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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88612_cuf0 >transcript:BL88612_cuf0-protein ID=transcript:BL88612_cuf0-protein|Name=transcript:BL88612_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=332bp
MSSRFQRIYCNNCGVRAQPIDNYCDFCGAQIRRREVLRGEVDCNPCMRET
NISNFIYYYNHRLTTTDRELLQQAQAVVRQYDNCKYILENAEFKVTGYLV
DIVFFSGDRTWIGSETGFRYVPPKMQHQVPPTRPIRDTSQLPTSTVQERL
PYMSQQARVKTPVYQQQETKPSPPSRPAPVVSTTRANQQQDSPLSPLNKE
VCCPYSIRHSNIANFIRDHKDNLSEKNRQLLQEALTLVTNESTWVWKNAQ
LTVHGTHFTQTMEVVFYSGDRTNQYVVHLNGVNRPAYVVEKRGWKLKARD
AVKTCWGWFKKAASAIAGALTGGLVRGAIGGS Run BLAST on NCBI mRNA from alignment at Sc0000157:676291..678797+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88612_cuf0 ID=transcript:BL88612_cuf0|Name=transcript:BL88612_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2507bp|location=Sequence derived from alignment at Sc0000157:676291..678797+ (Branchiostoma lanceolatum)
CACGTTTTTGACGCGTGATGTTTACAACTTTCGTACTGCCGACAGTGGCT
TTTAATCATGTGGTGTGTGCAGTTCCAGGTCGTCTCAATTGTGATTGGTG
GAGACTGAGGCAATAACCATGACCTCGTTAGAAAGTCCAGTGCGCTCATA
CATACGGACGACGTTCGCGTTTAGAGAAAGTTGGCTCAGAGAAAATCCGA
AGACAGACGTTGGCATATACCAGAATGTCCAGTCGATTTCAGAGTAGGTC
ATTGCCTTATCTTGTCTTGTTTGTAAACTATCCGAAAGTATTGGAAGATC
CCGGTTTGGTCTATACCCTTTAGAACAGCACATTTAACTGCAGCAGCAGA
AAACAATGGGCTACTACTACTACTACATTTAACTCAGGGCCAGTTGTAGG
TTCGTAAACTTCCAGGTACAACATCTGTGCATGGAAGTAGCAACATGGTG
TGTGGTTGCCGAAAAATGAACAGCCTATAATCTTAGCGAATTTTTTCTTA
ACTTGGTTACGGAACTGTACATCTTACTTTTCTTTCAGGAATATACTGCA
ACAACTGCGGTGTACGGGCCCAACCAATTGACAACTACTGTGACTTCTGT
GGTGCACAAATAAGGAGGAGGGAGGTTCTGGTGAGCATGTCTTCGACAAC
TTCTTTCACATTACAATTTTTCTACATTTACTACATGACATAACGAACTT
GTTATGATGTTCACTATATTTCGGTATTTGGGCTAACAAATGCGCACAGT
GCAGTAAAGTATATATAATACGAGCAAAGTGGTGGCTTCGCCATATAAAT
AGCTTGCTTGTGCTTACCGTTGTATTAGCGCTTGCATATTTGGACAAGGA
TATGCTATATACATTAGAAGAACAATGTGCAAGTGCACATACTGTAAACT
ATTATTCTTCCAAGTGTAATTGCCATTCATATTGAAGTATAACTACTGCA
ATGGAGCCCGTATTTCTTTTCGCAGAGGGGAGAAGTAGACTGCAATCCGT
GCATGCGGGAAACGAACATTTCAAACTTCATCTACTACTACAATCATCGC
CTTACTACTACAGACCGTGAACTGTTACAACAGGCCCAAGCTGTCGTCAG
GCAATATGACAATTGCAAATATATTTTGGAGAACGCGGAATTTAAAGTGA
CGGGCTATCTCGTGGATATAGTTTTCTTCTCTGGGGACAGGACATGGATT
GGGTCAGAAACAGGCTTTCGATACGTGCCTCCGAAGGTAAGTGCTAGATA
TTCATTTTTAGTTATGTTGTAGTAATACATTTTCAAAAGGTCTATAATCA
ATTCATTGTGCTCCTGAATGGAGAAAATGAGTTTTATTTGATCAACCATA
CAAACATGTGTTGCCGCCTACAATCTCACTTGTTTTTTCAGTCTTTCGTC
TGTACGTTACCAAATTTGTGACTATTTTTAACTTTTAGCCACCTCCACCT
TCTTTCATATTTTTTTTCATTCTTGAATGTGTAGACTGCCGAGCTGTCAA
AATACATTTGAGCGCAATGTAAAGTTACCATTGCGCGTTTCTGGAAATGT
TCTTGATTTATAAAGGCTATAATTAACAGGAATTCCTGGTCAGACTAGTT
ATGACCTTCTAAGGATGCGAAAAGCCCAGCTATAAGGAAATACGAATGGA
ATGTTTGAAATGTTTTCATAGTCATACATCCCTTAACAATACGATGTGTC
TATTGTTATCTCAGATGCAACACCAAGTACCACCAACAAGACCCATTCGT
GATACCAGTCAACTCCCTACGAGTACGGTGCAGGAAAGGTTGCCATACAT
GAGCCAACAAGCCCGTGTTAAAACCCCCGTGTACCAACAACAGGAAACAA
AACCGTCCCCTCCTTCCCGACCCGCCCCTGTTGTCAGCACAACCCGTGCG
AACCAGCAGCAAGACAGTCCGCTGTCTCCATTGAATAAGGTAAAACTGCA
ATTATGAAAAAGAGCATGCATGTATAGGCATTTATGGAAAAATGTGTAAG
CAACCATTAAACCTGTATTTACTTTAAGAAATCAAATAGTTTAAACTTCA
AATACGTTTGAACATCGATGCCGCAATTGCATGCCTATTCCTTCTTCCAG
GAAGTATGCTGCCCTTATTCCATACGTCACTCCAACATCGCAAACTTTAT
CCGCGATCACAAGGACAACCTGTCAGAAAAAAACCGTCAGCTACTGCAAG
AAGCCCTGACACTGGTCACCAATGAGTCAACCTGGGTTTGGAAAAACGCG
CAGCTGACTGTACACGGCACCCACTTCACCCAGACGATGGAGGTGGTGTT
CTACTCCGGCGACAGAACCAACCAGTACGTAGTGCACCTGAACGGAGTGA
ATCGCCCAGCCTATGTGGTGGAAAAAAGGGGATGGAAACTAAAGGCGCGC
GACGCCGTCAAGACCTGCTGGGGCTGGTTTAAAAAGGCGGCCAGCGCGAT
TGCTGGAGCCTTAACGGGTGGTTTGGTCAGGGGGGCTATTGGGGGATCGT
GAGTGTC Coding sequence (CDS) from alignment at Sc0000157:676291..678797+ >transcript:BL88612_cuf0 ID=transcript:BL88612_cuf0|Name=transcript:BL88612_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4995bp|location=Sequence derived from alignment at Sc0000157:676291..678797+ (Branchiostoma lanceolatum)
ATGTCCAGTCGATTTCAGAGAATATACTGCAACAACTGCGGTGTACGGGC
CCAACCAATTGACAACTACTGTGACTTCTGTGGTGCACAAATAAGGAGGA
GGGAGGTTCTGAGGGGAGAAGTAGACTGCAATCCGTGCATGCGGGAAACG
AACATTTCAAACTTCATCTACTACTACAATCATCGCCTTACTACTACAGA
CCGTGAACTGTTACAACAGGCCCAAGCTGTCGTCAGGCAATATGACAATT
GCAAATATATTTTGGAGAACGCGGAATTTAAAGTGACGGGCTATCTCGTG
GATATAGTTTTCTTCTCTGGGGACAGGACATGGATTGGGTCAGAAACAGG
CTTTCGATACGTGCCTCCGAAGATGCAACACCAAGTACCACCAACAAGAC
CCATTCGTGATACCAGTCAACTCCCTACGAGTACGGTGCAGGAAAGGTTG
CCATACATGAGCCAACAAGCCCGTGTTAAAACCCCCGTGTACCAACAACA
GGAAACAAAACCGTCCCCTCCTTCCCGACCCGCCCCTGTTGTCAGCACAA
CCCGTGCGAACCAGCAGCAAGACAGTCCGCTGTCTCCATTGAATAAGGAA
GTATGCTGCCCTTATTCCATACGTCACTCCAACATCGCAAACTTTATCCG
CGATCACAAGGACAACCTGTCAGAAAAAAACCGTCAGCTACTGCAAGAAG
CCCTGACACTGGTCACCAATGAGTCAACCTGGGTTTGGAAAAACGCGCAG
CTGACTGTACACGGCACCCACTTCACCCAGACGATGGAGGTGGTGTTCTA
CTCCGGCGACAGAACCAACCAGTACGTAGTGCACCTGAACGGAGTGAATC
GCCCAGCCTATGTGGTGGAAAAAAGGGGATGGAAACTAAAGGCGCGCGAC
GCCGTCAAGACCTGCTGGGGCTGGTTTAAAAAGGCGGCCAGCGCGATTGC
TGGAGCCTTAACGGGTGGTTTGGTCAGGGGGGCTATTGGGGGATCGTGAA
TGTCCAGTCGATTTCAGAGAATATACTGCAACAACTGCGGTGTACGGGCC
CAACCAATTGACAACTACTGTGACTTCTGTGGTGCACAAATAAGGAGGAG
GGAGGTTCTGAGGGGAGAAGTAGACTGCAATCCGTGCATGCGGGAAACGA
ACATTTCAAACTTCATCTACTACTACAATCATCGCCTTACTACTACAGAC
CGTGAACTGTTACAACAGGCCCAAGCTGTCGTCAGGCAATATGACAATTG
CAAATATATTTTGGAGAACGCGGAATTTAAAGTGACGGGCTATCTCGTGG
ATATAGTTTTCTTCTCTGGGGACAGGACATGGATTGGGTCAGAAACAGGC
TTTCGATACGTGCCTCCGAAGATGCAACACCAAGTACCACCAACAAGACC
CATTCGTGATACCAGTCAACTCCCTACGAGTACGGTGCAGGAAAGGTTGC
CATACATGAGCCAACAAGCCCGTGTTAAAACCCCCGTGTACCAACAACAG
GAAACAAAACCGTCCCCTCCTTCCCGACCCGCCCCTGTTGTCAGCACAAC
CCGTGCGAACCAGCAGCAAGACAGTCCGCTGTCTCCATTGAATAAGGAAG
TATGCTGCCCTTATTCCATACGTCACTCCAACATCGCAAACTTTATCCGC
GATCACAAGGACAACCTGTCAGAAAAAAACCGTCAGCTACTGCAAGAAGC
CCTGACACTGGTCACCAATGAGTCAACCTGGGTTTGGAAAAACGCGCAGC
TGACTGTACACGGCACCCACTTCACCCAGACGATGGAGGTGGTGTTCTAC
TCCGGCGACAGAACCAACCAGTACGTAGTGCACCTGAACGGAGTGAATCG
CCCAGCCTATGTGGTGGAAAAAAGGGGATGGAAACTAAAGGCGCGCGACG
CCGTCAAGACCTGCTGGGGCTGGTTTAAAAAGGCGGCCAGCGCGATTGCT
GGAGCCTTAACGGGTGGTTTGGTCAGGGGGGCTATTGGGGGATCGTGAAT
GTCCAGTCGATTTCAGAGAATATACTGCAACAACTGCGGTGTACGGGCCC
AACCAATTGACAACTACTGTGACTTCTGTGGTGCACAAATAAGGAGGAGG
GAGGTTCTGAGGGGAGAAGTAGACTGCAATCCGTGCATGCGGGAAACGAA
CATTTCAAACTTCATCTACTACTACAATCATCGCCTTACTACTACAGACC
GTGAACTGTTACAACAGGCCCAAGCTGTCGTCAGGCAATATGACAATTGC
AAATATATTTTGGAGAACGCGGAATTTAAAGTGACGGGCTATCTCGTGGA
TATAGTTTTCTTCTCTGGGGACAGGACATGGATTGGGTCAGAAACAGGCT
TTCGATACGTGCCTCCGAAGATGCAACACCAAGTACCACCAACAAGACCC
ATTCGTGATACCAGTCAACTCCCTACGAGTACGGTGCAGGAAAGGTTGCC
ATACATGAGCCAACAAGCCCGTGTTAAAACCCCCGTGTACCAACAACAGG
AAACAAAACCGTCCCCTCCTTCCCGACCCGCCCCTGTTGTCAGCACAACC
CGTGCGAACCAGCAGCAAGACAGTCCGCTGTCTCCATTGAATAAGGAAGT
ATGCTGCCCTTATTCCATACGTCACTCCAACATCGCAAACTTTATCCGCG
ATCACAAGGACAACCTGTCAGAAAAAAACCGTCAGCTACTGCAAGAAGCC
CTGACACTGGTCACCAATGAGTCAACCTGGGTTTGGAAAAACGCGCAGCT
GACTGTACACGGCACCCACTTCACCCAGACGATGGAGGTGGTGTTCTACT
CCGGCGACAGAACCAACCAGTACGTAGTGCACCTGAACGGAGTGAATCGC
CCAGCCTATGTGGTGGAAAAAAGGGGATGGAAACTAAAGGCGCGCGACGC
CGTCAAGACCTGCTGGGGCTGGTTTAAAAAGGCGGCCAGCGCGATTGCTG
GAGCCTTAACGGGTGGTTTGGTCAGGGGGGCTATTGGGGGATCGTGAATG
TCCAGTCGATTTCAGAGAATATACTGCAACAACTGCGGTGTACGGGCCCA
ACCAATTGACAACTACTGTGACTTCTGTGGTGCACAAATAAGGAGGAGGG
AGGTTCTGAGGGGAGAAGTAGACTGCAATCCGTGCATGCGGGAAACGAAC
ATTTCAAACTTCATCTACTACTACAATCATCGCCTTACTACTACAGACCG
TGAACTGTTACAACAGGCCCAAGCTGTCGTCAGGCAATATGACAATTGCA
AATATATTTTGGAGAACGCGGAATTTAAAGTGACGGGCTATCTCGTGGAT
ATAGTTTTCTTCTCTGGGGACAGGACATGGATTGGGTCAGAAACAGGCTT
TCGATACGTGCCTCCGAAGATGCAACACCAAGTACCACCAACAAGACCCA
TTCGTGATACCAGTCAACTCCCTACGAGTACGGTGCAGGAAAGGTTGCCA
TACATGAGCCAACAAGCCCGTGTTAAAACCCCCGTGTACCAACAACAGGA
AACAAAACCGTCCCCTCCTTCCCGACCCGCCCCTGTTGTCAGCACAACCC
GTGCGAACCAGCAGCAAGACAGTCCGCTGTCTCCATTGAATAAGGAAGTA
TGCTGCCCTTATTCCATACGTCACTCCAACATCGCAAACTTTATCCGCGA
TCACAAGGACAACCTGTCAGAAAAAAACCGTCAGCTACTGCAAGAAGCCC
TGACACTGGTCACCAATGAGTCAACCTGGGTTTGGAAAAACGCGCAGCTG
ACTGTACACGGCACCCACTTCACCCAGACGATGGAGGTGGTGTTCTACTC
CGGCGACAGAACCAACCAGTACGTAGTGCACCTGAACGGAGTGAATCGCC
CAGCCTATGTGGTGGAAAAAAGGGGATGGAAACTAAAGGCGCGCGACGCC
GTCAAGACCTGCTGGGGCTGGTTTAAAAAGGCGGCCAGCGCGATTGCTGG
AGCCTTAACGGGTGGTTTGGTCAGGGGGGCTATTGGGGGATCGTGAATGT
CCAGTCGATTTCAGAGAATATACTGCAACAACTGCGGTGTACGGGCCCAA
CCAATTGACAACTACTGTGACTTCTGTGGTGCACAAATAAGGAGGAGGGA
GGTTCTGAGGGGAGAAGTAGACTGCAATCCGTGCATGCGGGAAACGAACA
TTTCAAACTTCATCTACTACTACAATCATCGCCTTACTACTACAGACCGT
GAACTGTTACAACAGGCCCAAGCTGTCGTCAGGCAATATGACAATTGCAA
ATATATTTTGGAGAACGCGGAATTTAAAGTGACGGGCTATCTCGTGGATA
TAGTTTTCTTCTCTGGGGACAGGACATGGATTGGGTCAGAAACAGGCTTT
CGATACGTGCCTCCGAAGATGCAACACCAAGTACCACCAACAAGACCCAT
TCGTGATACCAGTCAACTCCCTACGAGTACGGTGCAGGAAAGGTTGCCAT
ACATGAGCCAACAAGCCCGTGTTAAAACCCCCGTGTACCAACAACAGGAA
ACAAAACCGTCCCCTCCTTCCCGACCCGCCCCTGTTGTCAGCACAACCCG
TGCGAACCAGCAGCAAGACAGTCCGCTGTCTCCATTGAATAAGGAAGTAT
GCTGCCCTTATTCCATACGTCACTCCAACATCGCAAACTTTATCCGCGAT
CACAAGGACAACCTGTCAGAAAAAAACCGTCAGCTACTGCAAGAAGCCCT
GACACTGGTCACCAATGAGTCAACCTGGGTTTGGAAAAACGCGCAGCTGA
CTGTACACGGCACCCACTTCACCCAGACGATGGAGGTGGTGTTCTACTCC
GGCGACAGAACCAACCAGTACGTAGTGCACCTGAACGGAGTGAATCGCCC
AGCCTATGTGGTGGAAAAAAGGGGATGGAAACTAAAGGCGCGCGACGCCG
TCAAGACCTGCTGGGGCTGGTTTAAAAAGGCGGCCAGCGCGATTGCTGGA
GCCTTAACGGGTGGTTTGGTCAGGGGGGCTATTGGGGGATCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000157 | genome | Sc0000157:676291..678797 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88612_cuf0 |
| Biotype | protein_coding |
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