transcript:BL89938_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL89938_cuf0
Unique Nametranscript:BL89938_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL89938_cuf0

>transcript:BL89938_cuf0-protein ID=transcript:BL89938_cuf0-protein|Name=transcript:BL89938_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=157bp
LATLDPSKALGPDAMSPLVLKKCADILAPSLALLFNKSIASGKFPTDWKD
AHVIPVHKKGSKGVVSNYRPVSLLSTLSKVMERCVHDSISSRLHGSIHNL
QHGFMKGRSTTTQLLEVYHHVGSVLDKGGQVDMLFLDFAKAFDSVSHSLL
VHKLQMF
Run BLAST on NCBI

mRNA from alignment at xfSc0000014:28769..29240-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL89938_cuf0 ID=transcript:BL89938_cuf0|Name=transcript:BL89938_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=472bp|location=Sequence derived from alignment at xfSc0000014:28769..29240- (Branchiostoma lanceolatum)
CTTGCCACACTAGATCCAAGCAAGGCCTTAGGCCCCGATGCAATGTCTCC
TCTTGTTCTAAAGAAATGTGCTGACATTCTCGCACCTTCCTTGGCTCTAC
TGTTTAACAAATCTATTGCTTCAGGGAAATTTCCCACTGACTGGAAAGAT
GCCCACGTCATTCCTGTCCACAAGAAAGGTAGTAAAGGGGTAGTTTCCAA
CTACAGGCCTGTTTCCTTACTTTCTACTCTAAGTAAAGTCATGGAAAGGT
GCGTACATGACAGTATATCAAGTAGACTACATGGCTCAATACACAATCTA
CAGCACGGTTTCATGAAAGGCCGTTCTACAACAACCCAGCTTTTGGAAGT
TTACCATCATGTTGGCTCAGTTCTGGATAAGGGCGGCCAAGTTGACATGT
TGTTTTTAGACTTTGCTAAAGCTTTTGACTCCGTTTCCCACAGTCTTCTA
GTTCACAAATTACAAATGTTCG

Coding sequence (CDS) from alignment at xfSc0000014:28769..29240-

>transcript:BL89938_cuf0 ID=transcript:BL89938_cuf0|Name=transcript:BL89938_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=471bp|location=Sequence derived from alignment at xfSc0000014:28769..29240- (Branchiostoma lanceolatum)
CTTGCCACACTAGATCCAAGCAAGGCCTTAGGCCCCGATGCAATGTCTCC
TCTTGTTCTAAAGAAATGTGCTGACATTCTCGCACCTTCCTTGGCTCTAC
TGTTTAACAAATCTATTGCTTCAGGGAAATTTCCCACTGACTGGAAAGAT
GCCCACGTCATTCCTGTCCACAAGAAAGGTAGTAAAGGGGTAGTTTCCAA
CTACAGGCCTGTTTCCTTACTTTCTACTCTAAGTAAAGTCATGGAAAGGT
GCGTACATGACAGTATATCAAGTAGACTACATGGCTCAATACACAATCTA
CAGCACGGTTTCATGAAAGGCCGTTCTACAACAACCCAGCTTTTGGAAGT
TTACCATCATGTTGGCTCAGTTCTGGATAAGGGCGGCCAAGTTGACATGT
TGTTTTTAGACTTTGCTAAAGCTTTTGACTCCGTTTCCCACAGTCTTCTA
GTTCACAAATTACAAATGTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL89938gene:BL89938Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL89938_cuf0-E1BL89938_cuf0-E1-1564476830-513215Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL89938_cuf0transcript:BL89938_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0000014genomexfSc0000014:28769..29240 -
Properties
Property NameValue
Transcript idBL89938_cuf0
Biotypeprotein_coding