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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87330_cuf2 >transcript:BL87330_cuf2-protein ID=transcript:BL87330_cuf2-protein|Name=transcript:BL87330_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
MHNNSEVTIYEDPNPNSVRSNRPILECIGDENDEGTVAICVGPIESQRLL
MKDKVMRVHMSDGTQRAHYLTFFNSMMDEKWDRAHGGLAGAGSKYLCTLC
EAVREEALEKAGSYEITRTLKKVEVTASKIKYESQEKDTFGEKGFPLLTT
EPWGRGIDATHADINLGNFFKSPIVREMAQVYSWAKTAGVKKQIADAESK
LDKHLKESLGSNPTLMMAGNYAREMFKTEHAEKLVALVKKPERRSALTEV
LAKFRPLRKVY Run BLAST on NCBI mRNA from alignment at Sc0000084:211433..213664+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87330_cuf2 ID=transcript:BL87330_cuf2|Name=transcript:BL87330_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2232bp|location=Sequence derived from alignment at Sc0000084:211433..213664+ (Branchiostoma lanceolatum)
CTGAGTTTGACAGTATGGAAGTACGTAGATTTGATGATGAGGCTGTAGCT
TCTACCTTTATTTGTGCTGTATGCCGAGGAGTGCCATGTAAAAGCCCTGT
GATTGTCAGTACCTGCCGGCACATCTATTGTGGTAATTGTATTGAGTTTT
GGCTCAAAAAGGCTGGTGTCTGTCCATCGTGTCGTGGTGTGTGATATAAA
CGAAAACTTTTTGACGGGTCAATTCAGAGGTCGAAAGTGGAGCTGCCACT
CACTGAGTTTGACAGTATGGAAGTACGTAGATTTGATGATGAGGCTGTAG
CTTCTACCTTTATTTGTGCTGTATGCCGAGGAGTGCCATGTAAAAGCCCT
GTGATTGTCAGTACCTGCCGGCACATCTATTGTGGTAATTGTATTGAGTT
TTGGCTCAAAAAGGCTGGTGTCTGTCCATCGTGGTAATTGTATTGAGTTT
TGGCTCAAAAAGGCTGGTGTCTGTCATCAGTGGTATGACATCCCGTGAGG
ATGTCATACCACTGACTGGCCCTTTACTTAATGTGTATGATACACTTAAG
GTAAGATGTAAATATTCTGCTAATGGTTGTGAAGCAATTGAACCTCTTGA
ACGCATTGACCACATGTTGTAAAGAAATGTGTAAAGAAAAGGGTAACGCC
TGAAAGTTCAAGACGCAAGCGCTTATGTAAAGCACGGCTTTTTGATGTTA
CTAGGCACCATGTCAAGCAAAAGAGATTAAAACCCTTGATCGAACACATT
GACGAATATTGCCAAGAAAATTATGAGAACAAAGAAGATGTGCTGTTTTT
CTTGTTGAGAAGTCATTTGTGTGATAAAGGAAATAGACCTATGGCAGCTC
AGATAGATGCCTAATGGCATAGGAAGGGTTCGCCAGGTATGACACCAGAA
GAGTGTTTAGGAATGAGGTTAGATCTGCTCATGACAAAAAATCAATATAT
CCGTGAATATAACATCTTGAAAGAAAAGGGTCTCTCCACATTGTGTCCGC
CTGAGCAACTTGATGCAATAGAAAAACCTTAATGCCTGGTGTGACGAGGT
ATTCTATTGAGGGTACAAACTACTCTGAACACTACTTTCATTCACCTGTT
AAGATGACGGGAGATCTAGACGTGCCTAGTGGAGAGTCTTTAGAATCGAA
AGTGTAACTGGTGACTTTCATGAACATGTACCTGATTTTCCTTGCCCCAA
CACTAAAGGTGTGAGATTTCCGTATGCACATGCAGTTGCAAAGACTCTAG
AAGAATTGGATGACGAGATTGTTAACGGAATAACAAAGCTTGGTCGTGAT
CCTAATGATCCCACTTTAGTTATTCATACAATCTGTAAGGATGGGGCGGA
CGGATTGGGGGATGTGTCCATACACAAAGAGAAAGCAGACCATTTATTGC
CCGACAAGGCTCTTAGATTCTCCTTCTGTGTCCTTAAATGTTCAATCATG
CATAATAATTCAGAGGTTACCATATATGAAGACCCAAATCCCAATTCCGT
CCGCTCTAACCGTCCTATCCTGGAGTGTATAGGTGATGAGAATGATGAGG
GCACTGTTGCCATATGTGTGGGACCAATTGAATCACAACGTCTGCTTATG
AAAGACAAAGTAATGAGGGTTCACATGAGTGATGGAACACAACGTGCCCA
CTATTTAACATTTTTCAACAGTATGATGGATGAGAAGTGGGACAGAGCAC
ACGGAGGTCTTGCAGGGGCTGGCTCTAAGTACTTATGCACATTGTGCGAG
GCAGTGCGAGAAGAAGCCCTGGAGAAAGCAGGGTCCTATGAAATAACAAG
AACGCTAAAAAAGGTTGAAGTAACAGCAAGTAAGATAAAGTATGAGTCTC
AAGAGAAAGACACATTTGGTGAAAAGGGATTCCCACTGCTGACCACAGAG
CCATGGGGGCGGGGTATTGACGCCACCCATGCGGACATAAACCTGGGCAA
CTTCTTTAAATCCCCGATTGTAAGGGAAATGGCTCAAGTATATAGCTGGG
CTAAGACAGCAGGTGTGAAAAAACAAATTGCTGATGCTGAGTCTAAACTC
GATAAACATTTAAAAGAATCTCTCGGCTCGAATCCAACTTTAATGATGGC
TGGCAATTATGCCAGGGAGATGTTCAAAACTGAACATGCTGAAAAGTTGG
TGGCCCTTGTCAAAAAGCCTGAAAGGAGAAGTGCGTTGACAGAAGTTTTG
GCCAAGTTTCGCCCCCTCAGAAAGGTGTATCG Coding sequence (CDS) from alignment at Sc0000084:211433..213664+ >transcript:BL87330_cuf2 ID=transcript:BL87330_cuf2|Name=transcript:BL87330_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=783bp|location=Sequence derived from alignment at Sc0000084:211433..213664+ (Branchiostoma lanceolatum)
ATGCATAATAATTCAGAGGTTACCATATATGAAGACCCAAATCCCAATTC
CGTCCGCTCTAACCGTCCTATCCTGGAGTGTATAGGTGATGAGAATGATG
AGGGCACTGTTGCCATATGTGTGGGACCAATTGAATCACAACGTCTGCTT
ATGAAAGACAAAGTAATGAGGGTTCACATGAGTGATGGAACACAACGTGC
CCACTATTTAACATTTTTCAACAGTATGATGGATGAGAAGTGGGACAGAG
CACACGGAGGTCTTGCAGGGGCTGGCTCTAAGTACTTATGCACATTGTGC
GAGGCAGTGCGAGAAGAAGCCCTGGAGAAAGCAGGGTCCTATGAAATAAC
AAGAACGCTAAAAAAGGTTGAAGTAACAGCAAGTAAGATAAAGTATGAGT
CTCAAGAGAAAGACACATTTGGTGAAAAGGGATTCCCACTGCTGACCACA
GAGCCATGGGGGCGGGGTATTGACGCCACCCATGCGGACATAAACCTGGG
CAACTTCTTTAAATCCCCGATTGTAAGGGAAATGGCTCAAGTATATAGCT
GGGCTAAGACAGCAGGTGTGAAAAAACAAATTGCTGATGCTGAGTCTAAA
CTCGATAAACATTTAAAAGAATCTCTCGGCTCGAATCCAACTTTAATGAT
GGCTGGCAATTATGCCAGGGAGATGTTCAAAACTGAACATGCTGAAAAGT
TGGTGGCCCTTGTCAAAAAGCCTGAAAGGAGAAGTGCGTTGACAGAAGTT
TTGGCCAAGTTTCGCCCCCTCAGAAAGGTGTAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000084 | genome | Sc0000084:211433..213664 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87330_cuf2 |
| Biotype | protein_coding |
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