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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90262_cuf1 >transcript:BL90262_cuf1-protein ID=transcript:BL90262_cuf1-protein|Name=transcript:BL90262_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=1159bp
MSTMAFMGMNRVEGERLVAPRTGQFQGTPSFSSHPRSRGTTHIACSDCGF
QASSELDFLRHVSTHKVVIDVENPGNRDGRTSNFPSPLKRMRMSLEDAER
RFQHGHVYQAATVHKHNARREEGPATEQSSTAPLDLTTKPRRNTDEAPID
LRKPTSPTTQVLRTGLMAISPGRGQSPDSQIPATTVQVTTSQLPAGQRHV
NAPVMPRGPPPLIQVRRKSFQSHGILQVESRQTEPHDLTSVNCALVHPII
QQRMSNGQAFPICQGEQMKPVNTMQPSPPTPVVSPNIANLPTPPVGPKAS
SCRIQAPTRTTTPRRILPKQGTPSRDEVSTVSHQQLTAPPDTCDAAPARY
HRLGRVPEYLRGGTWHPDQPTTVEYSVPEAGVEQKPSSRSSLEWAWMSAI
STTIKQQRKRLKPGRKGGPKRPGTNLNRPTRSLRPSPEVTKQPDKPQQNG
SPNRQNKTQKVHNHVDEIELEQSPSQDIQEAQHQQQPQQKELHKQHPEPN
QQPSQENDTEEQIEELEQSQGQVQVVGNTYQRPDKQQADAETTLCQDIGS
KLWWQRLQELMTTLGEKQKQDPSFAGKWFESLFSVQGKHFPNMSTTTVEK
EASSEPTVTQDEETPDDSGHARRSTVDSDYISMDEAEDLARKVSIPGHQS
EYKEESTSPVDAASTDCINAKDETSQTALPIEEELETSPEDQKSKNHEGV
TTPKSDQVKSTDTTTAPGDTAVSPGHSDTVEKEKQHQEVLSQTQPLNVHF
FRCTPCNFFTTSKQKKLAHIRKHREKFECSVCLKVCRDKKCLDDHVQEHT
SQRQHECPHVSCNYRTPSISRLQSHKRTSHKNTCYQCPHCDYKTTVQGNM
NRHVRKHTDERPYKCLHCPYAARVSHHLQEHMQRHAGERPFKCDVCSFAT
LKKTDLDRHQRCHTGEKPFACELCPYRAPQKRMLARHVLKIHQKQRPHRC
QHCDFSAFDKKDIVEHMRLHSGEKPWKCSQCGYTTTRKRNLLRHVRVHTG
EKPFQCQLCPYAAADRRNLSDHIRTHTDERPYRCTICGYGSRTKGQLSRH
LKTQHEVKPYKCPHCPFTATDAARVHNHMQSHPHQLSAVYSHLFNLLGTR
GGGGEEPGIINRGASDGLPSPTGSNESVSSPSGSPASSQAADTFSSGASE
DGKCARGVK Run BLAST on NCBI mRNA from alignment at Sc0000176:121684..126397+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90262_cuf1 ID=transcript:BL90262_cuf1|Name=transcript:BL90262_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4714bp|location=Sequence derived from alignment at Sc0000176:121684..126397+ (Branchiostoma lanceolatum)
GTTATTCAACGTCGCCTTGCTATCAGGACAACCTTTTCTGAATAACGCAT
ATCGACTAGCGTCTTACACTGACAAGATCACATGTACGTCGTCCGGCCAT
TTATTATTTGTGTCATTTATTACTTCTCGCATACAGTCACAAGTAAGTAC
AGGCAGGTGAGCGGAAATGAAATACACGGGGTAGATTTTATAGAATATCT
ACAGTTATGATATCAGTTCAAAGTCAAGATTGTTTGACTAGTTGCCTGAT
GTTTATGATGAAACATATTCTGTATTTGCAGATGTCCACAATGGCGTTCA
TGGGCATGAATCGGGTGGAGGGTGAGCGGTTGGTGGCTCCCCGCACGGGA
CAGTTCCAGGGAACCCCGTCTTTCTCCAGTCATCCCCGCAGCCGTGGCAC
GACACATATTGCCTGTAGCGACTGCGGCTTCCAGGCCAGCTCAGAGTTAG
ACTTCCTACGCCACGTCAGCACGCACAAAGTCGTCATCGACGTAGAAAAC
CCGGGGAATCGCGACGGGAGGACGTCAAACTTTCCGTCGCCCTTGAAACG
GATGCGAATGTCATTGGAAGACGCCGAAAGACGCTTCCAACATGGCCACG
TGTACCAGGCCGCGACTGTGCACAAGCACAACGCACGGAGGGAAGAGGGC
CCGGCTACTGAACAGTCTAGCACCGCCCCCCTGGACTTGACGACTAAGCC
GAGACGGAACACGGACGAAGCACCGATAGATCTTCGGAAACCCACATCAC
CCACTACTCAGGTGCTGCGGACTGGACTGATGGCTATCTCTCCAGGCCGC
GGCCAGAGTCCGGACAGCCAAATCCCAGCGACAACAGTACAAGTGACCAC
CTCTCAACTTCCAGCAGGTCAGCGCCATGTAAACGCCCCTGTCATGCCGA
GAGGACCACCTCCATTGATACAAGTCAGACGTAAATCATTCCAGTCCCAT
GGCATACTGCAGGTGGAATCAAGACAAACAGAACCACACGATCTGACATC
TGTTAACTGTGCCTTGGTGCACCCAATCATTCAGCAACGAATGAGCAACG
GACAGGCCTTTCCCATATGTCAAGGTGAACAAATGAAGCCAGTCAACACA
ATGCAGCCAAGTCCACCGACGCCCGTTGTATCACCAAATATAGCGAATCT
GCCTACTCCACCGGTTGGACCAAAGGCGTCGTCTTGTCGTATCCAAGCCC
CCACAAGAACCACAACGCCAAGGCGGATTCTTCCCAAGCAAGGCACACCA
AGCCGTGATGAAGTGTCGACTGTCTCTCACCAGCAGCTTACAGCTCCGCC
AGACACCTGCGACGCGGCACCTGCTCGCTATCACCGGCTCGGCCGCGTGC
CTGAGTACCTGAGGGGTGGCACCTGGCATCCAGATCAGCCAACCACCGTG
GAATACAGCGTCCCAGAGGCAGGGGTGGAGCAAAAACCATCAAGCCGCTC
ATCCTTGGAGTGGGCATGGATGTCCGCCATTTCCACCACTATCAAACAGC
AGCGGAAGAGGCTGAAACCCGGGCGCAAGGGCGGACCGAAACGGCCCGGA
ACAAATCTGAACCGACCGACAAGGAGTTTGAGGCCAAGTCCTGAAGTAAC
AAAACAGCCAGATAAACCACAGCAGAATGGTTCTCCAAATAGACAGAACA
AAACACAGAAAGTACACAACCATGTTGATGAAATTGAGCTGGAACAAAGT
CCAAGTCAAGATATACAAGAGGCACAACATCAACAGCAACCTCAACAGAA
AGAGCTACACAAGCAACACCCAGAACCAAATCAGCAGCCAAGTCAGGAAA
ATGATACAGAGGAACAGATAGAAGAGTTAGAGCAAAGTCAAGGACAGGTT
CAAGTAGTTGGAAATACCTACCAGAGACCTGATAAACAACAGGCAGACGC
GGAGACGACTCTATGTCAAGATATCGGAAGCAAGTTGTGGTGGCAGCGAC
TACAGGAGCTGATGACCACGCTGGGAGAGAAGCAGAAGCAAGACCCAAGT
TTTGCAGGAAAGTGGTTCGAGTCCCTGTTCTCGGTGCAAGGCAAACATTT
TCCCAACATGTCAACAACGACTGTTGAGAAAGAAGCATCAAGTGAACCGA
CAGTCACACAGGACGAAGAAACACCCGACGACAGTGGACACGCAAGAAGA
TCAACAGTTGATTCTGACTACATCAGCATGGATGAAGCCGAAGATCTGGC
TCGGAAAGTTTCGATCCCGGGTCATCAGAGTGAATATAAAGAAGAATCCA
CCTCTCCAGTTGATGCTGCGTCAACAGATTGCATCAATGCGAAAGACGAG
ACCTCGCAAACAGCATTACCCATCGAAGAGGAACTGGAGACATCACCGGA
AGATCAAAAGTCGAAAAATCATGAAGGTGTAACCACTCCAAAATCTGATC
AGGTAAAATCAACGGACACTACCACTGCCCCAGGAGACACGGCCGTTTCA
CCGGGACACAGCGACACAGTGGAAAAGGAAAAGCAACATCAGGAGGTGTT
GAGTCAGACTCAGCCGCTGAACGTCCATTTCTTCCGCTGCACACCTTGCA
ACTTCTTCACCACGTCAAAGCAGAAGAAGCTCGCCCACATCAGAAAGCAC
AGGGAGAAGTTCGAGTGCTCCGTCTGCCTGAAAGTATGCCGTGACAAGAA
ATGCCTGGACGATCACGTGCAAGAACATACCAGTCAGCGTCAGCACGAAT
GCCCACACGTCTCCTGCAACTACCGCACACCTTCAATCTCCCGTTTGCAA
AGCCACAAGAGGACCTCACACAAGAACACCTGCTACCAGTGTCCGCATTG
TGACTATAAAACTACTGTCCAGGGGAACATGAATCGACACGTCCGGAAGC
ACACGGACGAAAGACCGTACAAATGCCTCCATTGTCCGTACGCCGCCCGA
GTCAGCCACCATCTTCAAGAACACATGCAAAGGCACGCAGGGGAACGTCC
GTTTAAGTGCGACGTGTGCAGCTTCGCCACCTTGAAGAAAACGGATCTCG
ACCGACATCAGAGATGCCACACCGGAGAAAAACCGTTCGCCTGTGAACTG
TGCCCCTATCGGGCGCCTCAAAAACGCATGCTGGCGCGACACGTGCTGAA
GATTCATCAGAAACAGAGACCGCATCGCTGTCAACACTGTGACTTCAGCG
CCTTCGACAAGAAAGACATTGTCGAGCACATGCGGCTGCACAGCGGCGAG
AAGCCCTGGAAGTGCTCGCAGTGTGGCTACACCACAACTCGGAAGCGAAA
CTTGCTCCGTCATGTCCGAGTGCACACAGGCGAGAAGCCGTTCCAATGTC
AGCTGTGCCCGTACGCGGCAGCCGACAGGAGGAACCTTTCGGACCACATC
CGCACACACACCGACGAGCGGCCATACAGGTGTACCATCTGCGGTTACGG
CTCCAGAACAAAGGGACAACTCAGTCGCCATCTGAAAACTCAACACGAAG
TCAAACCGTACAAGTGTCCCCACTGTCCATTCACGGCGACAGACGCAGCT
CGCGTCCACAATCACATGCAGAGCCACCCTCACCAGCTATCAGCTGTCTA
CAGTCACCTCTTCAACCTGCTGGGCACGCGAGGTGGAGGGGGCGAGGAGC
CAGGCATCATCAACAGAGGAGCGAGTGATGGCCTCCCATCGCCAACGGGG
TCCAACGAGTCAGTGTCATCTCCTTCCGGGTCACCCGCCTCGTCTCAGGC
AGCCGACACTTTCTCTTCCGGTGCAAGTGAAGATGGGAAGTGTGCACGGG
GCGTCAAGTGAGACCGTAGCATCTATTACGATTTAAAGATAGCCAGCCTT
CTTTGTATGAATAGATTCAACTTTCATAACAAAGCTTATCAGCCATAACA
GATATCACTTATGACCACAGAACTCAAAGTAATAGGGTCAAATGGACTGA
ATAGTTCAGTATCAAGTTAGTATATATAGTTTGGGAAGAGAATTACGCGT
TGAACACTTGCTTATAGGAGACTTCAGAGACAGTCTCTCTTGAAAATGAT
GATAAAACTAAATATGTCAAAATAACATTTTATATAAGAATGTTTGATCT
GGGACTTGGGTCATGGTATGAAAGGTCTTGGGACTTGTACATATTCATTC
ATATAATTGGGAGGGATCATAATGGAGAGTAGTAATTGGTATTTCTGGAT
GAAGAAAAAGCTTTCGCTAATACATATAATTAGGTATATTTCAATATCAT
AATGCGATGTCTTCGATATCCTGAAGACTGGGTGTCTGTGAATGTTTTAA
GGCTAACGTAACATTAATGGAATTTGTGTTCACTTGATATTCTTATTGAT
GTACATATGGTGCTACCCACGTTTATCAACCTGTATATGGTAAAATATCA
AAAAGGAGCGACTTATTTTTTACGAATATGTGAAAAAGAAGTCAGAGGGA
TACGGAGAGTGATTCGCTGTTTACGTTATATTACCTCTTGGTTTGAATCT
AGTGTTGTGATTTTTGGAAATATTCAAGTTAAAGCTGCTTGTATGTTAGG
TGAGGATACAATCGTTAATAAAATTGGGTTGATGAGACTTTGTTGTTCTG
TTGTGATTTCAAACATTGAAGTCAACGGAATTCTAATGGTATTGCATGTG
AGGAACAGTGATTTCAGAGATGTGAAATAATCTGGTAGCGTCGGACAAGA
TGGAGTCATAAACAAACCAGGAAAAGTTACTCTTCAAGCAGAGGTGATTT
TAGGTGTTTTTGAC Coding sequence (CDS) from alignment at Sc0000176:121684..126397+ >transcript:BL90262_cuf1 ID=transcript:BL90262_cuf1|Name=transcript:BL90262_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3480bp|location=Sequence derived from alignment at Sc0000176:121684..126397+ (Branchiostoma lanceolatum)
ATGTCCACAATGGCGTTCATGGGCATGAATCGGGTGGAGGGTGAGCGGTT
GGTGGCTCCCCGCACGGGACAGTTCCAGGGAACCCCGTCTTTCTCCAGTC
ATCCCCGCAGCCGTGGCACGACACATATTGCCTGTAGCGACTGCGGCTTC
CAGGCCAGCTCAGAGTTAGACTTCCTACGCCACGTCAGCACGCACAAAGT
CGTCATCGACGTAGAAAACCCGGGGAATCGCGACGGGAGGACGTCAAACT
TTCCGTCGCCCTTGAAACGGATGCGAATGTCATTGGAAGACGCCGAAAGA
CGCTTCCAACATGGCCACGTGTACCAGGCCGCGACTGTGCACAAGCACAA
CGCACGGAGGGAAGAGGGCCCGGCTACTGAACAGTCTAGCACCGCCCCCC
TGGACTTGACGACTAAGCCGAGACGGAACACGGACGAAGCACCGATAGAT
CTTCGGAAACCCACATCACCCACTACTCAGGTGCTGCGGACTGGACTGAT
GGCTATCTCTCCAGGCCGCGGCCAGAGTCCGGACAGCCAAATCCCAGCGA
CAACAGTACAAGTGACCACCTCTCAACTTCCAGCAGGTCAGCGCCATGTA
AACGCCCCTGTCATGCCGAGAGGACCACCTCCATTGATACAAGTCAGACG
TAAATCATTCCAGTCCCATGGCATACTGCAGGTGGAATCAAGACAAACAG
AACCACACGATCTGACATCTGTTAACTGTGCCTTGGTGCACCCAATCATT
CAGCAACGAATGAGCAACGGACAGGCCTTTCCCATATGTCAAGGTGAACA
AATGAAGCCAGTCAACACAATGCAGCCAAGTCCACCGACGCCCGTTGTAT
CACCAAATATAGCGAATCTGCCTACTCCACCGGTTGGACCAAAGGCGTCG
TCTTGTCGTATCCAAGCCCCCACAAGAACCACAACGCCAAGGCGGATTCT
TCCCAAGCAAGGCACACCAAGCCGTGATGAAGTGTCGACTGTCTCTCACC
AGCAGCTTACAGCTCCGCCAGACACCTGCGACGCGGCACCTGCTCGCTAT
CACCGGCTCGGCCGCGTGCCTGAGTACCTGAGGGGTGGCACCTGGCATCC
AGATCAGCCAACCACCGTGGAATACAGCGTCCCAGAGGCAGGGGTGGAGC
AAAAACCATCAAGCCGCTCATCCTTGGAGTGGGCATGGATGTCCGCCATT
TCCACCACTATCAAACAGCAGCGGAAGAGGCTGAAACCCGGGCGCAAGGG
CGGACCGAAACGGCCCGGAACAAATCTGAACCGACCGACAAGGAGTTTGA
GGCCAAGTCCTGAAGTAACAAAACAGCCAGATAAACCACAGCAGAATGGT
TCTCCAAATAGACAGAACAAAACACAGAAAGTACACAACCATGTTGATGA
AATTGAGCTGGAACAAAGTCCAAGTCAAGATATACAAGAGGCACAACATC
AACAGCAACCTCAACAGAAAGAGCTACACAAGCAACACCCAGAACCAAAT
CAGCAGCCAAGTCAGGAAAATGATACAGAGGAACAGATAGAAGAGTTAGA
GCAAAGTCAAGGACAGGTTCAAGTAGTTGGAAATACCTACCAGAGACCTG
ATAAACAACAGGCAGACGCGGAGACGACTCTATGTCAAGATATCGGAAGC
AAGTTGTGGTGGCAGCGACTACAGGAGCTGATGACCACGCTGGGAGAGAA
GCAGAAGCAAGACCCAAGTTTTGCAGGAAAGTGGTTCGAGTCCCTGTTCT
CGGTGCAAGGCAAACATTTTCCCAACATGTCAACAACGACTGTTGAGAAA
GAAGCATCAAGTGAACCGACAGTCACACAGGACGAAGAAACACCCGACGA
CAGTGGACACGCAAGAAGATCAACAGTTGATTCTGACTACATCAGCATGG
ATGAAGCCGAAGATCTGGCTCGGAAAGTTTCGATCCCGGGTCATCAGAGT
GAATATAAAGAAGAATCCACCTCTCCAGTTGATGCTGCGTCAACAGATTG
CATCAATGCGAAAGACGAGACCTCGCAAACAGCATTACCCATCGAAGAGG
AACTGGAGACATCACCGGAAGATCAAAAGTCGAAAAATCATGAAGGTGTA
ACCACTCCAAAATCTGATCAGGTAAAATCAACGGACACTACCACTGCCCC
AGGAGACACGGCCGTTTCACCGGGACACAGCGACACAGTGGAAAAGGAAA
AGCAACATCAGGAGGTGTTGAGTCAGACTCAGCCGCTGAACGTCCATTTC
TTCCGCTGCACACCTTGCAACTTCTTCACCACGTCAAAGCAGAAGAAGCT
CGCCCACATCAGAAAGCACAGGGAGAAGTTCGAGTGCTCCGTCTGCCTGA
AAGTATGCCGTGACAAGAAATGCCTGGACGATCACGTGCAAGAACATACC
AGTCAGCGTCAGCACGAATGCCCACACGTCTCCTGCAACTACCGCACACC
TTCAATCTCCCGTTTGCAAAGCCACAAGAGGACCTCACACAAGAACACCT
GCTACCAGTGTCCGCATTGTGACTATAAAACTACTGTCCAGGGGAACATG
AATCGACACGTCCGGAAGCACACGGACGAAAGACCGTACAAATGCCTCCA
TTGTCCGTACGCCGCCCGAGTCAGCCACCATCTTCAAGAACACATGCAAA
GGCACGCAGGGGAACGTCCGTTTAAGTGCGACGTGTGCAGCTTCGCCACC
TTGAAGAAAACGGATCTCGACCGACATCAGAGATGCCACACCGGAGAAAA
ACCGTTCGCCTGTGAACTGTGCCCCTATCGGGCGCCTCAAAAACGCATGC
TGGCGCGACACGTGCTGAAGATTCATCAGAAACAGAGACCGCATCGCTGT
CAACACTGTGACTTCAGCGCCTTCGACAAGAAAGACATTGTCGAGCACAT
GCGGCTGCACAGCGGCGAGAAGCCCTGGAAGTGCTCGCAGTGTGGCTACA
CCACAACTCGGAAGCGAAACTTGCTCCGTCATGTCCGAGTGCACACAGGC
GAGAAGCCGTTCCAATGTCAGCTGTGCCCGTACGCGGCAGCCGACAGGAG
GAACCTTTCGGACCACATCCGCACACACACCGACGAGCGGCCATACAGGT
GTACCATCTGCGGTTACGGCTCCAGAACAAAGGGACAACTCAGTCGCCAT
CTGAAAACTCAACACGAAGTCAAACCGTACAAGTGTCCCCACTGTCCATT
CACGGCGACAGACGCAGCTCGCGTCCACAATCACATGCAGAGCCACCCTC
ACCAGCTATCAGCTGTCTACAGTCACCTCTTCAACCTGCTGGGCACGCGA
GGTGGAGGGGGCGAGGAGCCAGGCATCATCAACAGAGGAGCGAGTGATGG
CCTCCCATCGCCAACGGGGTCCAACGAGTCAGTGTCATCTCCTTCCGGGT
CACCCGCCTCGTCTCAGGCAGCCGACACTTTCTCTTCCGGTGCAAGTGAA
GATGGGAAGTGTGCACGGGGCGTCAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000176 | genome | Sc0000176:121684..126397 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90262_cuf1 |
| Biotype | protein_coding |
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