transcript:BL90182_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL90182_cuf0
Unique Nametranscript:BL90182_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL90182_cuf0

>transcript:BL90182_cuf0-protein ID=transcript:BL90182_cuf0-protein|Name=transcript:BL90182_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=123bp
FCVFVGLYVAEQFGEENVNTYFILTSGWCKALFVFCGIITGCYLCCCFCC
CCNFCCGKCKPRPEEDEEFVNLNPEDLQVDEEDSPVTSQPQASAAMPMPA
PAPSETTKLDTADHPSYTEEKNL
Run BLAST on NCBI

mRNA from alignment at xfSc0020237:1..704-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL90182_cuf0 ID=transcript:BL90182_cuf0|Name=transcript:BL90182_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=704bp|location=Sequence derived from alignment at xfSc0020237:1..704- (Branchiostoma lanceolatum)
TTTCTGTGTTTTTGTAGGTCTGTATGTAGCAGAACAGTTTGGAGAAGAAA
ACGTCAACACGTACTTCATCCTGACCAGCGGCTGGTGTAAAGCGCTGTTT
GTGTTCTGTGGCATCATCACCGGGTGCTACCTCTGTTGCTGCTTCTGCTG
CTGCTGTAACTTCTGCTGTGGGAAGTGCAAACCACGACCAGAGGAGGACG
AGGAGTTTGTAAACCTCAACCCCGAGGATTTACAAGTAGATGAGGAGGAC
TCGCCCGTCACGTCTCAACCCCAGGCCTCGGCCGCGATGCCCATGCCCGC
ACCGGCGCCCTCAGAAACGACAAAGTTAGACACGGCAGACCACCCGTCAT
ATACAGAGGAGAAGAACTTGTAGGGATCCATAGTTAATATCTGTCTCCTA
AGTTTCTGGAACAGTCTCATGTGACACAGGCTATTCTTTGACAAATAAAG
AGAACACTTCTGACATTAACATCCTGAGGTTTACAACACCCAGTTTACCA
GCCCATGGGTGTAACTCACTAACTGCCACAGAATTCAACCTCTTTCATGT
CAAGAATTTATTAGCTATAAAATGTTTTACAGAAGGTATGAGAAACAGGA
AAAAGATTCTACAGATTTTTACTTATTTGACCTGGTTTTATATTACAGCA
CCATTTATTGAGATAAGAAAGTCTATGGCATATTGCAAGGTCATTTCCAC
TTTT

Coding sequence (CDS) from alignment at xfSc0020237:1..704-

>transcript:BL90182_cuf0 ID=transcript:BL90182_cuf0|Name=transcript:BL90182_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=372bp|location=Sequence derived from alignment at xfSc0020237:1..704- (Branchiostoma lanceolatum)
TTCTGTGTTTTTGTAGGTCTGTATGTAGCAGAACAGTTTGGAGAAGAAAA
CGTCAACACGTACTTCATCCTGACCAGCGGCTGGTGTAAAGCGCTGTTTG
TGTTCTGTGGCATCATCACCGGGTGCTACCTCTGTTGCTGCTTCTGCTGC
TGCTGTAACTTCTGCTGTGGGAAGTGCAAACCACGACCAGAGGAGGACGA
GGAGTTTGTAAACCTCAACCCCGAGGATTTACAAGTAGATGAGGAGGACT
CGCCCGTCACGTCTCAACCCCAGGCCTCGGCCGCGATGCCCATGCCCGCA
CCGGCGCCCTCAGAAACGACAAAGTTAGACACGGCAGACCACCCGTCATA
TACAGAGGAGAAGAACTTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL90182gene:BL90182Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL90182_cuf0-E1BL90182_cuf0-E1-1564476830-545758Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL90182_cuf0transcript:BL90182_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0020237genomexfSc0020237:1..704 -
Properties
Property NameValue
Transcript idBL90182_cuf0
Biotypeprotein_coding