transcript:BL87308_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87308_cuf0
Unique Nametranscript:BL87308_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87308_cuf0

>transcript:BL87308_cuf0-protein ID=transcript:BL87308_cuf0-protein|Name=transcript:BL87308_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=109bp
LLVWLITALKLLLQAGDIEQNPGPTLRETDTDGTEEQSLKTRKNDDGLVE
LGLSGRNMSSVPNQVFQQNDIQVFNLQRNNIKVIPVDIGMLFELKHLDIS
CNKFSHLPD
Run BLAST on NCBI

mRNA from alignment at Sc0000100:85876..86426-

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87308_cuf0 ID=transcript:BL87308_cuf0|Name=transcript:BL87308_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=551bp|location=Sequence derived from alignment at Sc0000100:85876..86426- (Branchiostoma lanceolatum)
CTTCTGGTCTGGCTCATCACGGCACTGAAACTTCTTCTACAGGCAGGAGA
CATTGAGCAAAATCCTGGCCCTACATTAAGGTTTGTAATTGATATTATGA
TTACAACTAACGTTATGATGTTACCCATAAGGAGATAAGGTGCACATCGT
AGTAAAACCGTTGAATATGAAATTGTTGGGGTGCAAAAATATTCTGCCAA
ATGCTTACATGATGGATCCAATTTGCCAAATACAATGGATGCTCTACAAG
TTTTCAGTACTGTTGGAATTGGATTCTGATATCTTCTCTCCTTGAACCTG
CAGAGAAACAGACACAGATGGGACAGAGGAGCAAAGTCTGAAGACCAGAA
AAAATGATGATGGTCTTGTTGAGCTAGGCCTATCTGGGAGGAATATGTCA
AGTGTGCCAAACCAGGTATTCCAGCAAAATGACATACAGGTTTTCAATCT
CCAACGTAACAACATTAAAGTCATACCCGTGGACATAGGTATGTTGTTTG
AGCTTAAACATTTGGACATCAGTTGCAACAAATTTTCCCACCTACCTGAC
T

Coding sequence (CDS) from alignment at Sc0000100:85876..86426-

>transcript:BL87308_cuf0 ID=transcript:BL87308_cuf0|Name=transcript:BL87308_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=654bp|location=Sequence derived from alignment at Sc0000100:85876..86426- (Branchiostoma lanceolatum)
CTTCTGGTCTGGCTCATCACGGCACTGAAACTTCTTCTACAGGCAGGAGA
CATTGAGCAAAATCCTGGCCCTACATTAAGAGAAACAGACACAGATGGGA
CAGAGGAGCAAAGTCTGAAGACCAGAAAAAATGATGATGGTCTTGTTGAG
CTAGGCCTATCTGGGAGGAATATGTCAAGTGTGCCAAACCAGGTATTCCA
GCAAAATGACATACAGGTTTTCAATCTCCAACGTAACAACATTAAAGTCA
TACCCGTGGACATAGGTATGTTGTTTGAGCTTAAACATTTGGACATCAGT
TGCAACAAATTTTCCCACCTACCTGACCTTCTGGTCTGGCTCATCACGGC
ACTGAAACTTCTTCTACAGGCAGGAGACATTGAGCAAAATCCTGGCCCTA
CATTAAGAGAAACAGACACAGATGGGACAGAGGAGCAAAGTCTGAAGACC
AGAAAAAATGATGATGGTCTTGTTGAGCTAGGCCTATCTGGGAGGAATAT
GTCAAGTGTGCCAAACCAGGTATTCCAGCAAAATGACATACAGGTTTTCA
ATCTCCAACGTAACAACATTAAAGTCATACCCGTGGACATAGGTATGTTG
TTTGAGCTTAAACATTTGGACATCAGTTGCAACAAATTTTCCCACCTACC
TGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87308gene:BL87308Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87308_cuf0-E1BL87308_cuf0-E1-1564476830-300358Branchiostoma lanceolatumexon
BL87308_cuf0-E2BL87308_cuf0-E2-1564476830-300356Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87308_cuf0transcript:BL87308_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000100genomeSc0000100:85876..86426 -
Properties
Property NameValue
Transcript idBL87308_cuf0
Biotypeprotein_coding