transcript:BL86645_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86645_cuf0
Unique Nametranscript:BL86645_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86645_cuf0

>transcript:BL86645_cuf0-protein ID=transcript:BL86645_cuf0-protein|Name=transcript:BL86645_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=111bp
QIIAITMNEDESLADLKTRVGEPDVMLTEDAPEDGKTQPYVALSLSTEQY
KSTAVVQIGDGGPCGHQWCCERSELADPRLAKTSGNKELLSGETYTAAVR
CYVDSGARRRK
Run BLAST on NCBI

mRNA from alignment at Sc0000009:213600..214223-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86645_cuf0 ID=transcript:BL86645_cuf0|Name=transcript:BL86645_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=624bp|location=Sequence derived from alignment at Sc0000009:213600..214223- (Branchiostoma lanceolatum)
GCCAAATCATCGCCATCACCATGAATGAAGACGAGAGCCTTGCTGACCTG AAAACAAGAGTTGGAGAACCTGACGTCATGCTTACCGAGGACGCTCCTGA GGACGGGAAAACTCAACCTTACGTAGCTTTATCACTTTCAACGTAAGCTT GTTTATATCTTATTGCATGGTACAACTAGGAAATCGTTAGATATCATATG TTCTACGAACATACCAGGATGGACCAATCACAATGTATAATCTTATTTTA AGACAACCAACATTGCTTCTTTATATTTATTGAAGGGGTGTTGTTTGCAT CAATATGACATAATGTTTGTTTTGTTTTGAGACTGTTTTCTCAACGTCTC AATGTAAACATTTCTTTTATTAGGTTTCATGAAGTGCTTTCATTGCATTT TATTACTTTCATCCATGGTTCTTCCACCAGAGAGCAGTACAAAAGCACAG CTGTAGTCCAGATCGGTGATGGGGGACCCTGTGGTCACCAGTGGTGCTGT GAGCGGAGTGAACTTGCCGATCCCAGACTCGCAAAGACTTCAGGAAACAA GGAGCTCCTGTCAGGGGAGACGTACACAGCAGCAGTAAGATGTTACGTGG ACTCTGGTGCCAGGAGACGCAAGC

Coding sequence (CDS) from alignment at Sc0000009:213600..214223-

>transcript:BL86645_cuf0 ID=transcript:BL86645_cuf0|Name=transcript:BL86645_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=666bp|location=Sequence derived from alignment at Sc0000009:213600..214223- (Branchiostoma lanceolatum)
CAAATCATCGCCATCACCATGAATGAAGACGAGAGCCTTGCTGACCTGAA
AACAAGAGTTGGAGAACCTGACGTCATGCTTACCGAGGACGCTCCTGAGG
ACGGGAAAACTCAACCTTACGTAGCTTTATCACTTTCAACAGAGCAGTAC
AAAAGCACAGCTGTAGTCCAGATCGGTGATGGGGGACCCTGTGGTCACCA
GTGGTGCTGTGAGCGGAGTGAACTTGCCGATCCCAGACTCGCAAAGACTT
CAGGAAACAAGGAGCTCCTGTCAGGGGAGACGTACACAGCAGCAGTAAGA
TGTTACGTGGACTCTGGTGCCAGGAGACGCAAGCAAATCATCGCCATCAC
CATGAATGAAGACGAGAGCCTTGCTGACCTGAAAACAAGAGTTGGAGAAC
CTGACGTCATGCTTACCGAGGACGCTCCTGAGGACGGGAAAACTCAACCT
TACGTAGCTTTATCACTTTCAACAGAGCAGTACAAAAGCACAGCTGTAGT
CCAGATCGGTGATGGGGGACCCTGTGGTCACCAGTGGTGCTGTGAGCGGA
GTGAACTTGCCGATCCCAGACTCGCAAAGACTTCAGGAAACAAGGAGCTC
CTGTCAGGGGAGACGTACACAGCAGCAGTAAGATGTTACGTGGACTCTGG
TGCCAGGAGACGCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86645gene:BL86645Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86645_cuf0-E1BL86645_cuf0-E1-1564476830-88435Branchiostoma lanceolatumexon
BL86645_cuf0-E2BL86645_cuf0-E2-1564476830-88432Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86645_cuf0transcript:BL86645_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:213600..214223 -
Properties
Property NameValue
Transcript idBL86645_cuf0
Biotypeprotein_coding