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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86619_cuf0 >transcript:BL86619_cuf0-protein ID=transcript:BL86619_cuf0-protein|Name=transcript:BL86619_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=304bp
MQQQDREPFLRQCAELCVKLKMTMLVLWVICTVAWARVGTQAAVGDMIPG
DVDTNEESASHHDAKETSNHPLAAATFEDCADLYPVLYWINSVQDGVFPI
KPESSTDHFDVYCDMTTDGGGWTVIQRRFEGRVNFNRNWADYKKGFGRVE
GEHWLGLAKMHNLTTQNSYELYVELEDWEGNFAYAKYDTFSIGDESTDYT
LHLGGYSGDAGDSMIYYGNGMKFSTTDVDNDVSSNAHCAQWVSAGWWYSS
CANSVLNGPYFQLEDYHGVDTGFGMWWYTWKGTQWYSLKSTKMMVRPRNF
IRKL Run BLAST on NCBI mRNA from alignment at Sc0000010:5515554..5517945- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86619_cuf0 ID=transcript:BL86619_cuf0|Name=transcript:BL86619_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2392bp|location=Sequence derived from alignment at Sc0000010:5515554..5517945- (Branchiostoma lanceolatum)
AGTCTGCCATATCAACTTTTAAGAAGACTGTTGACAAGTCCACAGTACAA
CGGATGAACAACCAGTTAAATCAACAGGAATGATAATTATAGCTCCTCCG
CAGTCAATGCGTCAGCAGATTTGGCAGAAAAACAAGTTTGCTATAAAAGA
GCGACAACCCGCCGAGGTAGAACACTGTACATGCAGCAGCAAGACCGGGA
ACCATTTCTTCGGCAGTGTGCAGAACTTTGTGTGAAACTCAAGGTGATTC
TAGTTTACATTGTACTATCTTCTTTGTTGTTGTCAATATACACTACGTTC
ATGATGCCAACAATGTAAAACCTCTTCCCATTTACAGTAAATGTAATGAA
AACACAATAATGATAATCTCTATATGCAATTTCATACCCATAGGGTATTC
ATTGAAAGGGCAACTGTTAAGATATCTAATCTAAAGATCTATCTGTTGTT
CCTATGCACAGTTAAGAATTGCCGAGAAGAAGACTCAGGGACCGATAAAA
TGTCGTCTATATGGACATGTGGTCATTATGAACAGGATTGTGTCAAAGAA
AAGATTATCTTAATTAAGGACCACCAAAATGTGGTCACATTGGCAAGGGG
GGTTCTTATGCAGAATAGGTCACTTTACAGGTTTGCCTGGCTTCTTCTTT
GAAGGCAGTGGCTAATGAATAGTGCCAAGTTTTAATTATAGTTTATATAT
ATATATACAACAAGCCCATTGACAGTCATTGTTCAATTTAGGCAAAGAAC
GAATCTCAAAATAACTGAAAACACTCTATCCCGCCATTGTTCTACAGATG
ACCATGCTCGTACTGTGGGTTATCTGCACCGTAGCCTGGGCACGCGTGGG
AACTCAGGCAGCTGTAGGGGACATGATCCCCGGGGATGTGGACACAAATG
GTATGCTGGATTTTCAGGCGTGAGACTTTTAAGACCTACAACATATATTT
CCTCTCATGCATTTTAACTATTCTACATTGGTTTTTTGATTCGGTGGCAA
CACTACTATGTCCAAATAGCGGATCATAGGGCTTTAAACGGAAGTGCGTC
GTACGTCAGTATGACCGCAATAGAAAATTGACGCAAATCTGCGATGTCTA
AGTGCAATTAGTGTAGTCCATTAAGATAACAGCTTGATTCACTTCAATGT
GTTTTACCCACTCACAGAAGAGTCTGCAAGCCACCATGACGCCAAAGAAA
CCAGTAACCATCCCCTAGCTGCTGCTACCTTCGAGGACTGCGCAGACCTG
TACCCTGTACTCTACTGGATCAACTCAGTGCAGGATGGAGTCTTCCCCAT
CAAACCCGAGTCTTCCACCGACCACTTTGACGTCTACTGTGACATGACTA
CAGACGGTGGGGGCTGGACTGTCATACAGAGGAGGTTTGAAGGAAGGGTC
AATTTCAATAGAAACTGGGCAGATTACAAGAAGGGGTTTGGGAGGGTCGA
GGGGGAACACTGGCTTGGACTAGCTAAAATGCACAACCTGACCACCCAGA
ATAGCTATGAACTGTATGTGGAGTTAGAGGATTGGGAAGGTAACTTTGCT
TATGCTAAATATGATACCTTCAGCATTGGGGATGAGAGTACAGATTACAC
ACTGCACCTTGGAGGTTATAGCGGGGATGCCGGAGACTCTATGATTTATT
ATGGCAATGGTATGAAATTTAGTACTACAGATGTGGACAATGATGTGTCC
AGTAACGCACACTGTGCTCAGTGGGTTTCAGCTGGCTGGTGGTACAGCAG
CTGTGCTAACTCAGTTCTGAACGGTCCCTATTTCCAGTTAGAGGACTATC
ACGGGGTCGACACTGGGTTTGGTATGTGGTGGTATACATGGAAGGGTACT
CAGTGGTACTCACTGAAATCCACCAAGATGATGGTACGGCCTCGAAACTT
CATCCGCAAGCTGTGACTTAACAGCTAATCATACAAAAATCAATCTTTAC
CACATTCCATGTGACAGTTCTGTGGGCCTGTAATAGTGTGATTAGTCAGT
ATTAATTATGTATACATACACTGGACATGTATAAGTAGCAGCTTTGCATG
TATGTTTATGTACAGAATCTGATGCATAGTAAATTGGAAAGGAAATATCA
TGACCACCGTTGAGTATCAAGGATATGGTTTGCGATATTAAGTGACTGTG
TGAACTTATATGTACATTCAACTTTAGAAATTCTAAATGTACTACTTTGT
CTTTATATAGTTCAAATATCGACTGAAATGTCGTCGTTTGACAAGAATGA
ACAGACTAGTGCTATGCTTGGTTGTATTTAGGCAATAGTAGTACCATACA
AAAGTTCAGAGACTGTGTATTATTGTAACACAAAATGTGTTATCATTATC
GTAATATTGAATGGAGGAGCAATCCTCAAAGGAAAGAAGTCC Coding sequence (CDS) from alignment at Sc0000010:5515554..5517945- >transcript:BL86619_cuf0 ID=transcript:BL86619_cuf0|Name=transcript:BL86619_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2745bp|location=Sequence derived from alignment at Sc0000010:5515554..5517945- (Branchiostoma lanceolatum)
ATGCAGCAGCAAGACCGGGAACCATTTCTTCGGCAGTGTGCAGAACTTTG
TGTGAAACTCAAGATGACCATGCTCGTACTGTGGGTTATCTGCACCGTAG
CCTGGGCACGCGTGGGAACTCAGGCAGCTGTAGGGGACATGATCCCCGGG
GATGTGGACACAAATGAAGAGTCTGCAAGCCACCATGACGCCAAAGAAAC
CAGTAACCATCCCCTAGCTGCTGCTACCTTCGAGGACTGCGCAGACCTGT
ACCCTGTACTCTACTGGATCAACTCAGTGCAGGATGGAGTCTTCCCCATC
AAACCCGAGTCTTCCACCGACCACTTTGACGTCTACTGTGACATGACTAC
AGACGGTGGGGGCTGGACTGTCATACAGAGGAGGTTTGAAGGAAGGGTCA
ATTTCAATAGAAACTGGGCAGATTACAAGAAGGGGTTTGGGAGGGTCGAG
GGGGAACACTGGCTTGGACTAGCTAAAATGCACAACCTGACCACCCAGAA
TAGCTATGAACTGTATGTGGAGTTAGAGGATTGGGAAGGTAACTTTGCTT
ATGCTAAATATGATACCTTCAGCATTGGGGATGAGAGTACAGATTACACA
CTGCACCTTGGAGGTTATAGCGGGGATGCCGGAGACTCTATGATTTATTA
TGGCAATGGTATGAAATTTAGTACTACAGATGTGGACAATGATGTGTCCA
GTAACGCACACTGTGCTCAGTGGGTTTCAGCTGGCTGGTGGTACAGCAGC
TGTGCTAACTCAGTTCTGAACGGTCCCTATTTCCAGTTAGAGGACTATCA
CGGGGTCGACACTGGGTTTGGTATGTGGTGGTATACATGGAAGGGTACTC
AGTGGTACTCACTGAAATCCACCAAGATGATGGTACGGCCTCGAAACTTC
ATCCGCAAGCTGTGAATGCAGCAGCAAGACCGGGAACCATTTCTTCGGCA
GTGTGCAGAACTTTGTGTGAAACTCAAGATGACCATGCTCGTACTGTGGG
TTATCTGCACCGTAGCCTGGGCACGCGTGGGAACTCAGGCAGCTGTAGGG
GACATGATCCCCGGGGATGTGGACACAAATGAAGAGTCTGCAAGCCACCA
TGACGCCAAAGAAACCAGTAACCATCCCCTAGCTGCTGCTACCTTCGAGG
ACTGCGCAGACCTGTACCCTGTACTCTACTGGATCAACTCAGTGCAGGAT
GGAGTCTTCCCCATCAAACCCGAGTCTTCCACCGACCACTTTGACGTCTA
CTGTGACATGACTACAGACGGTGGGGGCTGGACTGTCATACAGAGGAGGT
TTGAAGGAAGGGTCAATTTCAATAGAAACTGGGCAGATTACAAGAAGGGG
TTTGGGAGGGTCGAGGGGGAACACTGGCTTGGACTAGCTAAAATGCACAA
CCTGACCACCCAGAATAGCTATGAACTGTATGTGGAGTTAGAGGATTGGG
AAGGTAACTTTGCTTATGCTAAATATGATACCTTCAGCATTGGGGATGAG
AGTACAGATTACACACTGCACCTTGGAGGTTATAGCGGGGATGCCGGAGA
CTCTATGATTTATTATGGCAATGGTATGAAATTTAGTACTACAGATGTGG
ACAATGATGTGTCCAGTAACGCACACTGTGCTCAGTGGGTTTCAGCTGGC
TGGTGGTACAGCAGCTGTGCTAACTCAGTTCTGAACGGTCCCTATTTCCA
GTTAGAGGACTATCACGGGGTCGACACTGGGTTTGGTATGTGGTGGTATA
CATGGAAGGGTACTCAGTGGTACTCACTGAAATCCACCAAGATGATGGTA
CGGCCTCGAAACTTCATCCGCAAGCTGTGAATGCAGCAGCAAGACCGGGA
ACCATTTCTTCGGCAGTGTGCAGAACTTTGTGTGAAACTCAAGATGACCA
TGCTCGTACTGTGGGTTATCTGCACCGTAGCCTGGGCACGCGTGGGAACT
CAGGCAGCTGTAGGGGACATGATCCCCGGGGATGTGGACACAAATGAAGA
GTCTGCAAGCCACCATGACGCCAAAGAAACCAGTAACCATCCCCTAGCTG
CTGCTACCTTCGAGGACTGCGCAGACCTGTACCCTGTACTCTACTGGATC
AACTCAGTGCAGGATGGAGTCTTCCCCATCAAACCCGAGTCTTCCACCGA
CCACTTTGACGTCTACTGTGACATGACTACAGACGGTGGGGGCTGGACTG
TCATACAGAGGAGGTTTGAAGGAAGGGTCAATTTCAATAGAAACTGGGCA
GATTACAAGAAGGGGTTTGGGAGGGTCGAGGGGGAACACTGGCTTGGACT
AGCTAAAATGCACAACCTGACCACCCAGAATAGCTATGAACTGTATGTGG
AGTTAGAGGATTGGGAAGGTAACTTTGCTTATGCTAAATATGATACCTTC
AGCATTGGGGATGAGAGTACAGATTACACACTGCACCTTGGAGGTTATAG
CGGGGATGCCGGAGACTCTATGATTTATTATGGCAATGGTATGAAATTTA
GTACTACAGATGTGGACAATGATGTGTCCAGTAACGCACACTGTGCTCAG
TGGGTTTCAGCTGGCTGGTGGTACAGCAGCTGTGCTAACTCAGTTCTGAA
CGGTCCCTATTTCCAGTTAGAGGACTATCACGGGGTCGACACTGGGTTTG
GTATGTGGTGGTATACATGGAAGGGTACTCAGTGGTACTCACTGAAATCC
ACCAAGATGATGGTACGGCCTCGAAACTTCATCCGCAAGCTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000010 | genome | Sc0000010:5515554..5517945 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86619_cuf0 |
| Biotype | protein_coding |
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