transcript:BL90291_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL90291_cuf0
Unique Nametranscript:BL90291_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL90291_cuf0

>transcript:BL90291_cuf0-protein ID=transcript:BL90291_cuf0-protein|Name=transcript:BL90291_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=563bp
RYAAHALAVVNQNIVELLQLTSIYNALQLSNVLQFTCGCDSRAAQSVLEE
LISLSSKEFVNLQPEHLDKPGWLLPVPVSRRMWACAETYRQFVLLCLDII
TERQESDVLNAVSRALPFLVLFQFNNRKRQAAFKYYLETIQSLELPARMI
LRPAHINHIKPFVQYLEELFTSPIPGLRLDLRTGFEPFMSPEQTIRLISV
LKNVPALRALDMSSSNLTPSSLQPLVRGFRHISLLEELDVSCNTLGDDGI
RVLQFGLSSIPHLAVLRLSSVGMTAVGMLFMAPYMRRLTRLTELDVSGNG
IGDIGLEILTAFLFFLTAMQVLTVRNTGISPAGIRALVPALAKLNGLIKL
NVSDNAIGDDGLECLINILPLLPAMRVLVLREIRISDKGISALVKALPHL
LELQVLDVGFNYIGDSGIVSLVQTLGQPLSLKTEQTPPGDKSLPTAPRYN
TKLRELHMGHNTGVTGAGLGRVARHIHALPALTKLDMSGFQLSHAYLRDT
AAMDLAGALPKLPVLEWLMLGNICMDRAGFQAVVQATEEHTTLVKLQYDR
SGLPPGADTSARY
Run BLAST on NCBI

mRNA from alignment at Sc0000016:1020251..1022182+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL90291_cuf0 ID=transcript:BL90291_cuf0|Name=transcript:BL90291_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1932bp|location=Sequence derived from alignment at Sc0000016:1020251..1022182+ (Branchiostoma lanceolatum)
CGATATGCCGCTCATGCTCTGGCTGTGGTGAACCAAAACATTGTTGAGCT
GCTGCAGCTCACCTCCATTTACAACGCGCTTCAACTCAGTAACGTGCTCC
AGTTCACGTGTGGCTGTGACTCACGGGCGGCGCAAAGTGTGTTGGAAGAA
TTGATCAGTCTGAGCAGCAAAGAGTTTGTGAATTTACAACCAGAGCACCT
TGATAAACCGGGTTGGCTGTTACCGGTGCCTGTGTCGAGACGGATGTGGG
CATGCGCTGAAACGTACAGACAATTCGTTCTACTCTGCCTGGATATCATT
ACTGAAAGACAAGAGTCAGACGTACTGAACGCTGTCAGCAGAGCCTTGCC
ATTTTTGGTCTTATTCCAGTTCAACAACAGGAAACGACAAGCTGCTTTTA
AGTATTACTTAGAAACTATCCAGTCATTGGAACTTCCAGCGAGAATGATA
CTCAGGCCAGCTCATATTAATCATATTAAACCGTTTGTTCAGTACCTGGA
GGAACTGTTCACTTCCCCTATTCCAGGACTTCGATTGGACCTTAGAACAG
GGTTTGAACCGTTTATGTCGCCTGAGCAGACCATCAGGCTGATTTCAGTC
CTGAAGAATGTTCCCGCTCTGAGGGCTCTGGATATGTCAAGTTCAAATCT
AACGCCGTCATCGCTCCAGCCACTTGTGCGGGGATTCCGACACATTTCCC
TGCTAGAAGAGCTGGATGTTTCGTGTAACACATTGGGTGATGACGGAATA
AGAGTCCTACAGTTTGGGCTGTCCAGTATTCCACACCTGGCTGTACTCCG
TCTTAGTTCAGTCGGCATGACAGCTGTGGGCATGTTATTCATGGCCCCCT
ACATGCGTCGCCTAACGAGACTGACAGAATTGGATGTAAGTGGAAATGGC
ATTGGTGACATTGGACTTGAAATCCTCACCGCCTTTCTCTTCTTCCTCAC
CGCCATGCAGGTGTTGACCGTGAGGAACACCGGTATCAGTCCCGCAGGCA
TACGCGCACTGGTCCCTGCACTCGCTAAGCTAAACGGGCTGATTAAGCTA
AATGTTAGTGACAATGCCATTGGAGACGATGGGCTGGAATGCCTTATTAA
CATTCTTCCCCTCCTCCCGGCCATGAGGGTGTTGGTGTTGAGAGAGATAC
GTATCAGTGACAAGGGAATATCAGCCCTGGTCAAAGCTCTGCCTCACCTG
CTGGAATTACAGGTTTTGGACGTGGGCTTTAACTACATCGGGGACTCAGG
CATTGTCTCACTTGTCCAAACACTCGGCCAGCCCCTCAGCTTGAAAACAG
AACAAACCCCACCTGGTGACAAGAGTCTGCCCACCGCTCCTCGTTACAAC
ACCAAGCTGCGTGAGCTACACATGGGACACAATACAGGAGTAACAGGAGC
CGGATTGGGGAGGGTCGCACGGCACATCCACGCACTGCCGGCACTGACCA
AGCTGGACATGTCTGGTTTCCAATTATCACATGCGTACCTGCGCGACACC
GCTGCCATGGACTTGGCAGGGGCTCTGCCCAAACTCCCTGTCCTGGAGTG
GCTGATGCTAGGAAACATCTGTATGGACCGTGCAGGGTTCCAGGCTGTAG
TGCAGGCTACGGAGGAACACACAACACTTGTAAAACTGCAGTAAGTCTTA
GGTCTAGTTAACATGTCCAACCAGTACGTGGATAAAATGTACATCTCGAA
ACGCCGTCAGTTGATTCTGTACGTACCGGGTTAGTGCAGTGACACATCTA
TCTGATGAATTTATTCCCCGATACACCATTGAATTGGACCCTCATCTCGG
TTTTACTACAATCAAGTGACAAGAACACATCGTCTTGGTGCTTTCACATG
ACTTTTATTGAATGTTCATTCTTAAATCTGCAGGTATGACAGGAGTGGAC
TTCCCCCAGGAGCGGACACCAGCGCTAGATAT

Coding sequence (CDS) from alignment at Sc0000016:1020251..1022182+

>transcript:BL90291_cuf0 ID=transcript:BL90291_cuf0|Name=transcript:BL90291_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3378bp|location=Sequence derived from alignment at Sc0000016:1020251..1022182+ (Branchiostoma lanceolatum)
CGATATGCCGCTCATGCTCTGGCTGTGGTGAACCAAAACATTGTTGAGCT
GCTGCAGCTCACCTCCATTTACAACGCGCTTCAACTCAGTAACGTGCTCC
AGTTCACGTGTGGCTGTGACTCACGGGCGGCGCAAAGTGTGTTGGAAGAA
TTGATCAGTCTGAGCAGCAAAGAGTTTGTGAATTTACAACCAGAGCACCT
TGATAAACCGGGTTGGCTGTTACCGGTGCCTGTGTCGAGACGGATGTGGG
CATGCGCTGAAACGTACAGACAATTCGTTCTACTCTGCCTGGATATCATT
ACTGAAAGACAAGAGTCAGACGTACTGAACGCTGTCAGCAGAGCCTTGCC
ATTTTTGGTCTTATTCCAGTTCAACAACAGGAAACGACAAGCTGCTTTTA
AGTATTACTTAGAAACTATCCAGTCATTGGAACTTCCAGCGAGAATGATA
CTCAGGCCAGCTCATATTAATCATATTAAACCGTTTGTTCAGTACCTGGA
GGAACTGTTCACTTCCCCTATTCCAGGACTTCGATTGGACCTTAGAACAG
GGTTTGAACCGTTTATGTCGCCTGAGCAGACCATCAGGCTGATTTCAGTC
CTGAAGAATGTTCCCGCTCTGAGGGCTCTGGATATGTCAAGTTCAAATCT
AACGCCGTCATCGCTCCAGCCACTTGTGCGGGGATTCCGACACATTTCCC
TGCTAGAAGAGCTGGATGTTTCGTGTAACACATTGGGTGATGACGGAATA
AGAGTCCTACAGTTTGGGCTGTCCAGTATTCCACACCTGGCTGTACTCCG
TCTTAGTTCAGTCGGCATGACAGCTGTGGGCATGTTATTCATGGCCCCCT
ACATGCGTCGCCTAACGAGACTGACAGAATTGGATGTAAGTGGAAATGGC
ATTGGTGACATTGGACTTGAAATCCTCACCGCCTTTCTCTTCTTCCTCAC
CGCCATGCAGGTGTTGACCGTGAGGAACACCGGTATCAGTCCCGCAGGCA
TACGCGCACTGGTCCCTGCACTCGCTAAGCTAAACGGGCTGATTAAGCTA
AATGTTAGTGACAATGCCATTGGAGACGATGGGCTGGAATGCCTTATTAA
CATTCTTCCCCTCCTCCCGGCCATGAGGGTGTTGGTGTTGAGAGAGATAC
GTATCAGTGACAAGGGAATATCAGCCCTGGTCAAAGCTCTGCCTCACCTG
CTGGAATTACAGGTTTTGGACGTGGGCTTTAACTACATCGGGGACTCAGG
CATTGTCTCACTTGTCCAAACACTCGGCCAGCCCCTCAGCTTGAAAACAG
AACAAACCCCACCTGGTGACAAGAGTCTGCCCACCGCTCCTCGTTACAAC
ACCAAGCTGCGTGAGCTACACATGGGACACAATACAGGAGTAACAGGAGC
CGGATTGGGGAGGGTCGCACGGCACATCCACGCACTGCCGGCACTGACCA
AGCTGGACATGTCTGGTTTCCAATTATCACATGCGTACCTGCGCGACACC
GCTGCCATGGACTTGGCAGGGGCTCTGCCCAAACTCCCTGTCCTGGAGTG
GCTGATGCTAGGAAACATCTGTATGGACCGTGCAGGGTTCCAGGCTGTAG
TGCAGGCTACGGAGGAACACACAACACTTGTAAAACTGCAGTATGACAGG
AGTGGACTTCCCCCAGGAGCGGACACCAGCGCTAGATATCGATATGCCGC
TCATGCTCTGGCTGTGGTGAACCAAAACATTGTTGAGCTGCTGCAGCTCA
CCTCCATTTACAACGCGCTTCAACTCAGTAACGTGCTCCAGTTCACGTGT
GGCTGTGACTCACGGGCGGCGCAAAGTGTGTTGGAAGAATTGATCAGTCT
GAGCAGCAAAGAGTTTGTGAATTTACAACCAGAGCACCTTGATAAACCGG
GTTGGCTGTTACCGGTGCCTGTGTCGAGACGGATGTGGGCATGCGCTGAA
ACGTACAGACAATTCGTTCTACTCTGCCTGGATATCATTACTGAAAGACA
AGAGTCAGACGTACTGAACGCTGTCAGCAGAGCCTTGCCATTTTTGGTCT
TATTCCAGTTCAACAACAGGAAACGACAAGCTGCTTTTAAGTATTACTTA
GAAACTATCCAGTCATTGGAACTTCCAGCGAGAATGATACTCAGGCCAGC
TCATATTAATCATATTAAACCGTTTGTTCAGTACCTGGAGGAACTGTTCA
CTTCCCCTATTCCAGGACTTCGATTGGACCTTAGAACAGGGTTTGAACCG
TTTATGTCGCCTGAGCAGACCATCAGGCTGATTTCAGTCCTGAAGAATGT
TCCCGCTCTGAGGGCTCTGGATATGTCAAGTTCAAATCTAACGCCGTCAT
CGCTCCAGCCACTTGTGCGGGGATTCCGACACATTTCCCTGCTAGAAGAG
CTGGATGTTTCGTGTAACACATTGGGTGATGACGGAATAAGAGTCCTACA
GTTTGGGCTGTCCAGTATTCCACACCTGGCTGTACTCCGTCTTAGTTCAG
TCGGCATGACAGCTGTGGGCATGTTATTCATGGCCCCCTACATGCGTCGC
CTAACGAGACTGACAGAATTGGATGTAAGTGGAAATGGCATTGGTGACAT
TGGACTTGAAATCCTCACCGCCTTTCTCTTCTTCCTCACCGCCATGCAGG
TGTTGACCGTGAGGAACACCGGTATCAGTCCCGCAGGCATACGCGCACTG
GTCCCTGCACTCGCTAAGCTAAACGGGCTGATTAAGCTAAATGTTAGTGA
CAATGCCATTGGAGACGATGGGCTGGAATGCCTTATTAACATTCTTCCCC
TCCTCCCGGCCATGAGGGTGTTGGTGTTGAGAGAGATACGTATCAGTGAC
AAGGGAATATCAGCCCTGGTCAAAGCTCTGCCTCACCTGCTGGAATTACA
GGTTTTGGACGTGGGCTTTAACTACATCGGGGACTCAGGCATTGTCTCAC
TTGTCCAAACACTCGGCCAGCCCCTCAGCTTGAAAACAGAACAAACCCCA
CCTGGTGACAAGAGTCTGCCCACCGCTCCTCGTTACAACACCAAGCTGCG
TGAGCTACACATGGGACACAATACAGGAGTAACAGGAGCCGGATTGGGGA
GGGTCGCACGGCACATCCACGCACTGCCGGCACTGACCAAGCTGGACATG
TCTGGTTTCCAATTATCACATGCGTACCTGCGCGACACCGCTGCCATGGA
CTTGGCAGGGGCTCTGCCCAAACTCCCTGTCCTGGAGTGGCTGATGCTAG
GAAACATCTGTATGGACCGTGCAGGGTTCCAGGCTGTAGTGCAGGCTACG
GAGGAACACACAACACTTGTAAAACTGCAGTATGACAGGAGTGGACTTCC
CCCAGGAGCGGACACCAGCGCTAGATAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL90291gene:BL90291Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL90291_cuf0-E1BL90291_cuf0-E1-1564476830-128824Branchiostoma lanceolatumexon
BL90291_cuf0-E2BL90291_cuf0-E2-1564476830-128826Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL90291_cuf0transcript:BL90291_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000016genomeSc0000016:1020251..1022182 +
Properties
Property NameValue
Transcript idBL90291_cuf0
Biotypeprotein_coding