|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88485_cuf2 >transcript:BL88485_cuf2-protein ID=transcript:BL88485_cuf2-protein|Name=transcript:BL88485_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=343bp
MSFHVLWSCNAHFLYVSFMYFSSDRRQQCIPCVCFIPIKQCEFSYLLTVG
MYFVFSSSKQLLFINPREGKYISCNPADLPSSSGITVTSDNNIYIVDARE
LEHELQLSLFKYNHGKNLWEHECKSSVSKIQDNCYEEHLLEVDGILYYTA
VDPEEDRPLLELRKYNLQTKKWQECSHLQVSKTLYQSATLSCGSHIYFLT
STEMHCYDPSEDSWCRRTPPMNITDVCTAVAMGTEIFCTDFDFTQTMVYD
TESDSWQKLQGWSNPRNLEMDFRPNFFLLENQLHIFFGLTVKQGPSPDIF
IYVYDRSADTWRDLNASLPDKTRYTHGCQFPVARMYLPYLNSA Run BLAST on NCBI mRNA from alignment at Sc0000064:868560..871031+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88485_cuf2 ID=transcript:BL88485_cuf2|Name=transcript:BL88485_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2472bp|location=Sequence derived from alignment at Sc0000064:868560..871031+ (Branchiostoma lanceolatum)
CCTCACATCCGCTTCAACCTGCTGACCTCAGACGACACGGCAGCCATCTT
AAAACACTCCTTGATCAGGGAGGATCCTGGGAGATATGAGATTATCAGGA
ATGTGGTACAGGAAAGGGAACCCATCCTAAAGCCGAGGCTTGGGATGACC
ATGGAAATGGCTTTGTTGTATGATATATACCAGGGGTCAGTATGTACTTT
TTCTCCCTTTTATCTTCTAGTTCAGAAACACTTCTGGCACTATGTCATTC
CATGTTTTGTGGTCCTGCAATGCACATTTCCTATATGTGTCATTCATGTA
CTTTTCATCTGATAGAAGACAACAGTGCATACCATGCGTTTGCTTCATCC
CCATAAAGCAGTGTGAGTTTTCATATTTATTGACAGTTGGGATGTATTTT
GTCTTCTCCAGTTCTAAACAACTCCTGTTCATCAACCCACGAGAAGGGAA
GTACATCAGCTGCAATCCTGCAGACCTTCCTTCATCTTCAGGCATAACGG
TCACAAGTGATAACAACATTTATATCGTGGATGCCAGAGAATTAGAGCAT
GAGCTTCAGTTGTCCCTGTTTAAGTACAACCATGGGAAGAATTTATGGGA
ACATGAATGTAAGTCCTCAGTGTCTAAGATACAGGATAATTGCTATGAGG
AGCACCTTTTGGAAGTTGATGGGATTTTGTACTACACTGCTGTCGATCCT
GAAGAAGACCGTCCATTGCTGGAGCTGAGAAAGTACAACCTCCAGACAAA
AAAGTGGCAGGAGTGTTCACATCTTCAAGTTAGCAAAACTTTATACCAAA
GCGCAACATTGTCCTGTGGTTCACACATCTATTTCCTCACAAGCACAGAA
ATGCACTGCTACGACCCGAGTGAGGACAGTTGGTGCAGGCGGACCCCACC
AATGAACATTACTGACGTCTGCACTGCCGTTGCCATGGGAACAGAGATTT
TCTGCACAGATTTTGACTTCACTCAGACCATGGTGTACGATACAGAGTCA
GACAGCTGGCAGAAACTACAAGGCTGGTCGAACCCAAGAAACCTCGAGAT
GGATTTTCGACCCAATTTTTTCCTACTGGAGAACCAGCTGCACATATTTT
TCGGACTTACTGTCAAACAAGGGCCATCACCAGACATTTTCATATATGTG
TATGACAGGTCTGCTGATACCTGGAGAGACTTGAATGCCTCCCTGCCTGA
TAAGACACGGTATACGCATGGTTGCCAGTTCCCTGTGGCACGTATGTACC
TACCATATCTTAATAGTGCATAAAACTAGGGGTGGGTACCGGTACCGTGT
ACCGGTACAAAACCGGTATTTTCTTATGGACCGGTCCAAAAAAACCGGTC
CAGAAAAAATCAGTGGACCGGCCTATGGACCGATTAGAAAATTCACAGTA
CCAGGCTACTAGCAGGCGGTCACGCATAACCGGTCTAATACAAAATAAGC
ATATTTAACGAGTCGTGGTTTCATGTAGATGAGTCAACAGTCGGCGAGTG
CACATTAGTGTGCACCGAGAATAATCACTTCATTCTAATATACAATTTGA
ACATAATTTGTAGGACTCACAGAGACCTTAACTTGTGTCTCGCTCTCCAA
AATATGATGTACTGCGACACTACTTTAATCAGGTACAGGTACAGGTCCGG
ACCTGGACCTGACCCTCTGGACCTGGACCGTACCTGAATTTTCTGTACCG
GTACCCACCCCTACATAAAACACATTATTATGTTTATGTGCAGGATAATG
AGACACTTAGAGTACAGGGCAGGACTGCTTAAGGACATTTTGTTTAGTTT
TGCTTTTTGTGTGAACGGATAAACATTGTACTAGCTTTCATACTTTTTAG
GAGATTTTCAGAATTGGTGCCATTCTAGTTTGTTTACTGGAGCTTCCATA
GTCACCAAACTAGTCAACTATTGGGTTGGGGCATGGACGCCCCCGTGAAG
TAGCTATGGTGGCACACATGCAAAGTCATTATATTCTTTATAAACTATAA
AACTTTAACCATTATTGCTCATATAGTGCTACATGTATGTAAGACAAAGT
TTTTCATCGGTGTGATTAACAACAGACATTTGTTTATCAGTACATATATA
TCACTATACAGGCATGTTAATTGGTGTTAACTTTTGCTTACAAAGCAATT
TGCACATTAGATTAGAATCAACCCGTTTATGTACAGGTATTTTCGCATAC
AATGTATTTCCTTTCGTATCATTTGTAACCAATAAATATCTACTGATCAG
AAAAGAGTCATCGTTTTGCCCAGTATTCTGTTTGAAGGTCAATTGTTTTT
GAAGTTCATAAATGATATGTTGGGTATTTTTTCTTTACCCTTCAGAAACC
CTTTTAATGTGAATGAATCACATCATAGCCACATTTATCGCAAAACATGT
TTATTCAGCTGCAGTTTCCAACAAAGCTAATAGGGCATGACATAAGCACA
TGAAAAAAGACCAAGACTTTCC Coding sequence (CDS) from alignment at Sc0000064:868560..871031+ >transcript:BL88485_cuf2 ID=transcript:BL88485_cuf2|Name=transcript:BL88485_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1032bp|location=Sequence derived from alignment at Sc0000064:868560..871031+ (Branchiostoma lanceolatum)
ATGTCATTCCATGTTTTGTGGTCCTGCAATGCACATTTCCTATATGTGTC
ATTCATGTACTTTTCATCTGATAGAAGACAACAGTGCATACCATGCGTTT
GCTTCATCCCCATAAAGCAGTGTGAGTTTTCATATTTATTGACAGTTGGG
ATGTATTTTGTCTTCTCCAGTTCTAAACAACTCCTGTTCATCAACCCACG
AGAAGGGAAGTACATCAGCTGCAATCCTGCAGACCTTCCTTCATCTTCAG
GCATAACGGTCACAAGTGATAACAACATTTATATCGTGGATGCCAGAGAA
TTAGAGCATGAGCTTCAGTTGTCCCTGTTTAAGTACAACCATGGGAAGAA
TTTATGGGAACATGAATGTAAGTCCTCAGTGTCTAAGATACAGGATAATT
GCTATGAGGAGCACCTTTTGGAAGTTGATGGGATTTTGTACTACACTGCT
GTCGATCCTGAAGAAGACCGTCCATTGCTGGAGCTGAGAAAGTACAACCT
CCAGACAAAAAAGTGGCAGGAGTGTTCACATCTTCAAGTTAGCAAAACTT
TATACCAAAGCGCAACATTGTCCTGTGGTTCACACATCTATTTCCTCACA
AGCACAGAAATGCACTGCTACGACCCGAGTGAGGACAGTTGGTGCAGGCG
GACCCCACCAATGAACATTACTGACGTCTGCACTGCCGTTGCCATGGGAA
CAGAGATTTTCTGCACAGATTTTGACTTCACTCAGACCATGGTGTACGAT
ACAGAGTCAGACAGCTGGCAGAAACTACAAGGCTGGTCGAACCCAAGAAA
CCTCGAGATGGATTTTCGACCCAATTTTTTCCTACTGGAGAACCAGCTGC
ACATATTTTTCGGACTTACTGTCAAACAAGGGCCATCACCAGACATTTTC
ATATATGTGTATGACAGGTCTGCTGATACCTGGAGAGACTTGAATGCCTC
CCTGCCTGATAAGACACGGTATACGCATGGTTGCCAGTTCCCTGTGGCAC
GTATGTACCTACCATATCTTAATAGTGCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000064 | genome | Sc0000064:868560..871031 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88485_cuf2 |
| Biotype | protein_coding |
|
