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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90236_cuf2 >transcript:BL90236_cuf2-protein ID=transcript:BL90236_cuf2-protein|Name=transcript:BL90236_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=217bp
MNMPELKQGNCSHCCPVAPTTQLSVAPRQPANSSVDPQQPSTSSVDPQQP
STSSVDPQQPSTSSVDPQQPTAGSHRDDSDEEVRCEAQIIKLKGSTFEER
YQVPLKAVRKEMLERGTTVAVRLEFERDNPQDINAIKIEAQVENVWKIIG
YIPVGKIPKVKSAIRKREIVSAKLISVPKWEFHPYKSGYGVSIVIVKKGK
WLPDDHHNKWNSDLSYI Run BLAST on NCBI mRNA from alignment at Sc0000004:4183260..4186158+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90236_cuf2 ID=transcript:BL90236_cuf2|Name=transcript:BL90236_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2899bp|location=Sequence derived from alignment at Sc0000004:4183260..4186158+ (Branchiostoma lanceolatum)
CGGTTTCCGGTCACTAGAAGATATATACGTTGGGCCGGAAGTCTGATTTC
ATTTCGAATCATGGCAGCATTGGAGATAGACAGAAGTGTAGTAGATCCGG
CCTTTTCATCCTGCAATATTGTGAGTCTGTACTGTATTGAGAGGCCATTA
TTCCTAACATGGGACAGCCTGGAGATTGTTTCGGTGAACCTACGGTTCTG
TCACATTTCTATGGCCACCTCAATGAGACAGCGACACTGGGCTCTGATTG
CAGACAGACAAGAATGGGGTGCAGGTCATCGAAACTTTCCCGCACCAAAG
CTGATCCGTGTGACTAGTAGCTGTACCGTTAGGGTGAGTCTCTTTGAACT
ATCCTTGAGTGACTAGCATTATCTGCTGAGCATTCTCTAAAAATCACGCT
GTATATTTCGCCGCCGGATCGGGCGAAGGGGGAGGGGGGCACGGCTTGTT
ATGTACGGAGCCGTAGGGGACTTGAAGACGAGCTAGTAAAGAAAGACAAG
CCGTCAGAAATCATGACGTTTTAACAAACCAACGTAGAATCTAAAGCATG
GATTGAATTGTAGAAGTTTGATTGTGCACATATGTACGTTTCACGTCTGT
TTCAAGTCGCTAATGGAATGAAATAACTTCGAACTCTCTGATGTAGGCAT
GACAATGTGGGTCAAGATGGCTACCGGGGAAAACGACGCCACCTCCTATT
GAAAATTTTTTGCCTGTTGTCAATAATAATCATGTTTTTATCGACTATGC
TGTTGATACTTTTGATTGACAAAACGTTGATGTTTTCTTGATTCAAGTTA
AGTCCTGTACCGAAACACAGATTTTACGTCCATATGTATCTGTTGGCTAT
AACTTTGCTTGGAATAAATCGGGGAGGGGTGGCAAAATCGTGCTATAATA
TTATTGTTGTCTAACAAGTTGTTCAGAAGCAATGTCTTGTGTACACCATA
TTCCTAATATTTATCATGACCAATATTTTAAATCATTCAAGTTTGAACCT
GCGATAGCAAACCGCTGTAGTAATCACCCGGTGTTATCATCAGTAGAATT
TAAGTGACCATTGTCATTTCTAAATCCAATGTTTTCTCACAATACAGTGG
TACGACGAAGATGGAGAACCCTCTGAGTCACCCTGCATATGGGAATGGGA
GGGCATCACCAACATTCCACCGAATATTCCCACTGGTGACCTCGCCGCTA
TGAATATGCCAGAGCTGAAACAAGGGAACTGTTCCCACTGCTGTCCTGTC
GCCCCCACCACACAGTTATCAGTTGCCCCAAGACAACCCGCTAACTCATC
GGTCGACCCACAACAACCCTCAACCTCATCAGTCGACCCACAGCAACCCT
CAACCTCGTCAGTCGACCCACAGCAACCCTCAACCTCTTCAGTCGACCCA
CAGCAACCCACAGCAGGCAGCCACAGGGATGACAGTGATGAAGAGGTGAG
ATGTGAGGCCCAGATCATCAAGTTGAAAGGGTCGACTTTTGAGGAACGTT
ACCAGGTTCCACTGAAAGCCGTCAGGAAAGAAATGCTTGAACGGGGGACA
ACTGTGGCCGTCAGACTTGAATTTGAAAGAGACAATCCGCAAGATATAAA
TGCAATCAAAATTGAGGCACAGGTGGAAAATGTATGGAAAATCATTGGGT
ACATTCCAGTTGGAAAAATACCAAAAGTTAAAAGTGCCATACGGAAGCGA
GAAATAGTGTCGGCTAAGTTGATATCTGTTCCTAAGTGGGAATTCCATCC
GTATAAATCTGGTTATGGGGTATCAATAGTAATTGTAAAGAAAGGGAAAT
GGCTACCGGATGATCACCACAATAAGTGGAATAGTGACCTGTCATACATT
TAAGTTAAATATTAATGTTTATCTATCATGAGAACAAAAAATTCCCTGGC
AAGTATGTAAGTCTGTATATATGTATTATATATATTGTGCACTATAACAT
ATGGAGTTTGTCTTGTGAGTATTTACATGTATCTTGTACATTGAAACAAC
ATTGGGAATACTCATTGTCAAAGCCATGTCACAACTAAATAATGTCTTGC
ATATATACATTAAGTACATTGTAAAAGCATAAGGAAACTTTTGTGTCATG
GTCAAATGGCAACCTACTCAAGTCTACTTTTTTGTATGTACATTGTTGAA
TAACATCAGTATTCAAGACACAGTCTCCACAGTATATATACTTTGTCTTG
TGAGTATTTACATGTATCTTGTACATTGAAACAACATTGGGAATACTCAT
TGTCAAAGCCATGTCACAACTAAATAATGTCTTGCATATATACATTAAGT
ACATTGTAAAAGCATAAGGAAACTTTTGTGTCATGGTCAAATGGCAACCT
ACTCAAGTCTAATTTTTTGTATGTACATTGTTGAATAACATCAGTATTCA
AGACACAGTCTCCACAGTATATATACTTTGTCTTGTGAATATATACATGT
ATCTTGTACATTGAAACAGCATCAGAAATACTCAGTATTCAAGTCACGTT
ACAACTAAATCATGTGTCACATATACATTTAGTACTAGTATTATGTCAAA
GTCATGTAACGTCTAAATCATGTCTTGCATATACATTGTACCAACAAGGG
AATACTCTGGCAAAGTCATGTTACAACTTGAATCGTTGAATAACATAAGT
AGTACTTCAGGCACTGTCTGTATATATACATTGAACACTGTGACCAGTGG
AGTTTGTCTTGGAAATATATATCTTGTACTACATTTTAACAACAGGCATA
GTCAGGGTCATGGTCAGTGTCATATTTGTATATACATTGTTGGCTGACTG
ACTGAGGCCATATTATAATATACATTTTGTACATATAAACATTGTTGAAT
AAAAGAGTTACCTGGTAGCAAATGGACTATGTCTTTTATATACATTGAC Coding sequence (CDS) from alignment at Sc0000004:4183260..4186158+ >transcript:BL90236_cuf2 ID=transcript:BL90236_cuf2|Name=transcript:BL90236_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=654bp|location=Sequence derived from alignment at Sc0000004:4183260..4186158+ (Branchiostoma lanceolatum)
ATGAATATGCCAGAGCTGAAACAAGGGAACTGTTCCCACTGCTGTCCTGT
CGCCCCCACCACACAGTTATCAGTTGCCCCAAGACAACCCGCTAACTCAT
CGGTCGACCCACAACAACCCTCAACCTCATCAGTCGACCCACAGCAACCC
TCAACCTCGTCAGTCGACCCACAGCAACCCTCAACCTCTTCAGTCGACCC
ACAGCAACCCACAGCAGGCAGCCACAGGGATGACAGTGATGAAGAGGTGA
GATGTGAGGCCCAGATCATCAAGTTGAAAGGGTCGACTTTTGAGGAACGT
TACCAGGTTCCACTGAAAGCCGTCAGGAAAGAAATGCTTGAACGGGGGAC
AACTGTGGCCGTCAGACTTGAATTTGAAAGAGACAATCCGCAAGATATAA
ATGCAATCAAAATTGAGGCACAGGTGGAAAATGTATGGAAAATCATTGGG
TACATTCCAGTTGGAAAAATACCAAAAGTTAAAAGTGCCATACGGAAGCG
AGAAATAGTGTCGGCTAAGTTGATATCTGTTCCTAAGTGGGAATTCCATC
CGTATAAATCTGGTTATGGGGTATCAATAGTAATTGTAAAGAAAGGGAAA
TGGCTACCGGATGATCACCACAATAAGTGGAATAGTGACCTGTCATACAT
TTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:4183260..4186158 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90236_cuf2 |
| Biotype | protein_coding |
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