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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90752_cuf2 >transcript:BL90752_cuf2-protein ID=transcript:BL90752_cuf2-protein|Name=transcript:BL90752_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=580bp
MENSISEHSTEEICVGHPGMEMECMDHPGKESDSRETQITDMGLQETCDV
NFPQPDDKSTSQVQESRGNMRNILSLYSVQATGMQAVKHTGKKPYMCRQC
GSRTPRKCDLSRHMRTDTEELSHKAHLEGHTATKHTGEKPYMCESCGYRT
AKKDHLSSHMRTHTGQKPYKCDRCDYSAAHKAVLEIHIATKHTGEKPYMC
GECGYRTAYRAALYQHMRTHTGEKPYKCDLCDYSAAQKSTLDLHLRKHTG
EKPFMCEECGFRATKKSYLSRHMRTHTGEKPYKCDQCDYFTANKDNLRRH
MRTHTGERPYKCVQCDYSAAEKGTLSSHMRMHTGERPYKCDQCDYSAALK
GNLSQHVRKHTRHLEGHTATKHTVKKPYMCESCGYRTAKKDHLSSHMRTH
TGQKPYKCDRCDYSAAHKAVLEIQIATKHTGEKPYMCEECGYRTAYRAAL
YQHMRTHTGEKPFKCDLCDYSAALKSTLDQHLRKHTGEKPFMCEECGFRA
TKKSYLSRHMRTHTGEKPYKCDQCDYFTANKDNLCRHMRTHTGERPYKCG
QCDYSAAQKSNLDRHLRSTHECIGTSELSS Run BLAST on NCBI mRNA from alignment at Sc0000000:1043190..1046070+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90752_cuf2 ID=transcript:BL90752_cuf2|Name=transcript:BL90752_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2881bp|location=Sequence derived from alignment at Sc0000000:1043190..1046070+ (Branchiostoma lanceolatum)
CAAAGCTGAGCAAGTCCCGATTTACGTGTTGGGAAAAAACACACCAAAGA
AGCAGGTAAGGCTTATAAAAGTGCATCCAAGTATTCTGATACGGAGCGTA
AGAGTTTGAGATCATTTCTGTGGAAAGAGGATCACCGTAAGATGATAATT
TATAGTCATTTTCTCGATGTCAACATGCTAGAAATGATGGGGGAGGGGGG
CGAAGCCAAACATACGTGCGACCCTCGCCACCCATACTAACAGGTTTGTT
TTCGTCCTTTTTCGAAATATGTGACGTCAGCTTGGATCATATTAGCTTCC
AGGTCCCAATCACTATAATAATCCTTTGTCAGATCCAAAAGAAATATTTT
TTGTACTTAACGTTACATACCCTCTACCCCGTAGAGCAGGAATGGAAAAT
TCCATCAGTGAACATTCTACTGAAGAAATTTGTGTCGGACATCCTGGGAT
GGAGATGGAATGTATGGATCACCCTGGGAAGGAGAGTGACAGCAGGGAGA
CCCAGATAACAGACATGGGCCTACAGGAAACGTGTGATGTGAACTTTCCC
CAACCTGACGACAAATCAACCTCACAGGTACAGGAGAGCAGAGGCAATAT
GAGAAATATCCTGTCCCTTTACTCAGTCCAGGCTACGGGAATGCAGGCGG
TTAAACACACTGGCAAGAAACCCTACATGTGTAGGCAGTGTGGGTCAAGG
ACGCCTCGAAAGTGTGATTTATCCCGACATATGAGAACTGATACAGAAGA
ATTATCTCATAAAGCTCATTTGGAGGGGCATACAGCAACAAAACACACAG
GTGAGAAACCCTACATGTGTGAGTCGTGTGGGTACAGGACAGCGAAGAAG
GACCACTTATCCAGTCACATGAGAACCCACACAGGACAGAAACCCTACAA
GTGTGACCGGTGCGACTATTCTGCTGCACACAAAGCTGTTTTGGAGATAC
ATATAGCAACAAAACACACTGGCGAGAAACCCTACATGTGTGGAGAGTGT
GGGTATAGGACAGCTTATAGGGCTGCTTTGTATCAACACATGAGAACCCA
TACAGGAGAGAAACCCTACAAGTGTGACCTGTGCGACTATTCTGCAGCAC
AGAAATCCACTTTAGACCTACATCTAAGAAAACACACTGGTGAGAAACCC
TTCATGTGTGAAGAGTGTGGCTTCAGGGCAACTAAGAAGTCTTACTTATC
CCGACATATGAGAACCCATACTGGAGAAAAACCCTACAAATGTGACCAGT
GTGACTATTTTACAGCAAATAAAGATAACTTACGCCGACATATGAGAACC
CATACTGGAGAAAGACCCTACAAATGTGTCCAGTGTGACTATTCTGCAGC
AGAAAAGGGTACCTTATCCAGTCATATGAGAATGCATACAGGAGAAAGGC
CCTACAAGTGTGATCAGTGCGACTATTCTGCTGCACTGAAAGGTAACCTA
TCTCAACACGTGAGAAAACATACACGTCATTTGGAGGGGCATACAGCAAC
AAAACACACTGTCAAGAAACCCTACATGTGTGAGTCGTGTGGGTACAGGA
CAGCTAAGAAGGACCACTTATCCAGTCACATGAGAACCCACACAGGACAG
AAACCCTACAAGTGTGACCGGTGCGACTATTCTGCTGCACACAAAGCTGT
TTTGGAGATACAAATAGCAACAAAACACACTGGCGAGAAACCCTACATGT
GTGAAGAGTGTGGGTATAGGACAGCTTATAGGGCTGCCTTGTATCAACAC
ATGAGAACCCATACAGGAGAGAAACCCTTCAAGTGTGACCTGTGCGACTA
TTCTGCAGCACTGAAATCCACTTTAGACCAACATCTAAGGAAACACACTG
GTGAAAAACCCTTCATGTGTGAAGAGTGTGGCTTCAGGGCAACTAAGAAG
TCTTACTTATCCCGACATATGAGAACCCATACGGGAGAAAAACCCTACAA
ATGTGACCAGTGTGACTATTTTACAGCAAATAAAGATAACTTATGCCGAC
ATATGAGAACCCATACTGGAGAAAGACCCTACAAGTGTGGCCAGTGTGAC
TATTCTGCAGCGCAGAAATCGAATTTAGACAGACATCTTAGAAGCACCCA
TGAATGTATCGGTACAAGTGAACTGTCAAGCTAAACTAAGCAAGAAAGAC
CTACGGATTTATAAAAGAATGTGACTATTTTGCTGCACAAAATATCTTTA
GCAACAACAAGCATACCTTGTCCTAAACTATGTTTGAACCCTTCAACCTT
CTGTTTGTAGTAACTGTTTTGTAAGATCCAGGATACATGTACAGGCAGAT
GTACTGGTTAGTCTATGTAGAAGACATATGAGTGTTAAGCATCTTCACGG
ATTCCATGATTTATGATTTACACGTGAGGTATTTAGAAAATAACGTAAGT
CTCTCCAAGATTTGCCCAAGTAAAATGAGTGTAAACAAACCCAAATGTGT
TGGTTATGTTTTAAGATACTTGAATGTTGAAATGTTACATACTAGATTAA
TGCTTAACATTTGGAGGGAACGATACACAATAGGAGATACCAGCAGTTGA
CCCAGGAGTGGAATTTGGTCACATATATGTTGATGAATATATATGTGATG
GTTTTAGAGCTGAAGAAGAAATACCTTTTTTGTCAGAGTAATGAAAACAA
GCTCTTTCTAAATAAGTGATGAAGGGGCGGCAACTGTTCGTATTTTCGTG
CATTTTTCGTTATCAATAAGTCCACCGTTCTAAAGCTAGCGTTCTTTGTA
CCTGGCATGTACACATTGTAGCTGGGGCGCAGAGTTGTAGCTCGGGCGAC
CTTCGGAATTCTCGGGTATGGGGTTCAGAGGTTACGTAAAGTACGCCATA
AAACCACTCAAATAACACATGATATGCCAAC Coding sequence (CDS) from alignment at Sc0000000:1043190..1046070+ >transcript:BL90752_cuf2 ID=transcript:BL90752_cuf2|Name=transcript:BL90752_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1743bp|location=Sequence derived from alignment at Sc0000000:1043190..1046070+ (Branchiostoma lanceolatum)
ATGGAAAATTCCATCAGTGAACATTCTACTGAAGAAATTTGTGTCGGACA
TCCTGGGATGGAGATGGAATGTATGGATCACCCTGGGAAGGAGAGTGACA
GCAGGGAGACCCAGATAACAGACATGGGCCTACAGGAAACGTGTGATGTG
AACTTTCCCCAACCTGACGACAAATCAACCTCACAGGTACAGGAGAGCAG
AGGCAATATGAGAAATATCCTGTCCCTTTACTCAGTCCAGGCTACGGGAA
TGCAGGCGGTTAAACACACTGGCAAGAAACCCTACATGTGTAGGCAGTGT
GGGTCAAGGACGCCTCGAAAGTGTGATTTATCCCGACATATGAGAACTGA
TACAGAAGAATTATCTCATAAAGCTCATTTGGAGGGGCATACAGCAACAA
AACACACAGGTGAGAAACCCTACATGTGTGAGTCGTGTGGGTACAGGACA
GCGAAGAAGGACCACTTATCCAGTCACATGAGAACCCACACAGGACAGAA
ACCCTACAAGTGTGACCGGTGCGACTATTCTGCTGCACACAAAGCTGTTT
TGGAGATACATATAGCAACAAAACACACTGGCGAGAAACCCTACATGTGT
GGAGAGTGTGGGTATAGGACAGCTTATAGGGCTGCTTTGTATCAACACAT
GAGAACCCATACAGGAGAGAAACCCTACAAGTGTGACCTGTGCGACTATT
CTGCAGCACAGAAATCCACTTTAGACCTACATCTAAGAAAACACACTGGT
GAGAAACCCTTCATGTGTGAAGAGTGTGGCTTCAGGGCAACTAAGAAGTC
TTACTTATCCCGACATATGAGAACCCATACTGGAGAAAAACCCTACAAAT
GTGACCAGTGTGACTATTTTACAGCAAATAAAGATAACTTACGCCGACAT
ATGAGAACCCATACTGGAGAAAGACCCTACAAATGTGTCCAGTGTGACTA
TTCTGCAGCAGAAAAGGGTACCTTATCCAGTCATATGAGAATGCATACAG
GAGAAAGGCCCTACAAGTGTGATCAGTGCGACTATTCTGCTGCACTGAAA
GGTAACCTATCTCAACACGTGAGAAAACATACACGTCATTTGGAGGGGCA
TACAGCAACAAAACACACTGTCAAGAAACCCTACATGTGTGAGTCGTGTG
GGTACAGGACAGCTAAGAAGGACCACTTATCCAGTCACATGAGAACCCAC
ACAGGACAGAAACCCTACAAGTGTGACCGGTGCGACTATTCTGCTGCACA
CAAAGCTGTTTTGGAGATACAAATAGCAACAAAACACACTGGCGAGAAAC
CCTACATGTGTGAAGAGTGTGGGTATAGGACAGCTTATAGGGCTGCCTTG
TATCAACACATGAGAACCCATACAGGAGAGAAACCCTTCAAGTGTGACCT
GTGCGACTATTCTGCAGCACTGAAATCCACTTTAGACCAACATCTAAGGA
AACACACTGGTGAAAAACCCTTCATGTGTGAAGAGTGTGGCTTCAGGGCA
ACTAAGAAGTCTTACTTATCCCGACATATGAGAACCCATACGGGAGAAAA
ACCCTACAAATGTGACCAGTGTGACTATTTTACAGCAAATAAAGATAACT
TATGCCGACATATGAGAACCCATACTGGAGAAAGACCCTACAAGTGTGGC
CAGTGTGACTATTCTGCAGCGCAGAAATCGAATTTAGACAGACATCTTAG
AAGCACCCATGAATGTATCGGTACAAGTGAACTGTCAAGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:1043190..1046070 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90752_cuf2 |
| Biotype | protein_coding |
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