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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90247_cuf0 >transcript:BL90247_cuf0-protein ID=transcript:BL90247_cuf0-protein|Name=transcript:BL90247_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=101bp
MSYPTQQPQYPAGSAAPPPPYIQQPMGTYPPPQGPPMYPGGKVTPMTAPQ
QFSQPTVMYPQQQVQYLQPTVVHVTQQPQQRSRDDDCCLFACCVAIWCCC
C Run BLAST on NCBI mRNA from alignment at Sc0000013:3623083..3625798- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90247_cuf0 ID=transcript:BL90247_cuf0|Name=transcript:BL90247_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2716bp|location=Sequence derived from alignment at Sc0000013:3623083..3625798- (Branchiostoma lanceolatum)
TATCATTTCGCTGATACTAATGTGACGAAAGTGGTGTATACACAGCTGCC
TTAATGTGTCTTTCCCAGTTGCTATGTGTATGCGATATTTATTTGCACAA
TCCAGCCTTGCTTGGAAACTCTGGACCTTGTCACAATGACCGACCCGGTG
GCAGTGATGAACAGCCGCTGGACAGCAGTTTTAGGCACTATAGGTTAAGA
GGGAACTGCTTGGGAACTGTTTACTCTGTTACAGACGAGCCCCACAAAGT
TGGACATAAAGACGGCCATTTTTCGACAGGAGTGAATTTTTTCTGTGAAT
TTCCTGCCCAACGACTCTGAAGGTACGTTCTTTACTTTATGTTAGAAGCG
CCAATGTCTGCCTTAGTAGCATTTTCAGCCACCTCTCTACCGAACGCAAT
ATCACAAAAATACAGTAGCAATAGTATCCTATTCAAAGTATAGTCGTACG
TACGTATACTGCACGGCAAATACGTCATAGCTTTTGAAGACCTATAGTTT
TGTATAGTTTTTTTTGTTTGATTGGTCGGTTAGTTGGGTTATATGGTTTG
TTTTGTTTTGATTAGGTTGTTTAATTTCGCGGTGTTTGGCTACAAAAGCT
TTTGCTCTTTAAGTTATATGATGATATTATTACACTAGGTCTATTCAGAT
AGTTTGTAAACATTCGTTTTTACTCTTTTAATTGACCGTATATGTCTGCC
TAGATTACGCAATCCAGTCACTTTTATATAATGTAGACGTAGACTGTGAT
GTAATCACCTTAATCCCCCCCCCCCCATCAACAGGGGGGGGGGGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAGGGGGGGGGGGGGGGTCA
CGGAAACTACCCATCATCCACCGTTATCTCTACTTTGTTTGATTGACAGG
TGATGAGTTACCCCACGCAACAGCCACAGTACCCAGCAGGCTCTGCGGCA
CCGCCACCCCCCTACATTCAACAGGTGAAGTTCAACTACAACCGAGTGAA
AACGTTATTGTATGTTAAAGCACCCGGGTCGATTGCGAACAAACAAACGA
ACCTGCAAATGATACTAAAGTTGTGATTATACTTGTAAAGACAGACAATA
AAAATGAGCAATCAGTTTACTGAATACTGATAGAAAAAAAGTGTCACCCT
ATAACTTTGTTCTCAATTCAGACGTACTGCTTTTATAAACTTAGTGCTTG
CAATATATTTACTAATTCTTGCAAGAAACTGCACACATCTGATTAACTGT
CGTAATTTTTTTCCAATTTCAAATTTGTGTCTTACTGTGCTCCGTCAGCC
AATGGGAACCTACCCACCTCCACAAGGTCCCCCGATGTATCCTGGGGGAA
AAGTTACACCAATGACGGCACCGCAACAGTTCTCACAACCAACAGGTAAA
TATCATTTCTTTTCCTTTCAGAAGCTGTGTATAGACGCCCTACAGGAATA
ATTCCATATTAGAAGCAAAACATAATGTTTCAATAATCTTGGAGCGAAGT
TCATGTTAATGCAGTTCAAGCAAAATCGGCTAGATGTCGCCATAATGGCG
CACATTTTTTGTATTGCTACCGTTGGACTGTAAAATCCTACAAAGGCTTG
CAAAAAACAAATAAAAAACAAACAAACTAAAATAAACATTTATACTGGAT
AGGCAGTAGCGTAACAACTGGTCTTTGTAATAACCTAGATTTTGATTCAT
TGGTTCAGCATTATTATTGCCCCTCCTCCTCCAAAAAATAATGACAACGC
CACAATAAAAGAAGATCTAAGATTTTATAACATTCTCTTCTAGTCCTGAA
ACTTTACTGTATTTTCATGTATTCAGCTAATGGTAATACGGATGACATTG
TGAGAGTACCTTTCAGTTGTGTTGTGAAGCATTCTTGTTTTATTCAACTA
TTCTCAATTCATATCATTTTACTTTTTGTATACATCAATTGTTGTATACA
AAATGCCGTATGATTTGTATGGGCAGCACTTCTTTGTTAAACGATGACAA
CGCCAGGCTCTTCTGGAATTTGATTAATGAAATTCTGAATCAAAGTTAAA
CTTAACTGTAACTGGCAACACAAAATTGTTTGTGTGTTTGCAACTGAGTT
CAACTTTGATTCAATCAGAATGTATTCTACCAACACAGATGGACTTTCAA
GTGCTGATTAAAGAAAATTTCAACAAATTAAATGTAAAGAAATAGATGAT
AATCGTTGCATTGTTTTTTGATCCATAGTTGTGTATGTGTTACACTTCTG
TACGTTTGGGACCTCATAGTGATGTCATCCCCTGTGATTGTACATATGTA
AATACTTTACGTTTGGGATTGCATCTCATTAATATGTATAATCAACAGCA
CCTGTGCTGCATTGTTATGTGAACCAATTAGAATTGCCTTGAAGAAGGTG
ACAGATGGTCGGTGGAATAAATCTCTTGGTTGTGTAAAAATAGTCTTTTT
TTTATTCAGTGACGTACCAACCTGTTCAAACTATTCACGGAAATGAAATT
TTGATTTGTTCCCTTCAGTGATGTACCCTCAGCAGCAGGTGCAGTACCTC
CAGCCGACAGTTGTTCACGTGACCCAGCAGCCTCAGCAGCGCAGCCGGGA
CGACGACTGCTGCCTCTTCGCCTGCTGTGTCGCCATTTGGTGCTGCTGTT
GCTGAGCGGGCATGTC Coding sequence (CDS) from alignment at Sc0000013:3623083..3625798- >transcript:BL90247_cuf0 ID=transcript:BL90247_cuf0|Name=transcript:BL90247_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=918bp|location=Sequence derived from alignment at Sc0000013:3623083..3625798- (Branchiostoma lanceolatum)
ATGAGTTACCCCACGCAACAGCCACAGTACCCAGCAGGCTCTGCGGCACC
GCCACCCCCCTACATTCAACAGCCAATGGGAACCTACCCACCTCCACAAG
GTCCCCCGATGTATCCTGGGGGAAAAGTTACACCAATGACGGCACCGCAA
CAGTTCTCACAACCAACAGTGATGTACCCTCAGCAGCAGGTGCAGTACCT
CCAGCCGACAGTTGTTCACGTGACCCAGCAGCCTCAGCAGCGCAGCCGGG
ACGACGACTGCTGCCTCTTCGCCTGCTGTGTCGCCATTTGGTGCTGCTGT
TGCTGAATGAGTTACCCCACGCAACAGCCACAGTACCCAGCAGGCTCTGC
GGCACCGCCACCCCCCTACATTCAACAGCCAATGGGAACCTACCCACCTC
CACAAGGTCCCCCGATGTATCCTGGGGGAAAAGTTACACCAATGACGGCA
CCGCAACAGTTCTCACAACCAACAGTGATGTACCCTCAGCAGCAGGTGCA
GTACCTCCAGCCGACAGTTGTTCACGTGACCCAGCAGCCTCAGCAGCGCA
GCCGGGACGACGACTGCTGCCTCTTCGCCTGCTGTGTCGCCATTTGGTGC
TGCTGTTGCTGAATGAGTTACCCCACGCAACAGCCACAGTACCCAGCAGG
CTCTGCGGCACCGCCACCCCCCTACATTCAACAGCCAATGGGAACCTACC
CACCTCCACAAGGTCCCCCGATGTATCCTGGGGGAAAAGTTACACCAATG
ACGGCACCGCAACAGTTCTCACAACCAACAGTGATGTACCCTCAGCAGCA
GGTGCAGTACCTCCAGCCGACAGTTGTTCACGTGACCCAGCAGCCTCAGC
AGCGCAGCCGGGACGACGACTGCTGCCTCTTCGCCTGCTGTGTCGCCATT
TGGTGCTGCTGTTGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000013 | genome | Sc0000013:3623083..3625798 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90247_cuf0 |
| Biotype | protein_coding |
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