|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90238_cuf0 >transcript:BL90238_cuf0-protein ID=transcript:BL90238_cuf0-protein|Name=transcript:BL90238_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=162bp
KYSQDALKEAQSKKFDAAGDSVVVKTAQEVSELTSEVKYKEQAEKIKSQH
KVPADAPDFVWAKEVGELQNQRLYAKDKSDKYVPVLDTPVNLHAKEAGSL
QSHLPYSNRNAGTLFSEYRGQRYTPLITLEKKHTDEVQSMISDVIYKDEA
KEIMQKGHSQYP Run BLAST on NCBI mRNA from alignment at Sc0000000:7640354..7642089- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90238_cuf0 ID=transcript:BL90238_cuf0|Name=transcript:BL90238_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1736bp|location=Sequence derived from alignment at Sc0000000:7640354..7642089- (Branchiostoma lanceolatum)
GAAATATTCCCAAGATGCGCTGAAAGAGGCTCAGTCCAAGAAGTTTGATG
CAGCTGGGGACTCAGTGGTGGTGAAGACTGCTCAGGAGGTCTCAGAGCTG
ACAAGTGAGGTAGGAAAAAATTGTCTTCTCTCAACACTTAGGGTTTTCTT
TTCTAGACAGAGGACAAGGGAATGGAGTAACTGAGCAAGGGGATGTTGCT
TTAAGGGGAGGGGGGTTCTTTCTCTGGTAGTGTTTGAATCTAAATGTAAG
TAAAAATGGGGCATTCTTTTAAAAAAAAAAGCCCACTGTGATCGGAAATT
ATTTTCTAACAGACTGTGGCCTTGTGGGGTATGTGCATAAGTTGGACATT
GGTAGATCTTAGTTGGTATTAGAAGACTGAAGTTGGTGCATTTTCTATTT
TAAACTTAAAGAAAAACTTAAACTTAAAGCTGACACATTTTGATGCTGTA
GAGATTCACAGATTAGTTATTGTTAAAACTAGTGCTTTAGTACCAAGGAC
AGGACCTGCAGCAGATATATAGGTGCAAAAGCAGAGTGTAACAATGGAAA
ACTGACCAATCTTTGGACTTTCTTCAGGTCAAGTACAAGGAGCAGGCTGA
AAAGATCAAGTCTCAGCACAAGGTGCCTGCTGATGCACCTGACTTCGTCT
GGGCCAAGGAGGTTGGAGAGCTACAGAACCAGGTAAAGCACCCTCTGGTG
ATACATTACTGAGCTGCAGATCACCTTGCATACATGTGTAGCATAGTGAA
GAAGCCAATAGAATTATGTTTGTACATGTAGGTCCGGATATAACTTTCAG
TCAGGGTTGAAAAACTGTTTTATTTTGCATCTATTTTCAGTCATGAACGA
GTCAAAGAAAGAATTACAGAGCAGTCTTGTATTCTTACAATATCTTAAAG
TACTTTGTTTGATTTCTCTCATAATTATGATGTATTAATCTTTGGAAATG
TTCTTTTACAGCGCTTGTATGCAAAAGACAAGTCAGACAAGTATGTCCCT
GTACTTGACACCCCAGTCAACCTACACGCTAAGGAGGCTGGCAGCCTACA
GAGCCATGTAAGTCATCCTCTTCCTTAGTCTTGTGCATGCTTTGTCTTAA
GTGTAAGTCAAGAAGAAAAGGTATCCAGTTTGCAGCTGATATTTTGCACT
CTTTAGAAATCTACTCTTTACAAATGCATGTATGTGGCAGATTGAGATTT
GGCAATGAAGTTAATGTAGTCACCACTTTGGGCTGTTAGCTGTCCTAAAT
ACTTGTAAAGCAAACGACAACTGACAACTCATTTTGCAAAGATTCAGACT
GCAGATATTGAGACAAGGGGGAAAAATTGCTGGGTATACAATGGAAAAAA
ATTGTAGGGCATACAATGGGAAAGATTGTTGGTTATAGAACATCCTGGTA
TCAATAGTGACAATACAATAAATGTCTTTATTTTGTATTTTGGGAAGATA
GATATGTTTCTCGCAAATTGTGTTAGGTACTGTTGAGAAAATTCTGCCTA
GAACTGTGTGAATGGTTACTGTAATACATGACTTGTATTTTCTATCACTC
AACACACAGCTCCCATACAGCAACCGCAACGCTGGTACGCTGTTCTCGGA
GTACCGCGGTCAGCGCTACACGCCGCTGATCACTCTGGAGAAGAAGCACA
CTGACGAAGTCCAGAGCATGATCAGTGATGTCATCTACAAGGATGAGGCT
AAGGAGATCATGCAGAAGGGACACAGTCAGTACCCC Coding sequence (CDS) from alignment at Sc0000000:7640354..7642089- >transcript:BL90238_cuf0 ID=transcript:BL90238_cuf0|Name=transcript:BL90238_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1944bp|location=Sequence derived from alignment at Sc0000000:7640354..7642089- (Branchiostoma lanceolatum)
AAATATTCCCAAGATGCGCTGAAAGAGGCTCAGTCCAAGAAGTTTGATGC
AGCTGGGGACTCAGTGGTGGTGAAGACTGCTCAGGAGGTCTCAGAGCTGA
CAAGTGAGGTCAAGTACAAGGAGCAGGCTGAAAAGATCAAGTCTCAGCAC
AAGGTGCCTGCTGATGCACCTGACTTCGTCTGGGCCAAGGAGGTTGGAGA
GCTACAGAACCAGCGCTTGTATGCAAAAGACAAGTCAGACAAGTATGTCC
CTGTACTTGACACCCCAGTCAACCTACACGCTAAGGAGGCTGGCAGCCTA
CAGAGCCATCTCCCATACAGCAACCGCAACGCTGGTACGCTGTTCTCGGA
GTACCGCGGTCAGCGCTACACGCCGCTGATCACTCTGGAGAAGAAGCACA
CTGACGAAGTCCAGAGCATGATCAGTGATGTCATCTACAAGGATGAGGCT
AAGGAGATCATGCAGAAGGGACACAGTCAGTACCCCAAATATTCCCAAGA
TGCGCTGAAAGAGGCTCAGTCCAAGAAGTTTGATGCAGCTGGGGACTCAG
TGGTGGTGAAGACTGCTCAGGAGGTCTCAGAGCTGACAAGTGAGGTCAAG
TACAAGGAGCAGGCTGAAAAGATCAAGTCTCAGCACAAGGTGCCTGCTGA
TGCACCTGACTTCGTCTGGGCCAAGGAGGTTGGAGAGCTACAGAACCAGC
GCTTGTATGCAAAAGACAAGTCAGACAAGTATGTCCCTGTACTTGACACC
CCAGTCAACCTACACGCTAAGGAGGCTGGCAGCCTACAGAGCCATCTCCC
ATACAGCAACCGCAACGCTGGTACGCTGTTCTCGGAGTACCGCGGTCAGC
GCTACACGCCGCTGATCACTCTGGAGAAGAAGCACACTGACGAAGTCCAG
AGCATGATCAGTGATGTCATCTACAAGGATGAGGCTAAGGAGATCATGCA
GAAGGGACACAGTCAGTACCCCAAATATTCCCAAGATGCGCTGAAAGAGG
CTCAGTCCAAGAAGTTTGATGCAGCTGGGGACTCAGTGGTGGTGAAGACT
GCTCAGGAGGTCTCAGAGCTGACAAGTGAGGTCAAGTACAAGGAGCAGGC
TGAAAAGATCAAGTCTCAGCACAAGGTGCCTGCTGATGCACCTGACTTCG
TCTGGGCCAAGGAGGTTGGAGAGCTACAGAACCAGCGCTTGTATGCAAAA
GACAAGTCAGACAAGTATGTCCCTGTACTTGACACCCCAGTCAACCTACA
CGCTAAGGAGGCTGGCAGCCTACAGAGCCATCTCCCATACAGCAACCGCA
ACGCTGGTACGCTGTTCTCGGAGTACCGCGGTCAGCGCTACACGCCGCTG
ATCACTCTGGAGAAGAAGCACACTGACGAAGTCCAGAGCATGATCAGTGA
TGTCATCTACAAGGATGAGGCTAAGGAGATCATGCAGAAGGGACACAGTC
AGTACCCCAAATATTCCCAAGATGCGCTGAAAGAGGCTCAGTCCAAGAAG
TTTGATGCAGCTGGGGACTCAGTGGTGGTGAAGACTGCTCAGGAGGTCTC
AGAGCTGACAAGTGAGGTCAAGTACAAGGAGCAGGCTGAAAAGATCAAGT
CTCAGCACAAGGTGCCTGCTGATGCACCTGACTTCGTCTGGGCCAAGGAG
GTTGGAGAGCTACAGAACCAGCGCTTGTATGCAAAAGACAAGTCAGACAA
GTATGTCCCTGTACTTGACACCCCAGTCAACCTACACGCTAAGGAGGCTG
GCAGCCTACAGAGCCATCTCCCATACAGCAACCGCAACGCTGGTACGCTG
TTCTCGGAGTACCGCGGTCAGCGCTACACGCCGCTGATCACTCTGGAGAA
GAAGCACACTGACGAAGTCCAGAGCATGATCAGTGATGTCATCTACAAGG
ATGAGGCTAAGGAGATCATGCAGAAGGGACACAGTCAGTACCCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:7640354..7642089 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90238_cuf0 |
| Biotype | protein_coding |
|
