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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87252_cuf1 >transcript:BL87252_cuf1-protein ID=transcript:BL87252_cuf1-protein|Name=transcript:BL87252_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=185bp
NIDVGISPTSEDNPRQTSAQNDIWERDAIMEYKPQVLPKLTCRPGYSLHK
DMCYKTFPTPLNWVRAYTACLGECGQLAEPRTKDIDEFLISLKNAADPQN
NFWFGLRRHYTKREQFIWSTDLDDIIDMNTSYTNWAPGQPDDVYGYEDCV
FYFAKDSNVSNDTWNNASCFTSLPYLCSTKPLEIQ Run BLAST on NCBI mRNA from alignment at Sc0000017:990938..994678- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87252_cuf1 ID=transcript:BL87252_cuf1|Name=transcript:BL87252_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3741bp|location=Sequence derived from alignment at Sc0000017:990938..994678- (Branchiostoma lanceolatum)
GTAACATTGATGTGGGTATTTCACCGACTTCTGAGGACAACCCACGCCAA
ACGTCTGCTCAAAATGGTGAGTTGTCGTACCAAAAGTCGCATGACACATA
CAAGTATGTCCAATCTGATCTAATGCAGTTACGCCAAGCTCTGGACAACG
CCACGAACATGCTGAATACTATATACAGTATAAGTTATCGTAAACTTCAA
TTTAGTGTGTTGTGTATATATTTTACAACTGGGGGCATGGGGAGGGTAAT
GCCAAGGCGCACTCTAGTGCTTTTTAAACTAAAGACGTCATGTAAGTGCC
TGTGTTTTTGCTGACTGTATGTGGTATGTTTATCAATAAATGCCTATTGT
GTTGTGGCCTTGCGAAAGGCACTTTACAGCTTCGGTTAGGGACGTTTCTT
GGATGAAACGTAAATCTGGAGGTCCCGTGTTTGAGGAGAGCCACACCTCG
AGCGCGTATAGAAGACCCCAACACGCTCGATCGAAAACAGCAGGGGTCCT
TCCCGGTGTGAGTGGTTCAAAACATTCAGTCCTATGGCCGCAACTATGGC
AATTATTGTCGTATTGAGGTGACCTGAGTCAACTCAAATGGCAGTCGCTC
CAGACCCTTGCGATCTAGCCCCGCCAATTATAGACTCGTTGCAATTAATT
CAGCCCCTTAGAAGAGAGAGAGAGAGCGGTCGGCCACCTAACAACAACAA
CAACAACAACAATGACAACGATGACAACAATAACAATAACATTTCTATCC
TTTTCAGACATTTGGGAAAGAGATGCCATTATGGAGTATAAACCACAAGT
CCTGCCCAAGCTAAGTAAGTGAATGATTCCTTTTTTATTCATTTTTATTA
AATCAACAATAAAGTTGAACCATCCATTGGAAAATATCAACATAAAAAAA
TAAAAATTCAGAGCTTAATCTAACAAAATGCAAATTAAAGCTTTCTTTCC
CCTAAGGCACGATGTGTGGATGGTAGGCATTTTCTGTCACGGAATATCAC
TTTTATGAACGGACAGTCTTTCGCTTGATTTTGTATGCATACTGAAAAAA
AACCCCACACAAAACAGATCTACTTGTAAGGTCGCCAACGGGTGTTGCTT
TGAACTTATATAACCAATTTGTTGTAATACATAATTTCTTTTTTACCATA
TCTCGACACAAATTTGTATTTGTTTAAGCTTATTTTGTTATGACTTATGC
TTTTGCGATGCTAATTTTTAGTTTGTGTATTGTGTATACTTGAGTGTGTC
ATCATTATGTAACTGTCTCCATATCTACCTCGATTATGGTTCATAATTCT
TGCTTGAAGGAAACCCAAACAATATCAGGGCCCGAAAATAGGATTTTGAA
AGTCAATTTATTCAGTCATTTCTACACATGATTAGTTCAAACAACACTAT
CACAATGTATTGCGACATTCATGATGCAAAAGATATGACGTCGATGTGAG
ACCTCACTGAAAATCTTCGTGGGTTTTTTTGTAGGCTCGCGAAACTAAGG
GGATCATCGTACGGCTCGTTTTTGCGCGGTTTTAAAATGCTCAAAGTGTG
AAGTTATTAAGCAAATGCGCTTAACAGTGTTAGTAAATGTCACTGCGATG
AAGATTTCAGCCTTTTTTCATTTCCATATTTGGGCCCTAATACTGCTTTG
GGTGCCTTTAAAACCTAGTGAACCAGAAATTTCCAGTCACTTTTGAAATA
AGTTGTAAAAGTTAAAGTAGTGAATGCAACCTCAGACGTCTGACCGTTTC
CTAAAAATATTCCGTTACTTAAGTAACTGTTACCTGGCGTGTCTCTACAT
TTTATGAAAAATATTTCTTTTACGATACATGTACTAACGTTACGTGATGC
AGGGATTGCGTTCCATTACCTTTTACGTTAGAAACACGAACGTAATGGCC
AACTGTGCTTTCCCTTCTTGACTATTGGAGCCCCCCCCCAAAAAGAAAAT
AGAGAAAAGTGGGGTGGTAGTTTTCGAGATGGTGAAAATTGTCCGAAAAC
AAGCAGCATTTTGCCGAATCTTAAAAAAAAAACACCTTAATTCAAAAATT
AGCGGTGCTGAGATTATAACAATATGGTGAAGCACCATTTTCGCATTACT
TAAAGAGAGCTCAGGAACGGACGATTTTGTGGTTCAGATGTACATGACGT
GACATTCAACTGACCAACACACAGGTAAACACACCTGTCCTTGGTGCTGA
ACACCATCCACACACCGATAAACACACCTGTCCTTGGTGCTGAACACGTT
CCACACACAAAAACATCTGTAATGGATGTTGAACACCATTCACACACAGG
TAACCACGCCTGTCCTTGGTGCTGAACACCATCCACACAGATTTAAATAC
GCCTCTCCCTGGTGCTGACCACCATCCACACACATGTAAACACAGCTGTC
CTTGGTATTAAACACCATTCCCACACCAACACTGCCCTTGGTGCTTGGTA
CTGAACACCATTAACACACAAACACACCTGTCCTTGGTGCTGAACACCAT
TCACACACAAACAGACCTGTCCTTAGTGCTGACCACCATCCGCACACATG
TAAACACAGCTGTCCTTGGTATTAAACACCATCCCCACACCAACACTGTC
CTAGGTGCCTGGTGCTGAACACCATTAACACACAAACACACCTGGTCTTA
GTGCTGAACACCATTCACACACAAACAGACGTGTCCCTGGTGTTCATTAT
CTCCTACACACACCTACCTGTCCCTGGTGCTGAATACATCCAGTCCTCTT
GCAATTTATTTTCTTGTAAGAGAAAATTAATGCATGGTAAAATAACCACT
TTGTGCCCCCTTTTTTAAAATTCTGATCGCGTACACCAACGTTTTTTATT
GATTTTATATTCGTATCATTATATCAAAATTGTATCTACTTTGATGGTGG
ACATCCCACTGACCAAAGAAGTCCTCCCTTGTTGTGTCCCTAGCTTGCCG
CCCAGGATACAGCCTTCATAAGGACATGTGCTACAAGACTTTCCCTACGC
CGTTGAACTGGGTGAGGGCTTACACTGCGTGTTTGGGTGAATGCGGCCAG
CTCGCCGAACCTCGAACAAAGGACATCGACGAATTCCTCATCTCGCTGAA
AAACGCTGCCGACCCCCAAAACAACTTCTGGTTTGGTCTGAGACGCCATT
ATACCAAGAGGGAGCAGTTTATTTGGTCAACGGATCTGGATGACATAATA
GACATGAACACAAGTTATACCAACTGGGCCCCCGGACAGCCCGACGATGT
GTATGGTTATGAGGATTGTGTGTTTTACTTCGCCAAGGACTCGAATGTTT
CGAATGATACATGGAACAATGCTTCATGTTTTACCAGTCTACCATACCTG
TGCTCAACGAAGCCTTTGGAAATACAGTAAACAGGCTGTGTAATGCAATG
GTTACATGTCCAAATGAGACCGGACTGTTTGTTAAAACAAAAAATGAAAG
TGTACGTAAAAAACATATACACATGTTATACTCACGACTAGGCCAGGCAT
TTTTACGTTTTTTGTGAGTTTTGTAGTCTTTCATATCACACTTTTCGTTC
CCGTAAAGTTTAGTTTGGAAATGCGACCCTAGCATAAGAAGGATGGTTTT
CCAAATTCTACATTTTTGTCCTTCATTGTTTTTCCAGGAATTGGTATTGT
TATTTCCATTAGTCACATCAGAATATTTACTTCATTATGATTTGTGGTAC
AATATTTCCACCAAAAAATCCATGATTCTGTTAGAAAGCAT Coding sequence (CDS) from alignment at Sc0000017:990938..994678- >transcript:BL87252_cuf1 ID=transcript:BL87252_cuf1|Name=transcript:BL87252_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1674bp|location=Sequence derived from alignment at Sc0000017:990938..994678- (Branchiostoma lanceolatum)
AACATTGATGTGGGTATTTCACCGACTTCTGAGGACAACCCACGCCAAAC
GTCTGCTCAAAATGACATTTGGGAAAGAGATGCCATTATGGAGTATAAAC
CACAAGTCCTGCCCAAGCTAACTTGCCGCCCAGGATACAGCCTTCATAAG
GACATGTGCTACAAGACTTTCCCTACGCCGTTGAACTGGGTGAGGGCTTA
CACTGCGTGTTTGGGTGAATGCGGCCAGCTCGCCGAACCTCGAACAAAGG
ACATCGACGAATTCCTCATCTCGCTGAAAAACGCTGCCGACCCCCAAAAC
AACTTCTGGTTTGGTCTGAGACGCCATTATACCAAGAGGGAGCAGTTTAT
TTGGTCAACGGATCTGGATGACATAATAGACATGAACACAAGTTATACCA
ACTGGGCCCCCGGACAGCCCGACGATGTGTATGGTTATGAGGATTGTGTG
TTTTACTTCGCCAAGGACTCGAATGTTTCGAATGATACATGGAACAATGC
TTCATGTTTTACCAGTCTACCATACCTGTGCTCAACGAAGCCTTTGGAAA
TACAGTAAAACATTGATGTGGGTATTTCACCGACTTCTGAGGACAACCCA
CGCCAAACGTCTGCTCAAAATGACATTTGGGAAAGAGATGCCATTATGGA
GTATAAACCACAAGTCCTGCCCAAGCTAACTTGCCGCCCAGGATACAGCC
TTCATAAGGACATGTGCTACAAGACTTTCCCTACGCCGTTGAACTGGGTG
AGGGCTTACACTGCGTGTTTGGGTGAATGCGGCCAGCTCGCCGAACCTCG
AACAAAGGACATCGACGAATTCCTCATCTCGCTGAAAAACGCTGCCGACC
CCCAAAACAACTTCTGGTTTGGTCTGAGACGCCATTATACCAAGAGGGAG
CAGTTTATTTGGTCAACGGATCTGGATGACATAATAGACATGAACACAAG
TTATACCAACTGGGCCCCCGGACAGCCCGACGATGTGTATGGTTATGAGG
ATTGTGTGTTTTACTTCGCCAAGGACTCGAATGTTTCGAATGATACATGG
AACAATGCTTCATGTTTTACCAGTCTACCATACCTGTGCTCAACGAAGCC
TTTGGAAATACAGTAAAACATTGATGTGGGTATTTCACCGACTTCTGAGG
ACAACCCACGCCAAACGTCTGCTCAAAATGACATTTGGGAAAGAGATGCC
ATTATGGAGTATAAACCACAAGTCCTGCCCAAGCTAACTTGCCGCCCAGG
ATACAGCCTTCATAAGGACATGTGCTACAAGACTTTCCCTACGCCGTTGA
ACTGGGTGAGGGCTTACACTGCGTGTTTGGGTGAATGCGGCCAGCTCGCC
GAACCTCGAACAAAGGACATCGACGAATTCCTCATCTCGCTGAAAAACGC
TGCCGACCCCCAAAACAACTTCTGGTTTGGTCTGAGACGCCATTATACCA
AGAGGGAGCAGTTTATTTGGTCAACGGATCTGGATGACATAATAGACATG
AACACAAGTTATACCAACTGGGCCCCCGGACAGCCCGACGATGTGTATGG
TTATGAGGATTGTGTGTTTTACTTCGCCAAGGACTCGAATGTTTCGAATG
ATACATGGAACAATGCTTCATGTTTTACCAGTCTACCATACCTGTGCTCA
ACGAAGCCTTTGGAAATACAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000017 | genome | Sc0000017:990938..994678 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87252_cuf1 |
| Biotype | protein_coding |
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