transcript:BL86578_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86578_cuf0
Unique Nametranscript:BL86578_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86578_cuf0

>transcript:BL86578_cuf0-protein ID=transcript:BL86578_cuf0-protein|Name=transcript:BL86578_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=189bp
DETLPDDLKNAVITIIYKTGDRSDCGNYRGIALLSTAGKILARALLNRLL
PLSEGILPETQCGFRPSKGTVDMIFTARQIQEKCTEQRQPLFMAFIDLTK
AFDSLNREALWKILKRFGCPDKFITILRLLHDGMTAKVLYNGSETEPFTI
KTGVKQGCILAPTIFDIYLFAVLLLIKDHLPPGVTIRYR
Run BLAST on NCBI

mRNA from alignment at Sc0000217:334718..335286+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86578_cuf0 ID=transcript:BL86578_cuf0|Name=transcript:BL86578_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=569bp|location=Sequence derived from alignment at Sc0000217:334718..335286+ (Branchiostoma lanceolatum)
AGGATGAAACTCTACCAGACGACCTTAAGAACGCAGTAATAACTATTATC
TACAAGACAGGTGATAGATCAGACTGTGGGAATTACCGGGGAATCGCCCT
TCTGTCAACGGCTGGTAAAATCTTGGCAAGAGCACTCCTGAATCGACTCC
TTCCCCTGAGCGAGGGAATACTGCCTGAAACTCAGTGTGGTTTTAGGCCA
TCCAAAGGTACTGTAGACATGATTTTCACTGCCAGACAAATACAAGAGAA
ATGTACAGAACAACGACAGCCTCTCTTCATGGCCTTTATTGATCTGACTA
AGGCTTTCGATTCCCTGAATCGTGAGGCACTTTGGAAGATACTGAAGCGG
TTTGGTTGCCCGGATAAATTCATAACAATACTTCGACTGCTACACGATGG
AATGACTGCCAAGGTACTCTACAATGGCTCAGAAACTGAACCATTTACGA
TTAAGACCGGTGTAAAACAAGGGTGTATATTAGCACCCACAATCTTTGAC
ATTTACCTGTTTGCTGTTCTGCTACTGATCAAAGACCACCTTCCACCTGG
AGTGACAATCAGATACCGT

Coding sequence (CDS) from alignment at Sc0000217:334718..335286+

>transcript:BL86578_cuf0 ID=transcript:BL86578_cuf0|Name=transcript:BL86578_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=567bp|location=Sequence derived from alignment at Sc0000217:334718..335286+ (Branchiostoma lanceolatum)
GATGAAACTCTACCAGACGACCTTAAGAACGCAGTAATAACTATTATCTA
CAAGACAGGTGATAGATCAGACTGTGGGAATTACCGGGGAATCGCCCTTC
TGTCAACGGCTGGTAAAATCTTGGCAAGAGCACTCCTGAATCGACTCCTT
CCCCTGAGCGAGGGAATACTGCCTGAAACTCAGTGTGGTTTTAGGCCATC
CAAAGGTACTGTAGACATGATTTTCACTGCCAGACAAATACAAGAGAAAT
GTACAGAACAACGACAGCCTCTCTTCATGGCCTTTATTGATCTGACTAAG
GCTTTCGATTCCCTGAATCGTGAGGCACTTTGGAAGATACTGAAGCGGTT
TGGTTGCCCGGATAAATTCATAACAATACTTCGACTGCTACACGATGGAA
TGACTGCCAAGGTACTCTACAATGGCTCAGAAACTGAACCATTTACGATT
AAGACCGGTGTAAAACAAGGGTGTATATTAGCACCCACAATCTTTGACAT
TTACCTGTTTGCTGTTCTGCTACTGATCAAAGACCACCTTCCACCTGGAG
TGACAATCAGATACCGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86578gene:BL86578Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86578_cuf0-E1BL86578_cuf0-E1-1564476830-393656Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86578_cuf0transcript:BL86578_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000217genomeSc0000217:334718..335286 +
Properties
Property NameValue
Transcript idBL86578_cuf0
Biotypeprotein_coding