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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90221_cuf0 >transcript:BL90221_cuf0-protein ID=transcript:BL90221_cuf0-protein|Name=transcript:BL90221_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=1225bp
MGLLKVNIGSYNCNGLGDRKKRIEVFTWLQDKSYDIVCLQETHCTQKNEE
EWKTNWGASILFNNGASNSRGVMILFRKHFPYTIHQTLSDDSGRWMVVDI
TINSLRFCLANVYAPNIDDPSFFFNLETKLQNCSTSAKHIIITGDFNTVL
DTRIDRTGRQNSNYHPNCLQAINSLCANLDLIDIYRYKNPRTTRYTWRRR
SQASRIDYFLTSFSLTSSIDKVVIAESMRSDHSLIGISLITSNIPRGPGF
WRLNLELLKCPEFINETSTFIKEYFEFNKESTDPHILWDSFKCAVRGHTI
KFSSWKFKQSRNKEQSLIREIDELQESLDRLFDNDVFQNLQKKKRELELL
YQTKTNNLIVSQKAKWMEHGEKCSKLFMNLVERNQARKNMTKVITSDGIE
KTDPQEILNEQVKFFSGLYSFEEPPTPLDSNMFETFFPKPVPVSLSEEQR
DSCEGLITERELKEAISSFSAGRSPGLDGLPIDFYTTFYNILKQPMLDTF
NYAFRSGHLSETQKVGLISLLLKQDATGQDKEPTNLKNWRPLTLLNCDVR
ILSKCIGLRMKNSMPHLISYDQTGFLQGRNIGDSIRRILEIMEFYDTHEK
PGLLFIADFEKAFDKIRRDFILKVLDYVGFGRSLIQWINVLYQDISSKVI
NYGYISRAFPLVRGVRQGCPLSPYLFILGLEVLSNKIRNNIEIEGLITHG
IETKISQFADDANFPLAPKLATVYAVIRDLEGFALLSGLVANFEKCKVVR
IGSLKGSDFVLPCAWPIQWTDGPFDILGIHIPQNFSELVSINFDRKLVKM
DRILQPWKGKALSLFGKVTLVNTLIVSQFIYLFNSLPTPPATFFKQYEKK
IFKFLWGSGPERVKRKTIYNIQEQGGLKLRNLLAVDRTIKASWMPKLYLN
KNWFCSKVLFMSSPILRTNFLPFVQLKPQNFEDLLGKKVISTFFCQVIQY
WLKFQLRPPENAVEIKQQLLGLNSYICIGDKPFFNTIFHNRGVFFINDIL
DSANRTLSFENFVLKFGDDVCSALQYDQLISAIPSQWKNLLRQESPNLQV
CIPFCRNIKWLKNRKVNKALYFFFMSEAKLWEPSFNIQYSWEDYFNTPIP
WQQVYNLIYKISIDSKTRIFQYKLLFKFLASNQKLYTWGLVDSPLCSLCK
EEEETVIHLFSDCHIVSAFWTQVNNWFVNHMGTYLNMTTFSIIFGNLSKH
CTVLSNLFIVLGKIYIFRNRHSVLR Run BLAST on NCBI mRNA from alignment at Sc0000014:2130800..2134512- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90221_cuf0 ID=transcript:BL90221_cuf0|Name=transcript:BL90221_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3713bp|location=Sequence derived from alignment at Sc0000014:2130800..2134512- (Branchiostoma lanceolatum)
TTAACTATGATTCGTGTGTACCTCAACAACTTCAGGCATGGGGTTATTAA
AAGTTAATATCGGCAGCTACAACTGCAACGGTTTGGGCGACCGAAAAAAG
AGAATAGAGGTATTCACGTGGTTACAAGACAAATCATATGACATTGTGTG
TCTTCAAGAGACGCATTGCACTCAAAAGAATGAGGAAGAATGGAAAACAA
ATTGGGGGGCGTCGATTTTGTTTAACAATGGTGCTAGCAACAGTAGAGGT
GTGATGATATTATTCAGAAAACATTTTCCATATACCATCCATCAAACTCT
CAGCGATGACTCGGGTAGATGGATGGTAGTGGACATTACTATAAACTCAC
TACGTTTTTGTTTGGCCAATGTTTATGCTCCCAATATAGACGACCCATCA
TTCTTCTTCAATCTCGAAACTAAATTACAAAATTGTTCAACCTCTGCAAA
ACATATTATAATTACAGGGGATTTTAATACAGTTTTGGATACTCGAATTG
ATAGGACTGGAAGACAGAACTCGAACTATCACCCTAATTGTCTTCAAGCT
ATCAATTCGCTATGTGCTAACCTAGATTTAATTGATATTTATAGATATAA
AAACCCGAGAACGACACGTTATACTTGGCGACGCCGATCTCAGGCCAGCC
GCATAGACTACTTTTTAACTTCTTTTTCGTTAACTTCGTCTATAGATAAA
GTGGTCATTGCGGAGAGCATGAGATCGGACCATTCCTTGATTGGCATATC
TTTAATAACTTCAAACATACCACGAGGCCCAGGTTTTTGGAGACTGAACC
TAGAACTCTTGAAATGCCCAGAATTTATTAACGAAACATCTACTTTTATT
AAAGAATATTTTGAATTTAACAAGGAGTCCACTGATCCGCATATTTTGTG
GGACTCATTTAAATGCGCCGTGCGCGGGCATACGATTAAGTTCTCCTCGT
GGAAATTTAAGCAAAGTAGAAATAAAGAACAATCGCTCATTAGAGAGATA
GACGAACTGCAAGAGAGTTTAGACCGCTTATTTGACAATGATGTCTTCCA
AAACCTGCAAAAAAAGAAACGTGAATTAGAATTGCTTTATCAAACAAAAA
CAAACAACTTGATTGTAAGTCAGAAGGCCAAGTGGATGGAACATGGTGAA
AAATGTTCAAAACTTTTCATGAATCTAGTTGAGAGAAATCAAGCTAGAAA
AAACATGACAAAAGTTATTACCTCAGATGGTATTGAAAAAACAGATCCAC
AAGAAATTTTAAATGAACAAGTGAAATTTTTCTCCGGTCTTTATTCTTTT
GAAGAACCTCCGACACCTCTAGATAGCAATATGTTTGAAACTTTTTTTCC
TAAGCCAGTACCTGTTAGCTTATCTGAAGAGCAACGGGATAGTTGTGAAG
GCTTAATAACAGAAAGAGAGCTTAAAGAAGCAATTTCGTCCTTTTCGGCC
GGGAGATCACCCGGATTAGATGGACTACCAATTGATTTCTATACAACATT
TTACAATATTCTTAAACAACCCATGCTAGATACATTTAATTATGCATTTC
GCTCAGGCCATCTTTCTGAAACTCAAAAAGTCGGACTAATTTCATTATTA
CTGAAACAGGATGCCACAGGACAGGACAAAGAACCCACAAATCTAAAAAA
TTGGCGTCCACTAACTTTATTAAACTGTGATGTTCGAATATTATCGAAAT
GTATCGGCCTGCGCATGAAAAATAGTATGCCACATTTGATTTCATATGAC
CAAACAGGTTTTTTGCAAGGGAGAAATATTGGGGATAGTATAAGAAGAAT
ACTGGAAATTATGGAATTTTATGACACACATGAAAAACCAGGGTTACTCT
TTATTGCAGATTTCGAGAAGGCCTTTGACAAGATTAGAAGGGATTTCATT
TTGAAAGTACTAGATTATGTTGGCTTTGGAAGATCATTGATACAATGGAT
AAATGTGTTATATCAAGATATTTCGAGTAAAGTTATCAACTATGGATATA
TATCCAGAGCATTCCCTCTGGTTCGCGGGGTCCGGCAAGGCTGTCCCCTA
TCCCCTTATCTCTTCATTTTAGGACTAGAAGTTTTATCAAACAAAATTAG
AAATAATATCGAAATAGAAGGTCTAATAACTCATGGTATCGAAACTAAAA
TTTCACAGTTTGCGGACGATGCAAATTTTCCTTTGGCTCCGAAACTTGCA
ACCGTTTATGCGGTGATAAGAGACTTAGAAGGCTTTGCACTGTTATCTGG
TTTAGTAGCAAATTTCGAAAAATGTAAAGTAGTACGTATAGGCTCTCTTA
AGGGGTCAGACTTTGTCTTACCGTGTGCATGGCCCATACAGTGGACAGAT
GGTCCGTTCGACATTTTAGGTATACACATTCCACAAAACTTTTCAGAACT
TGTATCAATCAACTTTGATCGAAAACTTGTAAAAATGGATAGAATATTAC
AGCCCTGGAAAGGGAAAGCACTGTCCCTTTTTGGGAAAGTAACCCTAGTG
AACACATTAATAGTCTCCCAATTTATATATTTATTTAATTCACTTCCAAC
CCCACCTGCCACTTTCTTTAAACAATACGAAAAAAAAATCTTCAAGTTCT
TATGGGGAAGTGGCCCAGAGAGAGTTAAAAGAAAAACCATTTACAATATC
CAAGAACAAGGTGGACTCAAGCTCCGAAATCTTCTAGCTGTAGATCGAAC
TATAAAAGCATCTTGGATGCCAAAATTGTATTTGAATAAAAACTGGTTTT
GTTCAAAAGTGTTGTTTATGTCGAGTCCGATTCTAAGGACGAATTTCCTT
CCCTTTGTGCAGCTTAAACCTCAAAACTTTGAAGATTTGTTGGGGAAAAA
AGTGATTAGTACATTTTTTTGTCAAGTTATACAATATTGGTTGAAATTCC
AATTACGACCTCCTGAGAATGCAGTGGAAATCAAACAGCAACTTTTGGGT
TTAAATTCGTATATATGTATTGGGGACAAACCCTTCTTTAACACTATATT
TCATAATAGGGGAGTATTCTTCATCAATGATATTTTAGACTCAGCAAATA
GAACTTTATCTTTTGAAAATTTTGTGTTGAAATTTGGAGATGATGTTTGT
TCCGCATTACAATATGATCAATTAATCTCGGCCATCCCTTCTCAGTGGAA
AAACTTACTTAGACAAGAGTCCCCAAATCTACAGGTCTGTATCCCTTTCT
GTAGAAATATAAAATGGCTTAAAAACAGAAAGGTTAATAAGGCCCTTTAT
TTCTTTTTCATGTCCGAAGCTAAATTATGGGAACCTTCTTTTAACATTCA
GTATTCATGGGAAGACTATTTTAACACCCCAATACCCTGGCAACAGGTGT
ATAACTTAATATATAAGATAAGTATAGATTCGAAGACTCGTATATTTCAA
TATAAATTATTATTCAAATTCTTAGCATCAAATCAAAAATTATACACATG
GGGACTAGTAGACTCACCACTTTGTAGTTTGTGTAAAGAAGAGGAAGAAA
CGGTTATACACCTGTTCTCTGACTGTCATATTGTATCAGCCTTTTGGACT
CAAGTAAACAACTGGTTTGTTAATCATATGGGAACCTATCTAAACATGAC
AACATTTAGTATAATTTTTGGTAATTTGAGTAAACACTGTACAGTCCTAT
CCAATTTGTTCATTGTGTTAGGTAAAATCTACATCTTTAGAAACCGTCAT
TCTGTACTTAGAT Coding sequence (CDS) from alignment at Sc0000014:2130800..2134512- >transcript:BL90221_cuf0 ID=transcript:BL90221_cuf0|Name=transcript:BL90221_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3675bp|location=Sequence derived from alignment at Sc0000014:2130800..2134512- (Branchiostoma lanceolatum)
ATGGGGTTATTAAAAGTTAATATCGGCAGCTACAACTGCAACGGTTTGGG
CGACCGAAAAAAGAGAATAGAGGTATTCACGTGGTTACAAGACAAATCAT
ATGACATTGTGTGTCTTCAAGAGACGCATTGCACTCAAAAGAATGAGGAA
GAATGGAAAACAAATTGGGGGGCGTCGATTTTGTTTAACAATGGTGCTAG
CAACAGTAGAGGTGTGATGATATTATTCAGAAAACATTTTCCATATACCA
TCCATCAAACTCTCAGCGATGACTCGGGTAGATGGATGGTAGTGGACATT
ACTATAAACTCACTACGTTTTTGTTTGGCCAATGTTTATGCTCCCAATAT
AGACGACCCATCATTCTTCTTCAATCTCGAAACTAAATTACAAAATTGTT
CAACCTCTGCAAAACATATTATAATTACAGGGGATTTTAATACAGTTTTG
GATACTCGAATTGATAGGACTGGAAGACAGAACTCGAACTATCACCCTAA
TTGTCTTCAAGCTATCAATTCGCTATGTGCTAACCTAGATTTAATTGATA
TTTATAGATATAAAAACCCGAGAACGACACGTTATACTTGGCGACGCCGA
TCTCAGGCCAGCCGCATAGACTACTTTTTAACTTCTTTTTCGTTAACTTC
GTCTATAGATAAAGTGGTCATTGCGGAGAGCATGAGATCGGACCATTCCT
TGATTGGCATATCTTTAATAACTTCAAACATACCACGAGGCCCAGGTTTT
TGGAGACTGAACCTAGAACTCTTGAAATGCCCAGAATTTATTAACGAAAC
ATCTACTTTTATTAAAGAATATTTTGAATTTAACAAGGAGTCCACTGATC
CGCATATTTTGTGGGACTCATTTAAATGCGCCGTGCGCGGGCATACGATT
AAGTTCTCCTCGTGGAAATTTAAGCAAAGTAGAAATAAAGAACAATCGCT
CATTAGAGAGATAGACGAACTGCAAGAGAGTTTAGACCGCTTATTTGACA
ATGATGTCTTCCAAAACCTGCAAAAAAAGAAACGTGAATTAGAATTGCTT
TATCAAACAAAAACAAACAACTTGATTGTAAGTCAGAAGGCCAAGTGGAT
GGAACATGGTGAAAAATGTTCAAAACTTTTCATGAATCTAGTTGAGAGAA
ATCAAGCTAGAAAAAACATGACAAAAGTTATTACCTCAGATGGTATTGAA
AAAACAGATCCACAAGAAATTTTAAATGAACAAGTGAAATTTTTCTCCGG
TCTTTATTCTTTTGAAGAACCTCCGACACCTCTAGATAGCAATATGTTTG
AAACTTTTTTTCCTAAGCCAGTACCTGTTAGCTTATCTGAAGAGCAACGG
GATAGTTGTGAAGGCTTAATAACAGAAAGAGAGCTTAAAGAAGCAATTTC
GTCCTTTTCGGCCGGGAGATCACCCGGATTAGATGGACTACCAATTGATT
TCTATACAACATTTTACAATATTCTTAAACAACCCATGCTAGATACATTT
AATTATGCATTTCGCTCAGGCCATCTTTCTGAAACTCAAAAAGTCGGACT
AATTTCATTATTACTGAAACAGGATGCCACAGGACAGGACAAAGAACCCA
CAAATCTAAAAAATTGGCGTCCACTAACTTTATTAAACTGTGATGTTCGA
ATATTATCGAAATGTATCGGCCTGCGCATGAAAAATAGTATGCCACATTT
GATTTCATATGACCAAACAGGTTTTTTGCAAGGGAGAAATATTGGGGATA
GTATAAGAAGAATACTGGAAATTATGGAATTTTATGACACACATGAAAAA
CCAGGGTTACTCTTTATTGCAGATTTCGAGAAGGCCTTTGACAAGATTAG
AAGGGATTTCATTTTGAAAGTACTAGATTATGTTGGCTTTGGAAGATCAT
TGATACAATGGATAAATGTGTTATATCAAGATATTTCGAGTAAAGTTATC
AACTATGGATATATATCCAGAGCATTCCCTCTGGTTCGCGGGGTCCGGCA
AGGCTGTCCCCTATCCCCTTATCTCTTCATTTTAGGACTAGAAGTTTTAT
CAAACAAAATTAGAAATAATATCGAAATAGAAGGTCTAATAACTCATGGT
ATCGAAACTAAAATTTCACAGTTTGCGGACGATGCAAATTTTCCTTTGGC
TCCGAAACTTGCAACCGTTTATGCGGTGATAAGAGACTTAGAAGGCTTTG
CACTGTTATCTGGTTTAGTAGCAAATTTCGAAAAATGTAAAGTAGTACGT
ATAGGCTCTCTTAAGGGGTCAGACTTTGTCTTACCGTGTGCATGGCCCAT
ACAGTGGACAGATGGTCCGTTCGACATTTTAGGTATACACATTCCACAAA
ACTTTTCAGAACTTGTATCAATCAACTTTGATCGAAAACTTGTAAAAATG
GATAGAATATTACAGCCCTGGAAAGGGAAAGCACTGTCCCTTTTTGGGAA
AGTAACCCTAGTGAACACATTAATAGTCTCCCAATTTATATATTTATTTA
ATTCACTTCCAACCCCACCTGCCACTTTCTTTAAACAATACGAAAAAAAA
ATCTTCAAGTTCTTATGGGGAAGTGGCCCAGAGAGAGTTAAAAGAAAAAC
CATTTACAATATCCAAGAACAAGGTGGACTCAAGCTCCGAAATCTTCTAG
CTGTAGATCGAACTATAAAAGCATCTTGGATGCCAAAATTGTATTTGAAT
AAAAACTGGTTTTGTTCAAAAGTGTTGTTTATGTCGAGTCCGATTCTAAG
GACGAATTTCCTTCCCTTTGTGCAGCTTAAACCTCAAAACTTTGAAGATT
TGTTGGGGAAAAAAGTGATTAGTACATTTTTTTGTCAAGTTATACAATAT
TGGTTGAAATTCCAATTACGACCTCCTGAGAATGCAGTGGAAATCAAACA
GCAACTTTTGGGTTTAAATTCGTATATATGTATTGGGGACAAACCCTTCT
TTAACACTATATTTCATAATAGGGGAGTATTCTTCATCAATGATATTTTA
GACTCAGCAAATAGAACTTTATCTTTTGAAAATTTTGTGTTGAAATTTGG
AGATGATGTTTGTTCCGCATTACAATATGATCAATTAATCTCGGCCATCC
CTTCTCAGTGGAAAAACTTACTTAGACAAGAGTCCCCAAATCTACAGGTC
TGTATCCCTTTCTGTAGAAATATAAAATGGCTTAAAAACAGAAAGGTTAA
TAAGGCCCTTTATTTCTTTTTCATGTCCGAAGCTAAATTATGGGAACCTT
CTTTTAACATTCAGTATTCATGGGAAGACTATTTTAACACCCCAATACCC
TGGCAACAGGTGTATAACTTAATATATAAGATAAGTATAGATTCGAAGAC
TCGTATATTTCAATATAAATTATTATTCAAATTCTTAGCATCAAATCAAA
AATTATACACATGGGGACTAGTAGACTCACCACTTTGTAGTTTGTGTAAA
GAAGAGGAAGAAACGGTTATACACCTGTTCTCTGACTGTCATATTGTATC
AGCCTTTTGGACTCAAGTAAACAACTGGTTTGTTAATCATATGGGAACCT
ATCTAAACATGACAACATTTAGTATAATTTTTGGTAATTTGAGTAAACAC
TGTACAGTCCTATCCAATTTGTTCATTGTGTTAGGTAAAATCTACATCTT
TAGAAACCGTCATTCTGTACTTAGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000014 | genome | Sc0000014:2130800..2134512 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90221_cuf0 |
| Biotype | protein_coding |
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