTCATG
GATATTATGCATGTGTTAATCTCAAATTCAAAACATCTTTTTTCACCCAG
GTTGGGAACTGAGGGAAGACTGTGGGTATAGCCCAGAAGGATACCATGTC
GCAGACACTTGCAGGCAGTGCCCCAATGGGACATACTCGGAAGGCACATA
CTTGACAGGTGCAGGTCAAAACCATGGACAGTGTCAGGACTGTAAGACCT
GTCCGAGCGGTTACGAACGGGAATGCAACCCCAAACAGCCGGCAGTGTGT
CTCTGTGATGATAATCAAGAACTAGCACCCGATGGGACTACCTGTCAGAA
GATATGCTGCTTGTGTCGGTATGATCCAAGCAAAGAGGATGTGATAGATG
AGTGTCTCTATCGGTATCCCAGAACTCAGTATCATTGTAAGAAGGACAGT
TTGAGTGCAGGGGAGACATGTGCAAGACCCCCTCAACCCAAAACCACCCC
AGCGCCACCCTCTGTGTCGACTGCTGCCCCAACACCACCAACTAATGGTA
CCACTCCTAAAA Coding sequence (CDS) from alignment at Sc0000018:2507936..2511347- >transcript:BL85027_cuf0 ID=transcript:BL85027_cuf0|Name=transcript:BL85027_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2061bp|location=Sequence derived from alignment at Sc0000018:2507936..2511347- (Branchiostoma lanceolatum)
ATGAAGGAGGTAGTGTTCTTTACTTGGATCGACGAACGCGAACCGCCTCG
AAGCCGTACACTTGTTGTCTTGCTGGCACTGTTGGCCCTTGGTGGAACTG
GGGTCCAATCGGCACCCCTAGAAAAGAACCCAAGAGCTGTCGGTAAATGT
CCACCCTACACCCACTGGGATTCTTCAAATAGCAGATGTGTTGACTGCAC
TGGCGAACAATTTAAGTGCCATGCAGGTTGGGAACTGAGGGAAGACTGTG
GGTATAGCCCAGAAGGATACCATGTCGCAGACACTTGCAGGCAGTGCCCC
AATGGGACATACTCGGAAGGCACATACTTGACAGGTGCAGGTCAAAACCA
TGGACAGTGTCAGGACTGTAAGACCTGTCCGAGCGGTTACGAACGGGAAT
GCAACCCCAAACAGCCGGCAGTGTGTCTCTGTGATGATAATCAAGAACTA
GCACCCGATGGGACTACCTGTCAGAAGATATGCTGCTTGTGTCGGTATGA
TCCAAGCAAAGAGGATGTGATAGATGAGTGTCTCTATCGGTATCCCAGAA
CTCAGTATCATTGTAAGAAGGACAGTTTGAGTGCAGGGGAGACATGTGCA
AGACCCCCTCAACCCAAAACCACCCCAGCGCCACCCTCTGTGTCGACTGC
TGCCCCAACACCACCAACTAATGGTACCACTCCTAAAATGAAGGAGGTAG
TGTTCTTTACTTGGATCGACGAACGCGAACCGCCTCGAAGCCGTACACTT
GTTGTCTTGCTGGCACTGTTGGCCCTTGGTGGAACTGGGGTCCAATCGGC
ACCCCTAGAAAAGAACCCAAGAGCTGTCGGTAAATGTCCACCCTACACCC
ACTGGGATTCTTCAAATAGCAGATGTGTTGACTGCACTGGCGAACAATTT
AAGTGCCATGCAGGTTGGGAACTGAGGGAAGACTGTGGGTATAGCCCAGA
AGGATACCATGTCGCAGACACTTGCAGGCAGTGCCCCAATGGGACATACT
CGGAAGGCACATACTTGACAGGTGCAGGTCAAAACCATGGACAGTGTCAG
GACTGTAAGACCTGTCCGAGCGGTTACGAACGGGAATGCAACCCCAAACA
GCCGGCAGTGTGTCTCTGTGATGATAATCAAGAACTAGCACCCGATGGGA
CTACCTGTCAGAAGATATGCTGCTTGTGTCGGTATGATCCAAGCAAAGAG
GATGTGATAGATGAGTGTCTCTATCGGTATCCCAGAACTCAGTATCATTG
TAAGAAGGACAGTTTGAGTGCAGGGGAGACATGTGCAAGACCCCCTCAAC
CCAAAACCACCCCAGCGCCACCCTCTGTGTCGACTGCTGCCCCAACACCA
CCAACTAATGGTACCACTCCTAAAATGAAGGAGGTAGTGTTCTTTACTTG
GATCGACGAACGCGAACCGCCTCGAAGCCGTACACTTGTTGTCTTGCTGG
CACTGTTGGCCCTTGGTGGAACTGGGGTCCAATCGGCACCCCTAGAAAAG
AACCCAAGAGCTGTCGGTAAATGTCCACCCTACACCCACTGGGATTCTTC
AAATAGCAGATGTGTTGACTGCACTGGCGAACAATTTAAGTGCCATGCAG
GTTGGGAACTGAGGGAAGACTGTGGGTATAGCCCAGAAGGATACCATGTC
GCAGACACTTGCAGGCAGTGCCCCAATGGGACATACTCGGAAGGCACATA
CTTGACAGGTGCAGGTCAAAACCATGGACAGTGTCAGGACTGTAAGACCT
GTCCGAGCGGTTACGAACGGGAATGCAACCCCAAACAGCCGGCAGTGTGT
CTCTGTGATGATAATCAAGAACTAGCACCCGATGGGACTACCTGTCAGAA
GATATGCTGCTTGTGTCGGTATGATCCAAGCAAAGAGGATGTGATAGATG
AGTGTCTCTATCGGTATCCCAGAACTCAGTATCATTGTAAGAAGGACAGT
TTGAGTGCAGGGGAGACATGTGCAAGACCCCCTCAACCCAAAACCACCCC
AGCGCCACCCTCTGTGTCGACTGCTGCCCCAACACCACCAACTAATGGTA
CCACTCCTAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000018 | genome | Sc0000018:2507936..2511347 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85027_cuf0 |
| Biotype | protein_coding |
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