transcript:BL85122_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85122_cuf0
Unique Nametranscript:BL85122_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85122_cuf0

>transcript:BL85122_cuf0-protein ID=transcript:BL85122_cuf0-protein|Name=transcript:BL85122_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=154bp
MSLRIRDVSNWSNVPGSLWPGSSVAPKDKTPREEKCGVVYHIPCQGTTRQ
GTCEEFYIGETERSLRTRFLEHKRPSSHSSEVSQHIHIESPGHTVSLDKV
RILDTEQDYFMRGIKEAIYIRALQPSLNRDSGRYKLPGTFDQLLTSRIRS
DMCQ
Run BLAST on NCBI

mRNA from alignment at Sc0000285:210652..211415+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85122_cuf0 ID=transcript:BL85122_cuf0|Name=transcript:BL85122_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=764bp|location=Sequence derived from alignment at Sc0000285:210652..211415+ (Branchiostoma lanceolatum)
TTATAATGAAAGCTCATCTGTGTTGGTAGTAATCATAATACAATGCTAAA
CTTTCTTCCAACACTAAGGTATTCACGGATCGAATTTTCGACGACCACTG
TCGCCTTCTTCAGGATCAATAATGACCAATCACTGCCGAACGTAAACTCG
CGAGAGTTACGGACACGTGACTCTATTGACACATGTCACTGCGGATACGT
GACGTCAGCAATTGGTCAAACGTGCCAGGAAGTTTATGGCCAGGAAGTTC
GGTGGCGCCGAAGGACAAAACCCCAAGAGAAGAGAAGTGCGGTGTAGTGT
ACCACATTCCGTGTCAGGGAACCACTAGACAAGGGACTTGTGAAGAATTC
TACATTGGTGAGACAGAACGCTCATTGAGAACTAGATTCCTTGAACACAA
ACGCCCCAGCTCGCATTCGTCTGAAGTCTCTCAACACATCCACATTGAAT
CTCCGGGCCATACCGTTTCGCTGGACAAAGTCAGAATTCTGGACACTGAA
CAGGACTACTTTATGAGAGGTATAAAGGAGGCCATATATATCAGGGCACT
CCAGCCGTCACTCAACAGAGACAGTGGGCGTTATAAACTTCCTGGCACGT
TTGACCAATTGCTGACGTCACGTATCCGCAGTGACATGTGTCAATAGAGT
CACGTGTCCGTAACTCTCGCGAGTTTACGTTCGGCAGTGATTGGTCATTA
TTGATCCTGAAGAAGGCGACAGTGGTCGTCGAAAATTCGATCCGTGAATA
CCTTAGTGTTGGAA

Coding sequence (CDS) from alignment at Sc0000285:210652..211415+

>transcript:BL85122_cuf0 ID=transcript:BL85122_cuf0|Name=transcript:BL85122_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=465bp|location=Sequence derived from alignment at Sc0000285:210652..211415+ (Branchiostoma lanceolatum)
ATGTCACTGCGGATACGTGACGTCAGCAATTGGTCAAACGTGCCAGGAAG
TTTATGGCCAGGAAGTTCGGTGGCGCCGAAGGACAAAACCCCAAGAGAAG
AGAAGTGCGGTGTAGTGTACCACATTCCGTGTCAGGGAACCACTAGACAA
GGGACTTGTGAAGAATTCTACATTGGTGAGACAGAACGCTCATTGAGAAC
TAGATTCCTTGAACACAAACGCCCCAGCTCGCATTCGTCTGAAGTCTCTC
AACACATCCACATTGAATCTCCGGGCCATACCGTTTCGCTGGACAAAGTC
AGAATTCTGGACACTGAACAGGACTACTTTATGAGAGGTATAAAGGAGGC
CATATATATCAGGGCACTCCAGCCGTCACTCAACAGAGACAGTGGGCGTT
ATAAACTTCCTGGCACGTTTGACCAATTGCTGACGTCACGTATCCGCAGT
GACATGTGTCAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85122gene:BL85122Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85122_cuf0-E1BL85122_cuf0-E1-1564476830-422993Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85122_cuf0transcript:BL85122_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000285genomeSc0000285:210652..211415 +
Properties
Property NameValue
Transcript idBL85122_cuf0
Biotypeprotein_coding