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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90125_cuf2 >transcript:BL90125_cuf2-protein ID=transcript:BL90125_cuf2-protein|Name=transcript:BL90125_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=148bp
VNRQRRKREERKKFAIYYDASLTRRSSSPEPYGKGSSSKTQGKANSLMAG
DREIATMRRAQGNDRKYAKAIYDYKPREDNELKMKVGDIVEILEGEEGSW
CLGYLKGRMGLFPSSYVCFVPMSEVSPATSLYIHCATDGDIKPANGNL Run BLAST on NCBI mRNA from alignment at Sc0000020:2120182..2122848- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90125_cuf2 ID=transcript:BL90125_cuf2|Name=transcript:BL90125_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2667bp|location=Sequence derived from alignment at Sc0000020:2120182..2122848- (Branchiostoma lanceolatum)
TGTCAACCGGCAACGTAGAAAGCGAGAAGAGAGGAAAAAGTTTGCCATTT
ATTATGATGCTAGCTTAACAAGGAGAAGCTCGTCTCCAGAACCATATGGT
AAAGGGAGCTCATCAAAAACTCAAGGTAAGTAAACAAGATGCGAATTTTC
CGTTAAGACGTTTCCCATCGACGAAGGCAACATGAAATCTTGACTTGAAT
AGTTTTGAAACGGAAAACGTCACGCTTCATGAAGACAGGTAATGACGTGA
GCATTTTATATGTTGTATTCATTTATTTGGCAGGAAAGGCTAATAGCCTA
ATGGCAGGGGATCGGGAAATAGCGACAATGAGGAGAGCACAGGGGAATGG
TAGGTTTTAATTCACAGCATTATCTATCTCTTTAGCAGCATGGTGCATAT
GCAATTATGCCGAAACTCGAAGTTCTTTAATTGCACTCTTGTATATCAAA
GATATTTCACTTCACTTTATCATTCAGTAAGTGTACATTGTTGAGAAATA
TGTCGCCATAAGACATTCTTTCTTTACAACATGTGGAGAAACAATGCCAC
AAACAATGTGTAAAATACAATAAAAAGTTAAGGAACAGTTAAATTTTCTA
GAAAAAAAATGCTATTGATTGCTTTGCTAATATATTCTAATGTATGTCGT
GTTAGAACGTGTCACCATCTTGGTAACCATCGTTAGTCGTTTCATTCGCT
TAGTCGTTATCCATTAATTTGCTATCATTTGTTTGTTAAATCAATTGATA
CATTTATTCAGTGATTAGTCATATATTTATTTTCATTATTTTCATTTTCG
CTATTCTACTTTTCAGTTGTTATTCATCTACCTGTTATCACTTAAATGCT
ACAGTTAAAAGTTGTTATGTGTTCTTCTGTTTAAGCACCATTAGTTACTA
TTGTCAATCGTTCGTTAAACTCAGAAAAAAAATGTAGACTGACTTGTATG
GTCCATATATGCATCTATTGTCAATCCAAGCATATTGCTTATATGCCCTA
GTGCTTTTATTAGCAAGTACAAAAAAGCGTAATGTGCATTTGTGGTTTTT
ATCACGTAGACAGGAAATACGCTAAAGCCATCTACGACTATAAGCCACGG
GAGGACAACGAGCTAAAAATGAAAGTCGGCGACATTGTAGAGATACTGGA
GGGCGAGGAAGGGAGCTGGTGCCTTGGCTATCTAAAAGGGCGAATGGGAC
TGTTTCCTTCAAGCTACGTTTGTTTCGTACCGATGTCAGAAGGTAACAAC
CTTAACATAGTACAAAAATTACTCACTTTTTTTCAATTGGATCGGTGGAT
TTTGTTTCTCTGTGTCTGTATGTGTTTTTAATGTGACATGTGCAGGTATG
TTATGTGAAATGCAATAAAAGATTACTCAGGAAAATGAATAGATTTTGCA
AGGAGGCCCCATGTGAGAAACTTTCCTGCATTTCGCCCCTGCTCTGCCAC
CTCCGCAAGACAGCTCCTCTTACCATCCAACCTTATCTTGACTTTGTCTT
AGGTTGAACTGCCTTACAATTATTGCTTCACCTCATTTACGTAGCTATTG
TATATCTGCTCGAATTTGGATTTTTAAAGTCAAAGGATGCTACCTAACGT
TTGACCGTTTACTAAATCTATCCACTGGCAGTCTCTTTACCGGAGTGTAT
AACCTTCATCGACGTAACACCATTTAGATGGATAATTTAAAGCCGGCACT
TGCGAGTAATACAATCCAATCCACTGGAGGTAAAAGTCAAATATGTTTAT
ATAAAACGACGATATCTTTGAAGCTGAGGCAGACTCGTATTACCTTTTGT
TGGAGAAGTTGCTTGGCATTGGTCATTCTCAGAGGGCCAAATTATATCAG
ATTGCTCCCTTTTTCCTTGTTCCCTTTAATCCAGTGTCTCCTGCTACATC
CCTGTACATCCATTGTGCGACAGACGGAGACATTAAGCCTGCAAATGGGA
ACCTATAGTGCAGGAGGGGAATCTCAACAGGACATCTTTTAATCATAGAT
TTCACCACATGCCGACAAGTCTTCTGATTAGATCAACGCATCTATGACTA
CAAGCCACGTGAGGACATCGAGCTGAAAATGGAAGTTGGCGAGATACCGG
AAGGCGAACTTTCTAGCGCCTTGCTCTGCCAACCCCGTGAGACAACATTA
TATCCTGTACTCAAACAACAGAAGCTAATTCATTAAGGTTAATTTGCATT
CAACGATATCTTGACTTTGTGCTTTATTTAGCTGTCATACAATTGTACCT
AACTTCACCTCATCTCATTGATTTATAGTTATGGTTAAATGTATGCTCGA
CTTCGGATTATTCTAAGTTACTGGATGCTGTATTCCTAAAACGTCTAACC
TCTTATAAAATCTATTCAGTTATTCAAAAACTTTTATTCTTTAATTTTTT
TCCGGTTTCTTACTAGCTGGATGAATAACCTTCATGTGTATTCGTATCCA
GTCAAAAGTCAAACATATTTTGGAAAACGACGATCACTTTGGAGCTGAAA
CAGACATATAACATTTTATTGAAGAAGTTGTTTGCGATTGGTCATTCCCA
CAGGGCCTAATTACACCATATTGTTCCCTTTCGCCTTGTTCCCTTTAATC
CAGTTTCCACGGCTACATCACTGTGCATCCATTCCCGGCCATTGTAACCA
TTATTGGAACTTCTTCA Coding sequence (CDS) from alignment at Sc0000020:2120182..2122848- >transcript:BL90125_cuf2 ID=transcript:BL90125_cuf2|Name=transcript:BL90125_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1788bp|location=Sequence derived from alignment at Sc0000020:2120182..2122848- (Branchiostoma lanceolatum)
GTCAACCGGCAACGTAGAAAGCGAGAAGAGAGGAAAAAGTTTGCCATTTA
TTATGATGCTAGCTTAACAAGGAGAAGCTCGTCTCCAGAACCATATGGTA
AAGGGAGCTCATCAAAAACTCAAGGAAAGGCTAATAGCCTAATGGCAGGG
GATCGGGAAATAGCGACAATGAGGAGAGCACAGGGGAATGACAGGAAATA
CGCTAAAGCCATCTACGACTATAAGCCACGGGAGGACAACGAGCTAAAAA
TGAAAGTCGGCGACATTGTAGAGATACTGGAGGGCGAGGAAGGGAGCTGG
TGCCTTGGCTATCTAAAAGGGCGAATGGGACTGTTTCCTTCAAGCTACGT
TTGTTTCGTACCGATGTCAGAAGTGTCTCCTGCTACATCCCTGTACATCC
ATTGTGCGACAGACGGAGACATTAAGCCTGCAAATGGGAACCTATAGGTC
AACCGGCAACGTAGAAAGCGAGAAGAGAGGAAAAAGTTTGCCATTTATTA
TGATGCTAGCTTAACAAGGAGAAGCTCGTCTCCAGAACCATATGGTAAAG
GGAGCTCATCAAAAACTCAAGGAAAGGCTAATAGCCTAATGGCAGGGGAT
CGGGAAATAGCGACAATGAGGAGAGCACAGGGGAATGACAGGAAATACGC
TAAAGCCATCTACGACTATAAGCCACGGGAGGACAACGAGCTAAAAATGA
AAGTCGGCGACATTGTAGAGATACTGGAGGGCGAGGAAGGGAGCTGGTGC
CTTGGCTATCTAAAAGGGCGAATGGGACTGTTTCCTTCAAGCTACGTTTG
TTTCGTACCGATGTCAGAAGTGTCTCCTGCTACATCCCTGTACATCCATT
GTGCGACAGACGGAGACATTAAGCCTGCAAATGGGAACCTATAGGTCAAC
CGGCAACGTAGAAAGCGAGAAGAGAGGAAAAAGTTTGCCATTTATTATGA
TGCTAGCTTAACAAGGAGAAGCTCGTCTCCAGAACCATATGGTAAAGGGA
GCTCATCAAAAACTCAAGGAAAGGCTAATAGCCTAATGGCAGGGGATCGG
GAAATAGCGACAATGAGGAGAGCACAGGGGAATGACAGGAAATACGCTAA
AGCCATCTACGACTATAAGCCACGGGAGGACAACGAGCTAAAAATGAAAG
TCGGCGACATTGTAGAGATACTGGAGGGCGAGGAAGGGAGCTGGTGCCTT
GGCTATCTAAAAGGGCGAATGGGACTGTTTCCTTCAAGCTACGTTTGTTT
CGTACCGATGTCAGAAGTGTCTCCTGCTACATCCCTGTACATCCATTGTG
CGACAGACGGAGACATTAAGCCTGCAAATGGGAACCTATAGGTCAACCGG
CAACGTAGAAAGCGAGAAGAGAGGAAAAAGTTTGCCATTTATTATGATGC
TAGCTTAACAAGGAGAAGCTCGTCTCCAGAACCATATGGTAAAGGGAGCT
CATCAAAAACTCAAGGAAAGGCTAATAGCCTAATGGCAGGGGATCGGGAA
ATAGCGACAATGAGGAGAGCACAGGGGAATGACAGGAAATACGCTAAAGC
CATCTACGACTATAAGCCACGGGAGGACAACGAGCTAAAAATGAAAGTCG
GCGACATTGTAGAGATACTGGAGGGCGAGGAAGGGAGCTGGTGCCTTGGC
TATCTAAAAGGGCGAATGGGACTGTTTCCTTCAAGCTACGTTTGTTTCGT
ACCGATGTCAGAAGTGTCTCCTGCTACATCCCTGTACATCCATTGTGCGA
CAGACGGAGACATTAAGCCTGCAAATGGGAACCTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000020 | genome | Sc0000020:2120182..2122848 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90125_cuf2 |
| Biotype | protein_coding |
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