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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90756_cuf2 >transcript:BL90756_cuf2-protein ID=transcript:BL90756_cuf2-protein|Name=transcript:BL90756_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
MQVDQIVEKLKVLNDDEIQKVRHLFNKKLGGVATDKIFLEAHRIYQDEQD
AFRELEEDLWLDKEEDEAFERLVKDLETGNDPYKEDNKTLYGIGQFASSV
TALPKDEQELVRGLIINRYGEDLGKRLLGKMAEINNHVN Run BLAST on NCBI mRNA from alignment at Sc0000167:478994..484715+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90756_cuf2 ID=transcript:BL90756_cuf2|Name=transcript:BL90756_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5722bp|location=Sequence derived from alignment at Sc0000167:478994..484715+ (Branchiostoma lanceolatum)
TCTAGACAGGCACGAACACGGATAGGGTCACACCCAGGCTTGTCCGTCAC
AGTATTTTGACGAGATTTCAAAAGATTGACACCGAACAGGGGACACCGCG
GCGATATGAGGGCTGCTGTTACGTTTCTTGCTCTGATTTGCGTGCTGAGA
GACGTCTATAGCGCTCCTGCTGNTTCTTGCTCTGCTTTGCGTGCTGAGAG
ACGTCTATAGCGCTCCTGCTGGCCAAGGGGAGAAGCAACGTAAGTAGAAC
AACGGCTTGGTAAGAAGTGTATAACCCTTTGACACTATTAGTGGTGTGGT
TAGTTTAAAGAGATTAAAATGCGCACTCATATTGTCTGAATAGTAAAGTA
GATTTCTCGTTTACAACTGTTCAAGTTTGATAACGTTATATTTAATGTTG
ATTTTACTAACTTTTCAATGAAAGGAAACATAACGTAGTCGTATCGTTTG
ACCTTGTACTGACCTTGACTTCAAGCTGTAATCGTGGCGGCCATCTTGTT
TGTTGACTGCCTCCATGTTGACTGCCTGCATGGCCTTTCCCGTGTTTGTA
GTTATAAACCAACTGGGTGAGAAATTGAAGTTCAGCGAAAATGAGGAGGA
AGTTGTCGAAGAACTGATCAACGACGAGAAGGGCAAGACGGACAACGAAA
ACAATAGTAAGTTCCGACTATAAGTTACCATTGTTGCATAAACTAAGAGA
CACAAACTGCAATCTTTCGAACAACACACGATCTTCTTATGATCGGTCCT
GATGATTTGTCTGTTCTTTAGATCTCCAGTTCCGGATGCAAGTGGATCAA
ATTGTGGAAAAATTGAAAGTTCTGAACGACGACGAGATACAGAAAGGTGG
GATATTAACCATATGCCGTTTGCTTTTTTTACCGGCTGTGTGAATACTTA
TGTCTGGACAAGGGGTTGGCCTGGTTGTCGTGGTTGTCGTGGTTGTCGTG
GTAGGATTGTGATTATATCTAGAACGTGGGCAGGAGTTGCAACCATGAAG
TCGTTTGAGATGCACGTCATTTGAAGGCCTGCTAGCGTTTTTTCACGGTA
CTGCAAGTGGAACAACCGTTTCATATCCTCTGTTCTAAACATGCCATGGT
CTTGATTTTTAGATGACAGGTGTTATGTACTGTGTTCCGTGGTGTAGGGT
TGCGCCCTCTAGAAACTTGTTGAGGAACTGCAGCGGTGTGATTTATGGCA
GAAAGCATTGCACAGAGCAAAAAAATGAATCTAACAAGACGTCGGTTTTC
CGTTTCAGTGAGACACCTTTTCAACAAGAAATTAGGAGGCGTAGCAACAG
ACAAGATCTTCTTGGAGGCACACAGAATCTACCAAGACGAACAGGATGGT
AATTACCACATTCCATTCTTGAACTTTCTGAACATCATGTCACGACCTCT
CTCTTTGATCCCCTACTTGTCATCTTAGCCATTATAGTGAAGTGAAGTGA
TAACAATGCCAATTGTGACTAAGGTCAGATTGGCTTATAGCTTGACTATT
GGATAGTAACCTCTATGTTCATTGGGACACAACTAATCATAGATATTTCG
AGGCGACAGGAAGTCATCACGAAGCTAACAGGATTGATGGAGCAAACTGA
ATTGTAGCTGTAAGGAGGTCAGAGGTCAGACGTGCAAACCTTATTTTGGC
TGTGCAACTGTCCTTACAGTGGAGATTACCTCCTTGTGTGATGTTTTGCA
CAAGTTATTCAAGTAGAGAGCAAGATTTGCCAACCAGCTTGTAGCGTCCC
CCGTCTCTGTTGAAGAATATGAATGAATGAATGAATCAATGAATAGTTTA
TTCATGTAAAACCTGGCAGCCGAGCGGCTGAAGTGACTTTTACTTGCACC
GGTTTAAGATTACACTATCATACTGCACAAATTCTGTAGTATAAAGATTA
CTAACACAGACATCAGGGTATGCAGTTGATTTGATCATGAGCAGTCAATT
ACGTTTGGGTTACAACATGTTATTGTTCGTTGTCCAACAGTCTCAGCAGT
GGTGGTATCGCCAGTTTTTCTAGGTTTCGGCCTTGATCCTGTCGTCGTGT
GTTAGGCAGGCAATAGTGCTAATATATTGGACACTGCAAAACCACACAGT
AAACATTACAAAACTAGCAGATAACAAGTTAGATAGCTCATTTCTTTTTC
GAAATGAACCAGCTGCAGTGGCATGGCAAATAAACTCTACACCAGGTTTT
CCTTCTATGCCTCCCTTTGGAATTAACCATATTTACACATCCAAGGGCGA
TCTGACACGCGCGTTTCTGTACCCCGCAATATTTGTAAGTTGTTAATTGT
AAGTCCGTGGTGCCATACTGCTGCACATTCAAGGATCAGCCTTATAAAGC
CAAAGGGAACAAACAATCTATAGTCTATTTCATTAATTAATGATATCAGA
TTCAGAGATGAGAAAAAATAGCGCAACGATTGTTTTCTTTACCCTGCAAC
TAGCATTCAGAGAATTAGAAGAGGACCTGTGGTTGGACAAAGAGGAAGAC
GAAGCGTTTGAAAGACTTGTGAAAGATTTGGAGACGGGGAATGACCCTTA
TAAAGAAGGTAACATAGCATCACTATTTCCAGGATCTTTATTTCATACAT
ACAAACACACACGCACGCACGCACACACACACACACACACACACACACAC
ACACACACACACAGATTTGTCTTCGTACATCTGGCAAACCCATCCGGGAA
CTTGCATGGAACCCTTGTCAGAAGTGCTAGCCCTTTGTGGTAGCCAGTAC
CCACTATCTCTCACGGCCAACATAACCTTATGTAGAAACGATGAAAAAGC
ACGGGTACTATTTAGAATACAACACAGTGAACAAGCTCTCATACCGAACC
CATTATGATCAAACACTATCATAGACACGTGGGCCATGCTATTTGAGTGT
TTCATTGTCGTCTGATCACTTTCAGTACGATTTGTACCAGCTTAACGTAA
CATTCCTCTTTATGCCTCATAATCAACACAAGTTACATATCCTCACAGAC
AACAAGACTCTGTATGGAATAGGACAGTTTGCTAGTTCTGTGACTGCCCT
GCCTAAAGATGAACAGGAACTAGGTGAGTTGATTCTTAACTGCAAGTACA
TGTAACATTATATGATACCTATGTCTGAAAGCGACAGACTGTTTCTGTGC
ACACTTGCTTATATATACAGACTATCTATACATGTTCAACCGCCCGGTTG
TTGCCGCCATGTTGACTTCTAGCAGCGACGTGGGCAACCTACAACAACTA
ACACCACGTTTGGAAATACTTCCTATTCTAGCTCCGGTTTAAAACCATGA
TCGCTTCCCTGCAGAATACTCTAAAACAGAAGCAATCGGCCCGCAACACG
CTGGCGACCTCGCTGCAACCGGGCAATTTGACAGAGTTGTCAAAGAATTT
CATCGATTACAGANACTAGTAGTACTTGCTTATGTATGCAGACCATCTAT
ACATGTTCAACCGCCCGGTTATTGCCGCCATGTTGACTTCTATAGCAGCG
ACGTGGGCAACTTACAGCATCATGCATGCATAGAAAATGCTGTAACTAAC
ACCACGTTTGGAAATACTTCCTATTCTAGCTCCGGTTTAAAACTCTGATC
GCTTCCCTGCAGAATATTCTAAAACAGAAGCAATCGGCCCGCAACACGTT
GGTGACCTCGCTGCAACCGGGCAATTTGACAGAGTTGTCAAAAAATTTCA
TCGATTACAAACGAATCGCTTTACGCTTTATGTGTTTAGTTGCCTTTTAA
GTCATACTTGCACGTTTTGAATTAAATTCGGATTTCCCATTATGGGTCAA
CGGTAACACAAATCCAATTTAGGACGCAGTCGCCAACGTGTCGCGGGTCC
AGTGAGATGGGGGCTTGTTCAAATAATCGGCCTCTTTTCGTTGTCAACGA
CTTCCCAACAAAACTGGATAAAATGTTATAGCATGTAACAACTAAAAGCA
GAAAGAAACTTTGACAGTGCAAAGAGTTCATACATTTCTTAATTGGGCAT
TGCTATGCCGCCATGATCCCGACCGGAACCAAATGTGCCGTCTAGTTCAA
AGAAGTACATAATGTGCGCAATCTTCAGTTGGACTTTGGTGCAAGTAATC
ATTGAAAAAAAAAAACTCGTTGGAAGAAAACAACAAATGTTCCTCACTAT
GGTCTCTTCCTTCATCATCGACATATCATTCAGCATTAGGCGGTGATTCG
ATCCCTTTGATGCAGACTTTGCCCAATAACTGGTAGGTAGCGCAATTACG
CAATATGCTTTTTTCGAAATGGATGCTCTTCTAAAACCGCTATTCTTGTG
ATGGCTGATTTTCCGAGTAGCGGGAGAGACAAAAAGGGGCAAGCATATAT
GAAACAAATTACAGTTACTACCCGTCCCATGAAAATGGGAGGTATAGTTT
TTGGGCCTGATATGTGGTATGTTGGTAGGTATTGTGTCGATTTTGGGGCT
CCTGGTGGCCAGCCTTGGTACTGCAGCAGAACGTCCGGTTTTCTTATCTT
TGGTCCGGATGAAGATCTTAATGTAAGGTGGAAATGGTGTAGGTTTGGGC
CCATTAAGTATTGTATTTTTGTGAAAATCTTTGTAAGAGGATAATCGATC
GAAGGAACGTCAGATTTCCATGATATTCGGCATGAAGGTAGTTTAGACTA
AGGTGTACACAATCAGTTGTACGCAGATTATGCAAATAAGTACTTCATTT
GGATATCTAACGAGAAAGTTCTATGATTGCAGTGTTGTCCATAATTGGCA
TTTGATACGTGTAACTGAAGTAATACTTGGCAGGTGAAATATCAATAGAT
ACCAATTATGCAAGTAAGGACCTCATTTGCATGATTAATATGAAAATGTC
ATAATTCCGTTGTTGACAGTAAAATGCACCAGGGCCAGGTTCAGATTGAT
CACTTCCGCTTCCAGTGGTACTTCCGGTAGTCGCCATTTCCAACGGTCGT
CGCCATATCGCTGACCACTTGATGCCATATCCGAGCGTTTCATAACTTTT
CGGGGCTGACAAGAAGCAAAAACGTTCATTAAGCAACAGTTTGATTCCAA
ATGTACGCCAGTATAGTGATGAATAAAAAATGCTTTAAAAAAAGGGGCCA
CTGAACCCGAGTCAAAAGGCTATATCTTTAGTCCAACCAAATACGACAGG
AAACATCACGGTCAGTACAGTTAAAGTGACGGAGCGGACTGCAAAATCTG
CTGATACACGTAAAAACGACGGCCTATGACGAGACAGAAATTAGCAGCGT
ATCTGTATGACTTGTGCATGCTGGGAATATGGCACCTGCCACAAGTGGTT
AGGGGTGTGGATATTTTCTTATTACTTTTGCCGAGAAGGTTATGTTTCTT
TTGTGATACATGACAGAAATGTTATACTTAACTTGTTATGAAAACTCAAA
ATATCTAATGGAGGTATGAGGTCTCCGAGATCTAAGTTCACGAAAGTATC
AAGCGTGGTCCGTCGGGCTTCGCTCTGATTGAAATTCATTTTCTCATGCA
TTGCTTACGAGTTGAATGGAGCAAGAAGGCTTGTTTCAGATTCAGCCAGC
TAGCCATCACAGGCAAGTCTATATTGTAACAGTTTAATATGTTTGTACAA
AAATAAACAAGGGCATGGCCTTTCTTTTTTCTTCAGTTCGTGGCCTTATC
ATTAACAGGTATGGTGAAGACTTGGGCAAACGGCTGTTGGGCAAGATGGC
AGAAATTAACAACCATGTGAAC Coding sequence (CDS) from alignment at Sc0000167:478994..484715+ >transcript:BL90756_cuf2 ID=transcript:BL90756_cuf2|Name=transcript:BL90756_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2085bp|location=Sequence derived from alignment at Sc0000167:478994..484715+ (Branchiostoma lanceolatum)
ATGCAAGTGGATCAAATTGTGGAAAAATTGAAAGTTCTGAACGACGACGA
GATACAGAAAGTGAGACACCTTTTCAACAAGAAATTAGGAGGCGTAGCAA
CAGACAAGATCTTCTTGGAGGCACACAGAATCTACCAAGACGAACAGGAT
GCATTCAGAGAATTAGAAGAGGACCTGTGGTTGGACAAAGAGGAAGACGA
AGCGTTTGAAAGACTTGTGAAAGATTTGGAGACGGGGAATGACCCTTATA
AAGAAGACAACAAGACTCTGTATGGAATAGGACAGTTTGCTAGTTCTGTG
ACTGCCCTGCCTAAAGATGAACAGGAACTAGTTCGTGGCCTTATCATTAA
CAGGTATGGTGAAGACTTGGGCAAACGGCTGTTGGGCAAGATGGCAGAAA
TTAACAACCATGTGAACATGCAAGTGGATCAAATTGTGGAAAAATTGAAA
GTTCTGAACGACGACGAGATACAGAAAGTGAGACACCTTTTCAACAAGAA
ATTAGGAGGCGTAGCAACAGACAAGATCTTCTTGGAGGCACACAGAATCT
ACCAAGACGAACAGGATGCATTCAGAGAATTAGAAGAGGACCTGTGGTTG
GACAAAGAGGAAGACGAAGCGTTTGAAAGACTTGTGAAAGATTTGGAGAC
GGGGAATGACCCTTATAAAGAAGACAACAAGACTCTGTATGGAATAGGAC
AGTTTGCTAGTTCTGTGACTGCCCTGCCTAAAGATGAACAGGAACTAGTT
CGTGGCCTTATCATTAACAGGTATGGTGAAGACTTGGGCAAACGGCTGTT
GGGCAAGATGGCAGAAATTAACAACCATGTGAACATGCAAGTGGATCAAA
TTGTGGAAAAATTGAAAGTTCTGAACGACGACGAGATACAGAAAGTGAGA
CACCTTTTCAACAAGAAATTAGGAGGCGTAGCAACAGACAAGATCTTCTT
GGAGGCACACAGAATCTACCAAGACGAACAGGATGCATTCAGAGAATTAG
AAGAGGACCTGTGGTTGGACAAAGAGGAAGACGAAGCGTTTGAAAGACTT
GTGAAAGATTTGGAGACGGGGAATGACCCTTATAAAGAAGACAACAAGAC
TCTGTATGGAATAGGACAGTTTGCTAGTTCTGTGACTGCCCTGCCTAAAG
ATGAACAGGAACTAGTTCGTGGCCTTATCATTAACAGGTATGGTGAAGAC
TTGGGCAAACGGCTGTTGGGCAAGATGGCAGAAATTAACAACCATGTGAA
CATGCAAGTGGATCAAATTGTGGAAAAATTGAAAGTTCTGAACGACGACG
AGATACAGAAAGTGAGACACCTTTTCAACAAGAAATTAGGAGGCGTAGCA
ACAGACAAGATCTTCTTGGAGGCACACAGAATCTACCAAGACGAACAGGA
TGCATTCAGAGAATTAGAAGAGGACCTGTGGTTGGACAAAGAGGAAGACG
AAGCGTTTGAAAGACTTGTGAAAGATTTGGAGACGGGGAATGACCCTTAT
AAAGAAGACAACAAGACTCTGTATGGAATAGGACAGTTTGCTAGTTCTGT
GACTGCCCTGCCTAAAGATGAACAGGAACTAGTTCGTGGCCTTATCATTA
ACAGGTATGGTGAAGACTTGGGCAAACGGCTGTTGGGCAAGATGGCAGAA
ATTAACAACCATGTGAACATGCAAGTGGATCAAATTGTGGAAAAATTGAA
AGTTCTGAACGACGACGAGATACAGAAAGTGAGACACCTTTTCAACAAGA
AATTAGGAGGCGTAGCAACAGACAAGATCTTCTTGGAGGCACACAGAATC
TACCAAGACGAACAGGATGCATTCAGAGAATTAGAAGAGGACCTGTGGTT
GGACAAAGAGGAAGACGAAGCGTTTGAAAGACTTGTGAAAGATTTGGAGA
CGGGGAATGACCCTTATAAAGAAGACAACAAGACTCTGTATGGAATAGGA
CAGTTTGCTAGTTCTGTGACTGCCCTGCCTAAAGATGAACAGGAACTAGT
TCGTGGCCTTATCATTAACAGGTATGGTGAAGACTTGGGCAAACGGCTGT
TGGGCAAGATGGCAGAAATTAACAACCATGTGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000167 | genome | Sc0000167:478994..484715 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90756_cuf2 |
| Biotype | protein_coding |
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