|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL89852_cuf2 >transcript:BL89852_cuf2-protein ID=transcript:BL89852_cuf2-protein|Name=transcript:BL89852_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=246bp
MTTAEVGFLTPLEKRNDHGRDHNYTYTCSECGKMFVNRNGLKRHFRTHTG
EKPYTCEQCNRQFSQLGHLKTHILTHTGEKPYRCELCSRMFITMSNLKTH
IRNHTGEKPFRCEECKRCFSNLTILKIHMRTHTTEKPYRCEKCEKRFSQL
VHLKDHMRIHTGEKPHMCKDCRMQFRHHSTLQSHRRTHTGQKPYKCQNCS
KTFRQSAHLRTHMRTHTWEKPYTCKTCIKQFTSLSNLKRHMYIHAC Run BLAST on NCBI mRNA from alignment at xfSc0002534:1..2186+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL89852_cuf2 ID=transcript:BL89852_cuf2|Name=transcript:BL89852_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2186bp|location=Sequence derived from alignment at xfSc0002534:1..2186+ (Branchiostoma lanceolatum)
GTGTGATTTATTTCGTGTGTGTTTCAGTGTTTAACCAAAAATGGATTAGA
AAAATCACCATGCCCTAAGAGAAGACTTATCACCTTTTTTCTTATTCAGG
CTATCAAAATACTTATATTGAGCTAATGCATTTTTTTTGGAAATATTTAT
CGATCTTTTTAACGTTAACAGACTTCACAAACTTGATTGAGTGTATTTTC
CGTGCTGTGCATTTGGCTCGATAAGAACAGGAATTTCTTCGAGAATGCCC
AACAGTAGACTTGTAGAAAGAAGTGCTTAAAATTAATCCTATATTACATT
GTCTGAAGCCTGTTTTTTCGACCAATTTGACATACCTCACACCAGTTTTT
GTTGAAATTGGTATCCATCATGACATGATAACATTTACAATAAGCGATTT
GCCGACAGAAATTCACGTTTCCCGTCGACTGAACGAATAATCACATAACC
CCTACCCCGACGCTAATTATTCAGCCCCAGTTTATCTTCTGACCCTTCCT
GCCTGTCCCCTGTTAGGTAAATCGTGGCTTGACCTTCAAGTGGTGCGGTC
ACATTTTTTGGAATAATGGCAGGCTTCCGGATTATTGTGTTGCAAACTCT
TAACTAAACAAGTCGCTACAAATGATAGTTACTATGAACGGTAGGTATGT
TTCATATTGCCATGTAAATTCCAAACAGTTGTTTGCAAAAACAGGTCTGT
ATTTTTGTTACTTGTTAATAGTGTTCAATCACAAAGTTTGCGAGATAAGA
TATTAATGTTGTCTGAAAATGAAATGGTTGGGACGACTGTCGTACGTCAC
CGCCTCTCTTTTCGTCGTGTAAATCAGGTTTTTATGATCCGGCACCAATT
AAATAAGCTAAGAATCCATGACTTCTGATTACCTCAATGAAATGGGGAGT
TATATAGTTTTGTCAGTGTGTTCTTATGTCTATGTAAGATATTTAGCAAC
TAAATATATGTATGTTTAATTTCTCTTGTTCAGTATTCGCAATAACATTT
TTTTGCTGATTAATCGCATATATCAAGCTTTATTACTTTACATCAAAAAA
GGCTTACCAATTTACATTTCAATAACGATACCTAGCTATTGAAGTAAGTC
ATTTGATAAGTATTATTGATGCAGGTGAGTGAAAAACCTTTATTACGGGG
GAAAAGGCACACAAACAACAATGCTTAATACTTATGTAGAGAGTGATGAT
AAACAGTTACAATGTTGTTTTTCTCATCCATGATATAGATAGTGACATCG
ATTTGTTCAACTGTTTTTCAACAATTTGTTCGACATGACAACTGCAGAAG
TTGGCTTTCTGACACCATTGGAGAAGAGGAATGATCACGGAAGAGATCAT
AACTATACCTATACTTGTAGCGAGTGTGGCAAGATGTTTGTTAATCGAAA
TGGTTTGAAGCGACACTTCCGAACTCACACTGGTGAGAAGCCCTACACAT
GTGAGCAGTGTAACCGACAGTTTAGCCAGCTGGGACATCTTAAGACACAC
ATTCTAACGCATACTGGCGAGAAACCGTACAGGTGTGAACTGTGCAGCAG
GATGTTCATCACGATGTCTAACTTGAAGACACACATAAGAAACCACACAG
GTGAAAAACCATTTCGTTGTGAGGAATGCAAAAGATGCTTCAGCAACCTT
ACTATTCTAAAGATACACATGAGGACTCACACCACCGAGAAACCGTACCG
ATGTGAGAAATGTGAGAAACGCTTCAGTCAGCTCGTACATCTGAAGGATC
ACATGAGGATTCACACGGGTGAGAAGCCGCACATGTGTAAAGACTGCAGG
ATGCAGTTTAGGCACCACAGCACTTTGCAGTCTCACAGAAGGACACACAC
TGGTCAGAAACCGTACAAATGTCAAAATTGTTCTAAAACCTTTAGACAGT
CTGCTCACCTTAGAACCCACATGCGGACTCATACTTGGGAAAAACCGTAC
ACATGTAAAACTTGTATCAAACAGTTTACTTCGCTGTCTAATCTGAAGAG
GCATATGTATATCCACGCGTGCTAGAGACCGTTTGTGTGAAATGTGAAGT
GCAGCAATAACTTAACCATTTAAAACGACCTTTAAAGATGACGCACGTAC
GGCGGGTTTTGAATCAAAGAAACTACGTCGTTTGGCAGTTATACAATGTC
AAAGTTGGCGCTGGCACTTTTAGCCCCCCCCCCCCC Coding sequence (CDS) from alignment at xfSc0002534:1..2186+ >transcript:BL89852_cuf2 ID=transcript:BL89852_cuf2|Name=transcript:BL89852_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=741bp|location=Sequence derived from alignment at xfSc0002534:1..2186+ (Branchiostoma lanceolatum)
ATGACAACTGCAGAAGTTGGCTTTCTGACACCATTGGAGAAGAGGAATGA
TCACGGAAGAGATCATAACTATACCTATACTTGTAGCGAGTGTGGCAAGA
TGTTTGTTAATCGAAATGGTTTGAAGCGACACTTCCGAACTCACACTGGT
GAGAAGCCCTACACATGTGAGCAGTGTAACCGACAGTTTAGCCAGCTGGG
ACATCTTAAGACACACATTCTAACGCATACTGGCGAGAAACCGTACAGGT
GTGAACTGTGCAGCAGGATGTTCATCACGATGTCTAACTTGAAGACACAC
ATAAGAAACCACACAGGTGAAAAACCATTTCGTTGTGAGGAATGCAAAAG
ATGCTTCAGCAACCTTACTATTCTAAAGATACACATGAGGACTCACACCA
CCGAGAAACCGTACCGATGTGAGAAATGTGAGAAACGCTTCAGTCAGCTC
GTACATCTGAAGGATCACATGAGGATTCACACGGGTGAGAAGCCGCACAT
GTGTAAAGACTGCAGGATGCAGTTTAGGCACCACAGCACTTTGCAGTCTC
ACAGAAGGACACACACTGGTCAGAAACCGTACAAATGTCAAAATTGTTCT
AAAACCTTTAGACAGTCTGCTCACCTTAGAACCCACATGCGGACTCATAC
TTGGGAAAAACCGTACACATGTAAAACTTGTATCAAACAGTTTACTTCGC
TGTCTAATCTGAAGAGGCATATGTATATCCACGCGTGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0002534 | genome | xfSc0002534:1..2186 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL89852_cuf2 |
| Biotype | protein_coding |
|
