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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90820_cuf2 >transcript:BL90820_cuf2-protein ID=transcript:BL90820_cuf2-protein|Name=transcript:BL90820_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=300bp
GYLQVVHPVFLAPYHVTYVAECVSTLLIILSAVYFANTALYFAIPFLFRS
LVGPMLPKMTKICQYIRCSFFGGMTKICTRNIWRKLKIDRGPFAFVCGCM
LFPCFCGLFYFYMLSIGITATAIASSSLSFKDAMCTTTSSEYKGTVKCEG
FHDRYPCLLVKVSYSQVLNGTATETEGFLYYDESEIAAGTRCSVDLCGGD
SDSGYWVELGRLTAFNKTYGKTNTTYSCLYNPSNTSQVLARRMASRELIF
MSFVWTSVVSLCIVVLCTWLSCCADKSDKKHSQTSASESHENDLGGFEGM Run BLAST on NCBI mRNA from alignment at Sc0000027:1301..4546+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90820_cuf2 ID=transcript:BL90820_cuf2|Name=transcript:BL90820_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3246bp|location=Sequence derived from alignment at Sc0000027:1301..4546+ (Branchiostoma lanceolatum)
GGCTACCTCCAAGTTGTCCACCCTGTTTTTCTAGCGCCATATCACGTTAC
GTATGTGGCTGAATGTGTCAGTACGTTACTAATAATTCTGTCTGCCGTGT
ATTTTGCAAATACTGCACTGTATTTCGCAATTCCCTTCCTATTTCGCAGT
TTAGTCGGACCCATGCTGCCCAAGATGACAAAGATCTGTCAATACATACG
CTGCAGCTTCTTCGGTGGTATGACAAAGATCTGTACAAGTAAGTTAACCG
TACCATTTCCCCGTGATTACTTCCGCCATGTTCTAACATGTAGGTCGTAT
ATATTGTAGACCTCTTGCTTGAGTGCGTCGGCCATGTTTGTAACGTTACA
ACATTTTCATTGTTATTTTGTCAGTCGGTTATTTGCGTTGTCCGTACTGT
GAAACGAACTTTGTGTGTGTTTCTAGTGTGACTATTTCCGGTACCGGCAT
ATAGTGGACAGTTCTGTCGCCCATTTTGTTACTACTTGCATATGACCCAG
TTTGCTCTAACTGTCAACAGGGAATATTTGGAGGAAGCTTAAGATAGACC
GAGGACCTTTTGCTTTCGTCTGTGGCTGTATGCTCTTTCCCTGTTTCTGT
GGCCTTTTTTACTTTTATATGTTATCAATTGGCATCACCGCCACTGCGAT
AGCATCTTCATCGCTATCATTCAAGGATGCCATGTGTACGACAACATCGT
CTGAGTATAAAGGTCAGTGTGCCAAGGCTATTCAAGATAGGGAAAATATG
AAAGCATAACTTGATTACATCTTAAGTTGCATTTTTGGCTTGCTGAGCGT
ACACATTGTGTCAAGGAAGTACTAGAATTGTATCTTATGATAATAACCTT
TATTGTACATTCATGCCCTATCACGAGCTAAGTACAGGAATACGGATACA
AAATACATGGTAACGATCATATGATGACACTGACAGGATTTCTAATACTA
ATCTAAAACAATGGTTCTAAAACTACTCTAATTCATAGGTTCGGCTTCTT
CTCGTCTCTTTGTGATGTTAGAAATACAAGTTGAGATGGACTTGTTTAAA
ATTGCATGGTCAAAACTTATAGGAAGTTATGATTGCCATGCATGTAAGTT
TTCGACTACACTGTGAATCGTACAAAAAAGCTGCAAAATGAGGAATGATA
TGTGCCGTAAATTACAAAAAATATCGAAAACGGATACTACTGTCGGAGAA
TGTCAATGTCAATTCCGAAATCAAAGGAGAAGATGTGACATAACAAAAAT
GTTGTAAAGAATTTATTGTTTGGTAAACCATGTCCTTTCTGTTCAGTCGT
TTGTTCAGCTTTCCTGACCAATAAGATTTCATAATGAAGGCAACTTTTTT
TGCACGCTCGCATCAGTTTTGGGGTGCTATATATCAATATAGCCTGATTA
CGATGACTAAAAACGATTTATGATGAAGTCAAATTACTAGTTACTTCATC
TCTAGGCACGGTGAAATGTGAAGGGTTTCACGATCGCTACCCCTGTCTGC
TCGTGAAAGTGAGCTACAGCCAGGTACTCAACGGCACGGCCACGGAAACT
GAAGGGTTTCTGTACTATGACGAGTCAGAAATAGCAGCCGGCACGGTTGG
TAACGTTACAATTACATGTAAAAGAATCGTAGAGATACGGGAATACTTAC
TTCATCATCTTTGCATCATCATGTTTTGTGCATGTGCATTATGTAGATAG
ACCTCTTTACCGTCACATTACCATCATTGTCGCCATTTTGAATCCTCCGG
GACCCTGCCAGATTTTGCGCCCAGACGAGGCTAAAGATGTTACTGTATAC
CATATACCAACGAGTACTCCCTACTTATAAGCCTGCATTACAGAATATGT
ATGCCCTCTTCGGTGGTACGTTTTCGCTCTCTAAGGTACGTGAAATACTG
CGGTACATGTGCATGTCACGTGTAGATAATATTGATGTGGACATTTTTGG
CTTGGTATTGGCCAGATTTTCATTAATTATTCACAGTTTCTATTATATGC
TATGTTGTTTTTATGCTTGTCACATTGACGTGAAACTCAGGAAAATCTTG
TGAGTTCATGAATTCGCTCAGCTCTTAAATACATTTGTTGTTGTATAGCG
GTGTTCTGTCGACCTTTGCGGCGGCGATTCGGACAGCGGATATTGGGTAG
AATTAGGAAGGCTAACAGCTTTCAACAAGACCTACGGCAAGACGAATACA
ACCTACAGCTGTCTGTACAACCCTTCAAATACATCTGTATGTCAATTATC
TTGTTTTATGAAGAATGCAATATAATCCATTCTACATTTATTTGAAGCCT
TCTTGTTTTATTTACATCTTATTGATTAGGTCTTGCATATTTTATAATTG
CTATATATATAACTTATTTGGTCCTAGCAAACTTTATTATGGTATATTTT
ATCTGATATAGTGGCCAACGTAACTATATTAGATATCAAAAGCGGTGTAT
CCTCTCCGACTGCGATGCGAGCCTTGTAATTTTGGGTTCTTTTAAAGAAT
TCTAAAATGATTCCAGATTCTCTATGTCATTTCACAGCAAGTGTTGGCGC
GAAGAATGGCCTCACGTGAGCTGATCTTCATGAGCTTTGTCTGGACTTCG
GTAGTTTCATTATGTATCGTAGTCTTGTGTACTTGGCTGTCTTGTTGTGC
TGATAAGTCAGACAAGAAACATTCACAAACAAGTGCAAGTGAGAGTCATG
AGAATGACTTGGGAGGATTTGAAGGAATGTGAACCGTATAATCTCGACAT
GTCCCAATGCGAACAAACATCTTCGAGAACAAGTTACTCTTGCACATGAA
TGATTTCTAATCATGAGAAAGATATAACTAAGTCTCCATACTTATCATAA
CTTTATAAGGAAGTGACAGAAACAGTGTAACTTGCTGGTGGTTTGACACA
TTTGCTGAAGTAGTTGGCACTTTCTATAACAAAACATAACAATCTAATAG
TAGATATTGAAGCATTTGCCTATTTGTAAATACATTCTGCTTTTGTAAAG
TATTACGCGAGAAGTTTTACCACCAATCCACAATAACTAGAATTACAATC
TATAGGCACTCCATCGTATTGTAATTACTGAACGTACGAATGCATCAAGT
AGTGTAATTGAATGTAGCAACAATTGTGAAAATATAGATTTATATCTACT
TTGGAAACTATAACTTGTCACGGTGAATCAGAAAGCAGCTGCTAAATTTG
TTACTTTGCTGAAAATGATAAAACGGCGTTTTCTGTTGAAATCAAT Coding sequence (CDS) from alignment at Sc0000027:1301..4546+ >transcript:BL90820_cuf2 ID=transcript:BL90820_cuf2|Name=transcript:BL90820_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4515bp|location=Sequence derived from alignment at Sc0000027:1301..4546+ (Branchiostoma lanceolatum)
GGCTACCTCCAAGTTGTCCACCCTGTTTTTCTAGCGCCATATCACGTTAC
GTATGTGGCTGAATGTGTCAGTACGTTACTAATAATTCTGTCTGCCGTGT
ATTTTGCAAATACTGCACTGTATTTCGCAATTCCCTTCCTATTTCGCAGT
TTAGTCGGACCCATGCTGCCCAAGATGACAAAGATCTGTCAATACATACG
CTGCAGCTTCTTCGGTGGTATGACAAAGATCTGTACAAGGAATATTTGGA
GGAAGCTTAAGATAGACCGAGGACCTTTTGCTTTCGTCTGTGGCTGTATG
CTCTTTCCCTGTTTCTGTGGCCTTTTTTACTTTTATATGTTATCAATTGG
CATCACCGCCACTGCGATAGCATCTTCATCGCTATCATTCAAGGATGCCA
TGTGTACGACAACATCGTCTGAGTATAAAGGCACGGTGAAATGTGAAGGG
TTTCACGATCGCTACCCCTGTCTGCTCGTGAAAGTGAGCTACAGCCAGGT
ACTCAACGGCACGGCCACGGAAACTGAAGGGTTTCTGTACTATGACGAGT
CAGAAATAGCAGCCGGCACGCGGTGTTCTGTCGACCTTTGCGGCGGCGAT
TCGGACAGCGGATATTGGGTAGAATTAGGAAGGCTAACAGCTTTCAACAA
GACCTACGGCAAGACGAATACAACCTACAGCTGTCTGTACAACCCTTCAA
ATACATCTCAAGTGTTGGCGCGAAGAATGGCCTCACGTGAGCTGATCTTC
ATGAGCTTTGTCTGGACTTCGGTAGTTTCATTATGTATCGTAGTCTTGTG
TACTTGGCTGTCTTGTTGTGCTGATAAGTCAGACAAGAAACATTCACAAA
CAAGTGCAAGTGAGAGTCATGAGAATGACTTGGGAGGATTTGAAGGAATG
TGAGGCTACCTCCAAGTTGTCCACCCTGTTTTTCTAGCGCCATATCACGT
TACGTATGTGGCTGAATGTGTCAGTACGTTACTAATAATTCTGTCTGCCG
TGTATTTTGCAAATACTGCACTGTATTTCGCAATTCCCTTCCTATTTCGC
AGTTTAGTCGGACCCATGCTGCCCAAGATGACAAAGATCTGTCAATACAT
ACGCTGCAGCTTCTTCGGTGGTATGACAAAGATCTGTACAAGGAATATTT
GGAGGAAGCTTAAGATAGACCGAGGACCTTTTGCTTTCGTCTGTGGCTGT
ATGCTCTTTCCCTGTTTCTGTGGCCTTTTTTACTTTTATATGTTATCAAT
TGGCATCACCGCCACTGCGATAGCATCTTCATCGCTATCATTCAAGGATG
CCATGTGTACGACAACATCGTCTGAGTATAAAGGCACGGTGAAATGTGAA
GGGTTTCACGATCGCTACCCCTGTCTGCTCGTGAAAGTGAGCTACAGCCA
GGTACTCAACGGCACGGCCACGGAAACTGAAGGGTTTCTGTACTATGACG
AGTCAGAAATAGCAGCCGGCACGCGGTGTTCTGTCGACCTTTGCGGCGGC
GATTCGGACAGCGGATATTGGGTAGAATTAGGAAGGCTAACAGCTTTCAA
CAAGACCTACGGCAAGACGAATACAACCTACAGCTGTCTGTACAACCCTT
CAAATACATCTCAAGTGTTGGCGCGAAGAATGGCCTCACGTGAGCTGATC
TTCATGAGCTTTGTCTGGACTTCGGTAGTTTCATTATGTATCGTAGTCTT
GTGTACTTGGCTGTCTTGTTGTGCTGATAAGTCAGACAAGAAACATTCAC
AAACAAGTGCAAGTGAGAGTCATGAGAATGACTTGGGAGGATTTGAAGGA
ATGTGAGGCTACCTCCAAGTTGTCCACCCTGTTTTTCTAGCGCCATATCA
CGTTACGTATGTGGCTGAATGTGTCAGTACGTTACTAATAATTCTGTCTG
CCGTGTATTTTGCAAATACTGCACTGTATTTCGCAATTCCCTTCCTATTT
CGCAGTTTAGTCGGACCCATGCTGCCCAAGATGACAAAGATCTGTCAATA
CATACGCTGCAGCTTCTTCGGTGGTATGACAAAGATCTGTACAAGGAATA
TTTGGAGGAAGCTTAAGATAGACCGAGGACCTTTTGCTTTCGTCTGTGGC
TGTATGCTCTTTCCCTGTTTCTGTGGCCTTTTTTACTTTTATATGTTATC
AATTGGCATCACCGCCACTGCGATAGCATCTTCATCGCTATCATTCAAGG
ATGCCATGTGTACGACAACATCGTCTGAGTATAAAGGCACGGTGAAATGT
GAAGGGTTTCACGATCGCTACCCCTGTCTGCTCGTGAAAGTGAGCTACAG
CCAGGTACTCAACGGCACGGCCACGGAAACTGAAGGGTTTCTGTACTATG
ACGAGTCAGAAATAGCAGCCGGCACGCGGTGTTCTGTCGACCTTTGCGGC
GGCGATTCGGACAGCGGATATTGGGTAGAATTAGGAAGGCTAACAGCTTT
CAACAAGACCTACGGCAAGACGAATACAACCTACAGCTGTCTGTACAACC
CTTCAAATACATCTCAAGTGTTGGCGCGAAGAATGGCCTCACGTGAGCTG
ATCTTCATGAGCTTTGTCTGGACTTCGGTAGTTTCATTATGTATCGTAGT
CTTGTGTACTTGGCTGTCTTGTTGTGCTGATAAGTCAGACAAGAAACATT
CACAAACAAGTGCAAGTGAGAGTCATGAGAATGACTTGGGAGGATTTGAA
GGAATGTGAGGCTACCTCCAAGTTGTCCACCCTGTTTTTCTAGCGCCATA
TCACGTTACGTATGTGGCTGAATGTGTCAGTACGTTACTAATAATTCTGT
CTGCCGTGTATTTTGCAAATACTGCACTGTATTTCGCAATTCCCTTCCTA
TTTCGCAGTTTAGTCGGACCCATGCTGCCCAAGATGACAAAGATCTGTCA
ATACATACGCTGCAGCTTCTTCGGTGGTATGACAAAGATCTGTACAAGGA
ATATTTGGAGGAAGCTTAAGATAGACCGAGGACCTTTTGCTTTCGTCTGT
GGCTGTATGCTCTTTCCCTGTTTCTGTGGCCTTTTTTACTTTTATATGTT
ATCAATTGGCATCACCGCCACTGCGATAGCATCTTCATCGCTATCATTCA
AGGATGCCATGTGTACGACAACATCGTCTGAGTATAAAGGCACGGTGAAA
TGTGAAGGGTTTCACGATCGCTACCCCTGTCTGCTCGTGAAAGTGAGCTA
CAGCCAGGTACTCAACGGCACGGCCACGGAAACTGAAGGGTTTCTGTACT
ATGACGAGTCAGAAATAGCAGCCGGCACGCGGTGTTCTGTCGACCTTTGC
GGCGGCGATTCGGACAGCGGATATTGGGTAGAATTAGGAAGGCTAACAGC
TTTCAACAAGACCTACGGCAAGACGAATACAACCTACAGCTGTCTGTACA
ACCCTTCAAATACATCTCAAGTGTTGGCGCGAAGAATGGCCTCACGTGAG
CTGATCTTCATGAGCTTTGTCTGGACTTCGGTAGTTTCATTATGTATCGT
AGTCTTGTGTACTTGGCTGTCTTGTTGTGCTGATAAGTCAGACAAGAAAC
ATTCACAAACAAGTGCAAGTGAGAGTCATGAGAATGACTTGGGAGGATTT
GAAGGAATGTGAGGCTACCTCCAAGTTGTCCACCCTGTTTTTCTAGCGCC
ATATCACGTTACGTATGTGGCTGAATGTGTCAGTACGTTACTAATAATTC
TGTCTGCCGTGTATTTTGCAAATACTGCACTGTATTTCGCAATTCCCTTC
CTATTTCGCAGTTTAGTCGGACCCATGCTGCCCAAGATGACAAAGATCTG
TCAATACATACGCTGCAGCTTCTTCGGTGGTATGACAAAGATCTGTACAA
GGAATATTTGGAGGAAGCTTAAGATAGACCGAGGACCTTTTGCTTTCGTC
TGTGGCTGTATGCTCTTTCCCTGTTTCTGTGGCCTTTTTTACTTTTATAT
GTTATCAATTGGCATCACCGCCACTGCGATAGCATCTTCATCGCTATCAT
TCAAGGATGCCATGTGTACGACAACATCGTCTGAGTATAAAGGCACGGTG
AAATGTGAAGGGTTTCACGATCGCTACCCCTGTCTGCTCGTGAAAGTGAG
CTACAGCCAGGTACTCAACGGCACGGCCACGGAAACTGAAGGGTTTCTGT
ACTATGACGAGTCAGAAATAGCAGCCGGCACGCGGTGTTCTGTCGACCTT
TGCGGCGGCGATTCGGACAGCGGATATTGGGTAGAATTAGGAAGGCTAAC
AGCTTTCAACAAGACCTACGGCAAGACGAATACAACCTACAGCTGTCTGT
ACAACCCTTCAAATACATCTCAAGTGTTGGCGCGAAGAATGGCCTCACGT
GAGCTGATCTTCATGAGCTTTGTCTGGACTTCGGTAGTTTCATTATGTAT
CGTAGTCTTGTGTACTTGGCTGTCTTGTTGTGCTGATAAGTCAGACAAGA
AACATTCACAAACAAGTGCAAGTGAGAGTCATGAGAATGACTTGGGAGGA
TTTGAAGGAATGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000027 | genome | Sc0000027:1301..4546 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90820_cuf2 |
| Biotype | protein_coding |
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