transcript:BL86899_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86899_cuf0
Unique Nametranscript:BL86899_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86899_cuf0

>transcript:BL86899_cuf0-protein ID=transcript:BL86899_cuf0-protein|Name=transcript:BL86899_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
VQKFLLHTGFFLYAVQKFLLLTGKIFSQSELAKRLPARKDSARNMAAAMK
AGDKFSNWADFQAALLLNEYQEASSKQEMTRNNRAQPHLSDEVMGFIEQL
TLGSSGRGVDSF
Run BLAST on NCBI

mRNA from alignment at xfSc0000323:4902..5667-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86899_cuf0 ID=transcript:BL86899_cuf0|Name=transcript:BL86899_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=766bp|location=Sequence derived from alignment at xfSc0000323:4902..5667- (Branchiostoma lanceolatum)
GTGCAAAAATTTCTACTGCATACAGGATTTTTCCTGTATGCAGTGCAAAA
ATTTCTACTGCTGACAGGAAAAATTTTCAGCCAATCAGAGCTCGCAAAAA
GATTGCCCGCGCGAAAGGACTCAGCGAGGAACATGGCGGCAGCCATGAAG
GCTGGAGATAAGTTTTCCAACTGGGCGGATTTCCAGGCCGCCCTGTTACT
GAATGAGTACCAAGAGGCCAGCAGTAAACAAGAAATGACTCGTAATAATA
GAGCACAACCACACCTGTCTGATGAAGTCATGGGATTTATTGAACAATTG
ACATTAGGATCCAGTGGGAGGGGGGTGGATTCCTTCTAATAAGTTCTATT
AAAAGTGCGTTTCTCAAGCTGTCGATTCGACGGATTCAAAAATTTCAGCA
TAAAAAAGAGTCAGTTGTGATAACGAAACGGCTGTTACTTGTACGTTGTA
CGTTAACTAGTAGTTCAGCTCAATTAATAGAGGGCTCGGATGGGAGTATC
AGTACCCAGGAGCATGTCAGAAATTTGGCACCTAGCATCGATGACATTTG
AGATAAAACATGACTATAATCACGATCCGAAATATGCCCCATGAATAGGT
TAAGCCTAGCTGAAATTATGAAATTAAAATTGCCCGGTTTCCAGCTCATG
CGTTCGCCGGATCCGATCGGATCGCGCTGATATCACCTGGTAGGTCCTTA
GATACGCTGTGATGATGGCCGACATCTTGAAACACCTAATATCTGCTGTT
ACCGTAATAATTACAT

Coding sequence (CDS) from alignment at xfSc0000323:4902..5667-

>transcript:BL86899_cuf0 ID=transcript:BL86899_cuf0|Name=transcript:BL86899_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=339bp|location=Sequence derived from alignment at xfSc0000323:4902..5667- (Branchiostoma lanceolatum)
GTGCAAAAATTTCTACTGCATACAGGATTTTTCCTGTATGCAGTGCAAAA
ATTTCTACTGCTGACAGGAAAAATTTTCAGCCAATCAGAGCTCGCAAAAA
GATTGCCCGCGCGAAAGGACTCAGCGAGGAACATGGCGGCAGCCATGAAG
GCTGGAGATAAGTTTTCCAACTGGGCGGATTTCCAGGCCGCCCTGTTACT
GAATGAGTACCAAGAGGCCAGCAGTAAACAAGAAATGACTCGTAATAATA
GAGCACAACCACACCTGTCTGATGAAGTCATGGGATTTATTGAACAATTG
ACATTAGGATCCAGTGGGAGGGGGGTGGATTCCTTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86899gene:BL86899Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86899_cuf0-E1BL86899_cuf0-E1-1564476830-515935Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86899_cuf0transcript:BL86899_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0000323genomexfSc0000323:4902..5667 -
Properties
Property NameValue
Transcript idBL86899_cuf0
Biotypeprotein_coding