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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86450_cuf0 >transcript:BL86450_cuf0-protein ID=transcript:BL86450_cuf0-protein|Name=transcript:BL86450_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=759bp
AFKYSTMLLNNDTSRVQAEILKTHLHYLALNVDRHQTNVSIIGTHKFIRK
SAEFFHRWGGCEEAYLLLYGQARLLRGQHSTKDLPFHTLYFLNSLNRTLQ
SCPFNEDVNVDLLVQIADNLLKEAAYKYSKERDHHDIDSLPVDIYQVMNS
LENMSFFIYRRLLQSGKLNNVDYSRLPMSFFAYVSMHIDEIPFDMVQNIL
LSSPKTGATEGDHWMALSTLTSVAIRLIQPSALHDRRWMTDLLNAISRCD
DEVNCSDETRYMRSSLCCNSVKRFLPFLPSYRSDIQKATKIVTLVLSMYY
RSMDTSTCTNRYFEAILGLPRESKEFDILEFAREDWHDLLGDPGVLKSVL
SVTSTQNSKFRKTGLTNLQQDSIPPVKHLLFHIEVSIKYQANIVARQLGK
IIDQAKGQRSKHRESSSLPTEHCAALSEAVALIENNYVGCTWYVLRTQLR
TLKTAVDNCYSLQSSVADINRQIEFSKELFKLFNATNFEAKKLLRWLKTA
KVPVVSQLQKTLETFMGLFHQTSFSKWDVRFDNFKTILKDCILGDSRITI
CSLCRDLMEELISRNGKLRHDSRRTLAMCKKDRFEIYERTKIIPENLSLI
SRFEPWLDMVGNPFVKADCSFVSPSSKYTFQSKSRFPHTLWVWNRLKEML
EYANGSLTVTGINMRCLLKFTNALNKFLSKRDSTCDNGNAKQRVEMVFGV
HLFDGGKKFHFEQKDDRVTGVTHKERKRTLAYTQYHGLHYLTHVQDIRTS
LNRKQKPRL Run BLAST on NCBI mRNA from alignment at xfSc0001373:6..3003+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86450_cuf0 ID=transcript:BL86450_cuf0|Name=transcript:BL86450_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2998bp|location=Sequence derived from alignment at xfSc0001373:6..3003+ (Branchiostoma lanceolatum)
CGCATTCAAATATTCGACAATGTTACTCAATAATGACACATCCAGGGTAC
AGGCGGAGATCTTGAAGACACATCTCCATTATTTAGCACTAAATGTCGAC
AGGCACCAAACAAATGTCTCCATCATTGGTACACACAAATTCATAAGAAA
GTCCGCTGAGTTTTTTCATCGATGGGGGGGTTGTGAAGAGGCGTACCTTC
TCCTTTATGGTCAAGCACGCCTACTTCGCGGACAACATTCCACTAAGGAT
CTGCCCTTTCACACCCTTTATTTTTTAAACTCTCTTAACCGCACTCTGCA
GTCTTGTCCGTTTAACGAAGATGTAAATGTTGACCTACTGGTACAGATTG
CGGATAACCTGCTTAAGGAAGCGGCATATAAATACAGCAAAGAACGTGAC
CACCATGACATTGACTCGCTCCCGGTTGATATCTATCAGGTCATGAACTC
ATTGGAAAATATGTCTTTCTTTATTTATAGGAGACTTCTTCAAAGTGGAA
AACTTAACAATGTTGATTATTCTAGGCTTCCGATGTCATTTTTCGCGTAT
GTATCAATGCATATAGACGAAATACCGTTTGACATGGTGCAAAATATACT
GCTTTCAAGCCCAAAGACAGGTGCAACGGAAGGAGACCATTGGATGGCGT
TGAGCACACTGACATCTGTTGCAATTAGATTGATTCAGCCATCAGCCCTG
CATGATCGTCGATGGATGACAGATTTACTCAATGCCATTTCGCGGTGTGA
TGATGAAGTGAATTGCAGCGATGAAACAAGATACATGCGATCATCGCTTT
GCTGCAATTCGGTGAAGCGCTTTCTGCCATTTCTGCCATCTTACAGAAGT
GATATACAAAAAGCTACAAAGATAGTCACCCTGGTGCTATCGATGTACTA
CCGCTCCATGGACACCTCTACTTGCACTAACAGATACTTTGAAGCGATAC
TCGGACTGCCCAGGGAGAGTAAAGAGTTTGACATCCTAGAATTTGCTCGT
GAGGACTGGCACGATCTGTTAGGGGACCCTGGAGTGCTGAAGAGTGTCCT
GTCCGTTACTAGCACACAGAACTCCAAGTTTAGAAAAACAGGCCTTACCA
ATTTACAACAAGACTCCATTCCTCCTGTGAAACACCTCTTGTTCCACATT
GAGGTAAGCATAAAGTATCAAGCAAATATTGTGGCACGTCAGCTTGGGAA
AATCATCGATCAGGCCAAAGGGCAGAGGTCAAAGCATAGAGAATCTTCGT
CCTTACCCACAGAACATTGTGCCGCTCTATCCGAGGCTGTAGCTTTGATA
GAAAATAACTATGTAGGGTGCACGTGGTATGTGCTTCGCACACAACTTCG
GACATTAAAGACAGCAGTTGATAATTGCTATAGTCTACAGTCATCTGTTG
CAGACATCAACAGACAAATAGAATTTTCAAAAGAGCTATTCAAATTGTTC
AATGCCACGAATTTTGAAGCCAAAAAACTTTTACGCTGGCTAAAAACTGC
AAAAGTCCCTGTCGTTTCTCAGCTCCAAAAGACTCTGGAAACATTTATGG
GTCTTTTCCACCAGACATCATTTTCAAAATGGGACGTAAGGTTTGATAAC
TTCAAGACCATTTTAAAGGACTGTATTCTTGGTGACAGCAGAATAACCAT
ATGTTCGTTATGTCGGGATCTAATGGAAGAGCTTATTAGTAGGAACGGTA
AGTTAAGACATGATTCAAGAAGGACACTTGCAATGTGTAAAAAGGACAGA
TTTGAAATATATGAAAGAACCAAAATCATTCCAGAAAATTTAAGCCTCAT
CAGTAGATTCGAACCGTGGCTGGACATGGTCGGAAACCCCTTTGTTAAAG
CAGACTGTTCATTTGTAAGTCCTTCCTCGAAATATACCTTCCAATCTAAG
AGTCGTTTTCCACACACTCTTTGGGTCTGGAACAGACTGAAAGAAATGTT
AGAATATGCAAACGGTTCACTTACTGTTACGGGAATCAACATGAGATGCC
TTCTAAAATTCACGAACGCTTTGAACAAGTTTTTGAGCAAGCGCGATAGT
ACATGTGACAACGGAAATGCGAAACAGAGGGTAGAAATGGTCTTTGGGGT
ACATCTTTTTGACGGAGGAAAAAAATTCCATTTTGAGCAGAAAGATGATA
GAGTTACCGGCGTGACCCACAAAGAACGGAAACGGACTCTGGCCTACACC
CAGTATCATGGCCTGCATTACCTTACTCATGTACAGGACATTAGAACAAG
CTTAAATAGAAAGCAAAAACCACGACTGTGATGTACATGTAAACGTCTGC
TGTGACGGAACAATATGGTTTCTGTATAATGTGTCGAATTTGTAGTTTCA
AATGTTAGACACAGTTATAAAATAAAGACACTCTAGATTATGCACGGTGT
GTTGCAGCTTTGTTCTCCAAGCTATCAGCATTGACCAGGAATAGAAAACA
CTAAGGGCAATAACGATATAAGTTACGTATTCATGACGTCGCCTGGTTTT
GTCCAGGTGGTTGCAAGCGTCATAGAGTCTCTATATTATGTGTACTGGAA
TGGAAGCTGACATCCCGGGCCTTACTTGCATCTTACAACGGACAGTTTGG
CAACTAGTATCAGTGCATTGATAATGGGAAACTTTCTTGACACATGAGGG
TTTTATCCAAAAGTTATCATGTACGTTGAAAGATATGGAACAACCGTATT
CGAGCAAGCTTTCTATGAAATCCCATGGAAGTATTCATAGTATTTTACAA
TTTTCCTGGCTAATGCCCTAAGACAAATACAACAATACTCGGAGATATAT
CATATAACAATATTATGATATACATTATGTAATTGTGCATAAAAATAAGT
TTCGCCAAAGTGGGATTTCATTTATTTATCCCATGATCTAGTGAAAGTGA
GCAACACATTTCCGCAGTTGCATGGATTAAAGGGTTATACTGTAGTAATA
CGTGACTGTGTATTATTTCCAACAATATTTCCCAGAGGCTATTTGGGA Coding sequence (CDS) from alignment at xfSc0001373:6..3003+ >transcript:BL86450_cuf0 ID=transcript:BL86450_cuf0|Name=transcript:BL86450_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2280bp|location=Sequence derived from alignment at xfSc0001373:6..3003+ (Branchiostoma lanceolatum)
GCATTCAAATATTCGACAATGTTACTCAATAATGACACATCCAGGGTACA
GGCGGAGATCTTGAAGACACATCTCCATTATTTAGCACTAAATGTCGACA
GGCACCAAACAAATGTCTCCATCATTGGTACACACAAATTCATAAGAAAG
TCCGCTGAGTTTTTTCATCGATGGGGGGGTTGTGAAGAGGCGTACCTTCT
CCTTTATGGTCAAGCACGCCTACTTCGCGGACAACATTCCACTAAGGATC
TGCCCTTTCACACCCTTTATTTTTTAAACTCTCTTAACCGCACTCTGCAG
TCTTGTCCGTTTAACGAAGATGTAAATGTTGACCTACTGGTACAGATTGC
GGATAACCTGCTTAAGGAAGCGGCATATAAATACAGCAAAGAACGTGACC
ACCATGACATTGACTCGCTCCCGGTTGATATCTATCAGGTCATGAACTCA
TTGGAAAATATGTCTTTCTTTATTTATAGGAGACTTCTTCAAAGTGGAAA
ACTTAACAATGTTGATTATTCTAGGCTTCCGATGTCATTTTTCGCGTATG
TATCAATGCATATAGACGAAATACCGTTTGACATGGTGCAAAATATACTG
CTTTCAAGCCCAAAGACAGGTGCAACGGAAGGAGACCATTGGATGGCGTT
GAGCACACTGACATCTGTTGCAATTAGATTGATTCAGCCATCAGCCCTGC
ATGATCGTCGATGGATGACAGATTTACTCAATGCCATTTCGCGGTGTGAT
GATGAAGTGAATTGCAGCGATGAAACAAGATACATGCGATCATCGCTTTG
CTGCAATTCGGTGAAGCGCTTTCTGCCATTTCTGCCATCTTACAGAAGTG
ATATACAAAAAGCTACAAAGATAGTCACCCTGGTGCTATCGATGTACTAC
CGCTCCATGGACACCTCTACTTGCACTAACAGATACTTTGAAGCGATACT
CGGACTGCCCAGGGAGAGTAAAGAGTTTGACATCCTAGAATTTGCTCGTG
AGGACTGGCACGATCTGTTAGGGGACCCTGGAGTGCTGAAGAGTGTCCTG
TCCGTTACTAGCACACAGAACTCCAAGTTTAGAAAAACAGGCCTTACCAA
TTTACAACAAGACTCCATTCCTCCTGTGAAACACCTCTTGTTCCACATTG
AGGTAAGCATAAAGTATCAAGCAAATATTGTGGCACGTCAGCTTGGGAAA
ATCATCGATCAGGCCAAAGGGCAGAGGTCAAAGCATAGAGAATCTTCGTC
CTTACCCACAGAACATTGTGCCGCTCTATCCGAGGCTGTAGCTTTGATAG
AAAATAACTATGTAGGGTGCACGTGGTATGTGCTTCGCACACAACTTCGG
ACATTAAAGACAGCAGTTGATAATTGCTATAGTCTACAGTCATCTGTTGC
AGACATCAACAGACAAATAGAATTTTCAAAAGAGCTATTCAAATTGTTCA
ATGCCACGAATTTTGAAGCCAAAAAACTTTTACGCTGGCTAAAAACTGCA
AAAGTCCCTGTCGTTTCTCAGCTCCAAAAGACTCTGGAAACATTTATGGG
TCTTTTCCACCAGACATCATTTTCAAAATGGGACGTAAGGTTTGATAACT
TCAAGACCATTTTAAAGGACTGTATTCTTGGTGACAGCAGAATAACCATA
TGTTCGTTATGTCGGGATCTAATGGAAGAGCTTATTAGTAGGAACGGTAA
GTTAAGACATGATTCAAGAAGGACACTTGCAATGTGTAAAAAGGACAGAT
TTGAAATATATGAAAGAACCAAAATCATTCCAGAAAATTTAAGCCTCATC
AGTAGATTCGAACCGTGGCTGGACATGGTCGGAAACCCCTTTGTTAAAGC
AGACTGTTCATTTGTAAGTCCTTCCTCGAAATATACCTTCCAATCTAAGA
GTCGTTTTCCACACACTCTTTGGGTCTGGAACAGACTGAAAGAAATGTTA
GAATATGCAAACGGTTCACTTACTGTTACGGGAATCAACATGAGATGCCT
TCTAAAATTCACGAACGCTTTGAACAAGTTTTTGAGCAAGCGCGATAGTA
CATGTGACAACGGAAATGCGAAACAGAGGGTAGAAATGGTCTTTGGGGTA
CATCTTTTTGACGGAGGAAAAAAATTCCATTTTGAGCAGAAAGATGATAG
AGTTACCGGCGTGACCCACAAAGAACGGAAACGGACTCTGGCCTACACCC
AGTATCATGGCCTGCATTACCTTACTCATGTACAGGACATTAGAACAAGC
TTAAATAGAAAGCAAAAACCACGACTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0001373 | genome | xfSc0001373:6..3003 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86450_cuf0 |
| Biotype | protein_coding |
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