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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90907_cuf1 >transcript:BL90907_cuf1-protein ID=transcript:BL90907_cuf1-protein|Name=transcript:BL90907_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=370bp
AVYGCGHNSKRDKGYSYHRIPKMIESQGEKTRLLSEERRRVWLANINRSL
ADLTPSKSTFSRVCSLHFISGKPASLYSFTDPDWAPTQHLGHNKVDITLG
VARSVRAAERNNKRIKIEEDGYSTGGIIDPPSPVVPNIHVAAKCDAGCQT
ELTGEDIDRMQCTVQYLTEQQDNLKTQLLSLQINENSFSNRGDDKVRFYT
GLPNFLILMNVFQLVVSHVKCTSQNVISPFQQFILVLMRLRLSLSLQDIS
YRFGISLSTSCRIFDKWITAMNNRLSFLILWPQRTELRKTMPLVFKKNFG
NSVSVIIDCFEIFIDRPSSLIARAMTWSNYKHHNTVKFLIGISPQGCISF
ISKAWGGRVSDKYLTENCGI Run BLAST on NCBI mRNA from alignment at Sc0000252:223574..229090- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90907_cuf1 ID=transcript:BL90907_cuf1|Name=transcript:BL90907_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5517bp|location=Sequence derived from alignment at Sc0000252:223574..229090- (Branchiostoma lanceolatum)
GCAGTCTATGGCTGTGGCCATAATAGTAAACGAGATAAAGGGTACAGCTA
TCACAGGATTCCGAAGATGATTGAATCACAAGGGGAGAAAACAAGACTTC
TTTCAGAAGAGAGACGACGGGTATGGCTGGCAAATATCAACCGGTCGCTA
GCCGACCTGACGCCGTCCAAGTCTACATTCTCTCGAGTATGCAGTCTTCA
TTTCATCTCAGGTAAGACATGGAAGGGAGTGGGATTTCTGATGAAGTTCC
TTCTGTTCTGTTACTAGTGTTAGTCATCTTTTCTGTTTACGGAATAATTT
GGCGGGCCCATTCGCAAAGTTCGGCGGCATCTGTGTTGTTAGTGCCCGCC
TGCCATTGTTCCCGGGCCCCGGGTGTTTTCCGTGCCACCCAAAACATGGA
GTAGGGTTACCGTAGTATTCGGCCATTCACTCTCCTTTTTTTTAACATTA
AGATTGCTGTTCTTTTGTTTCTGTTACGCAAACTATGCCAGGTAATAATT
TGTGTCGCCTTTTTTGTGTGTGGCAGGTACACTGCAAGGTTTAAACATAC
CCATTACGTTATAGTTTTACGCTCCTTGTAAGTTGTAAGCATGCATCCCG
TTAGCTCAGTTGGTACATCCTCGTTCACCAGGACCCTTCCGCTCCACGTT
ACATCGCTCGCAGAAAGGGCCCTGGTAACACGGGATGGCATCCATGGTTA
TTACGATATCGCCACCAAAACAGCTTCAGCCAATCAGAGGGGTTAAAACC
CGTTTGCTTCCTCTCATCGGAAGCAAGCGCGCAAAGAACGCTGGGAAGCT
ATCAACCAATCAGGTTACGTGTTACGGCTAGCTCATTAATTATTCATGAG
CTACAACTGCCGTTTGTCCCAAATAAGGGCTAGCTCATTAATTATTCATG
AGCTACAACTGCCGTTTGTCCCAAATAAGGGTTAGCTCATTAACTATTCA
TGAGCTACAACTGCCGTTTGTCCCAAATAAGGGTTAGCTCATTAATTATT
CATCAGCAAGTCTCGTCGACCTGCAATAACCATGGATGCCATCCCGTGTT
ACCAGGGCCCTTTCTGCGAGCGATGTAACGTGGAGCGGAAGGGTCCTGGT
GAACGAGGATGAGTTGGTAGAGCGGAGCTCGCTAGTGGTGTTTACAGTAA
TGAACAGGACGTGAATGTTCGATCCCGGGCGGGAGTAAACCTTTTTATTT
TTTAGTAGAATTCTACCTCCATTCAAGTTTTCTTTATATTAATTAATTAA
GGCTATATTTTGCACGACTTTACAGGGCCAAGGTACTGTATACTGTATGA
GGGTTAGACTAACTTAGAGCTGAAAACTGTATGAGGGTTAGAGTTGACAG
AGAAAATATTATGATGGGGTGTTATTTCAAGCTTATACAATGAAACATCC
TGTCAATTGCAAGTATAAAGAAAAATTCTTACTGACTCTAGAAAAATTCT
TACTGACTCNTTTCAAGCTTATACAATGAAACATCCTGTCAATAGTCAAG
TATAAAGAAAAATTCTTACTGACTGTAGTAAAAAGCATATTGACAGGAAC
ATCATGCCAATAGCTTGATTTTATTATTTTTTTCTATGGTGATTTTCTAC
TGCTAAAAGTCTCATTTCATTTCACTCTTTCAGGGAAACCGGCCAGTCTG
TACTCATTTACAGACCCGGACTGGGCCCCAACTCAGCACCTTGGGCACAA
CAAAGTTGACATCACCCTAGGGGTGGCAAGGAGTGTCAGGGCTGCTGAAA
GAAACAACAAACGAATAAAGATCGAGGAAGATGGATATTCAAGTATGTCC
CTGATGTTTTTGAACAGAACTTTCTAATCTTTACTTGTCAATCAATGCTA
GTTGGAACATTTGTTATTGTTTTTTCACGAAATTACATGTGATTAGATGT
ATTGGTTTATTTTATTTTATTTTCAGCTGGTGGCATTATTGATCCACCTA
GCCCTGTAGTGCCAAACATACATGTAGCAGCAAAGTGTGATGCAGGATGT
CAGACAGAACTGACGGGAGAAGATATTGACAGGATGCAGTGCACAGTCCA
GTATCTCACCGAACAACAAGACAACCTGAAGACACAGCTCTTATCACTCC
AGATAAATGAGAATAGTTTTAGTAATAGGGGAGATGATAAGGTTAGATTC
TACACTGGTTTACCCAACTTTCTCATCTTGATGAATGTTTTCCAGCTTGT
TGTGTCCCATGTCAAGTGTACATCACAAAATGTTATCTCACCTTTTCAAC
AATTCATCTTAGTTTTGATGAGGCTAAGGCTTTCACTCTCTCTTCAAGAT
ATTTCCTATCGATTCGGTATATCACTGTCAACTTCATGCAGAATTTTTGA
CAAATGGATTACAGCAATGAATAACCGTCTCAGTTTTCTGATCCTGTGGC
CCCAGCGTACAGAACTAAGAAAAACCATGCCCCTTGTTTTTAAGAAAAAT
TTTGGTAACAGTGTATCTGTAATAATTGATTGCTTTGAAATTTTCATTGA
TCGCCCTTCCAGTTTGATCGCTCGAGCAATGACATGGTCAAATTATAAAC
ATCATAACACTGTTAAATTTCTAATTGGCATTTCTCCACAAGGTTGTATA
TCTTTTATATCTAAGGCATGGGGGGGAAGGGTGAGTGATAAGTATTTAAC
TGAAAACTGTGGGATTTAAAAAAAGTTATTACCTGTGGATATTGTTTTAG
CAGATAGGGGGTTTAATATAGCAGATAGTGTAGCATTCGAAGGGGCAAAA
CTGTACATACCAGCATTTACTAAAGGTAAAAAGCAATTATCCGCTTTAGA
AGTAGAAACAACTCGTAAGATAGCTAATGTCAGAATTCATGTAGAACGTG
TTATAGGTCTTGTTAGAAGAAAATATACAATTTCGCAAAGTACCCTACCC
ATCCCCTTAGTAAAATCTAAACCAAACGATGCTCTAGCACCTATAGATAA
GATCACCAGAGTATGCTGTGCTCTAACAAACTTGTCAGACTCTATTGTAC
TTTCTTAACTTGATAGATAATGGCTATTTGCTTTATGTTCATCTGAAAAT
CCATGCTTTGTCATCACTCTGACATATTACAGTAGGGTTGACGATATTTA
TTGTATAAGTATTCCTGGGCATTGCAATACTTGCCTAATAATGAAGATAT
ACAAACATGTATGGTTTTGAAATACACCTGATGTATGATGCTATATATTG
TTTCAATATTTCCTGACTTTACAATACTTGATAACCAGTGAAGACAACAA
ACATGTGGTTTTGAAATACATCACTATATGATGCTATCCATTGTTTCAAT
ACTTCTGGTCATCGGACAATACTAACCTGTATAAGTGATTTTATCTGTTG
TATTTCTGAGACAATACTGGCTTAATAGTGAAGATATTCAAACTTGTATT
ACTGTAATAGCAAGTGATGCTATCTGTTGCATCAATATTTCTTGAACAAA
ACTTGTTTGATAGTGAAGACATACAAACTTGTATGGATTCTGAATACATG
TGCAATGTTTTGTATCACAATATTTATGTTTTTAATGCATAAATATTTCT
GGGCATTGCAATACTGTACTTGCTTCAGACTGAAGTCAAGTTTGTCAATG
AAAGTTATACTTTCGATGAACCTTTGAAGATAACATTTATTATTTATTTC
TTCATTTCACCCTGATGACTCAGTTTTGGAGAACCACTTGCCAACAATTT
CAGGGAGAATTGCCTTATCAAAGAACTTCTTAGATTTTAAGGTCATGTTA
CTCCAAAACTCTGCATTAGGCAGGATTCTCTCTATATACACCCCCTTCTT
GGTCCATACTACAAAATCACAGTATTCTACATCACAGATGAACATCTGTG
CTTGTACTTGGTAGTAATAAGTATGTGATTGGTCAAGGTGGATCTTGTGA
TCAGTTTCCTTCAAGCAAAAGTTTCTGGTATTTACCAAATCTGTTGGAGG
AAGGTCTTTGGCATTAAATGGACACTTTATTTCACATACTCCTTTCCCAC
AACATTTACACTCGACCAAACCATCTGGTGTTGCTCCTAGATATGGCCAT
TCGTTGTTGATGTGGAAACCACTATCAAACGTTACAAAACCTTCATGGCC
TTCCACCATTTTCTCTATGTATTCATCACGACCGGTAGCCTCATGACATT
GGCCCCAATCTGTTGCATCACTGGCAAACTTCTGTGATTCTGGGTAGCAT
ACCTTTTTGATGATAGACATTGATGGTTTGTCGGGATCTGTGTGGCATGC
TGACTTAAGATTAGATGCAGTAATGCGGCCTGCACATTGTTTATACCACA
AAGCTGATTTTGACTGTAAACGAGTGTTTTCTTCGATGGACTGGGTTTCA
TCTGGTGTGAGAGCAATACTGATTTCTTCACACTTCTCACACAATTCGTT
GAAACTCAGTTCAGCACGGTTTTCATCGTACAGATCAGATAGTGGTGTTG
GGAGTACAGTGACTGCCTCTCTGGTTACATAATTCTCATTGAAGGGAGGT
ACAAGTGAAAGAATTTGGGGTTGGGATCCTGAATTTGAGATATTGTAGAA
AAACTGAAGCTGTTCAGCCTTGTCGGTTCCAGCCTCAGTGGTCGGTTCAG
GCATTGTGCGAGTCGCAGATGGTGTTACATTACTTTCTAGCAACAAGGTA
TGCTTTCTTTTGGCAGACTGAAAATCCATCTCTGTAGCGGGCAGATAGGG
GATGTTGCGGACATATGATGGTACTGTCCACTGGCTTTTGTCTTGGGTGC
AGGTTCTTGAGTCTTTCAACCGTGCCCCTACTTCTGCTGCAAACAGTATT
GCGCCAATGTGTGAACATGCCTCGCTGACACCTGCCATGCAGTTGCAGTG
GGCCAAGATGACCTTGCCCTTCTTCTCGGCCAAAAACCATGGGTTCAGAG
GTGTTGCACTGGCTCTTTGGGAGTGCTTCACCTATGGAAAAAATATTTTG
ATGATGCAAATGACTTCCTTATTAGCATAATTTTTGCTTGGTCATGTACA
CCTTTGACCAACACATGTCATAATGTTAACAGTTCAATCATTTACCTCTT
AGAACAATTGTAACACTTTTGCATTCATTATGCAAATGTATTTGTATAAT
TTGTATCATCCATATGACACATTTATTTCAGACCTATAATCTCTTGAGGT
GAATAAGCAAATTCCACTGTCTCGCAAAAAGAAGCTGAACGCAATAAGCT
AGAACTTAGTGTCAGTAGTTAAGACTAGAGTAGTCATGTTATATTGTTCA
TCATTATCTGTCTGTCCACTCTGTTACATGTACATGTACTTGTAATTAGC
CTACGGGCAGGAATTTGCAAATAAAGTTTCAAAGTCATGAAAATCTATAT
TTGCAGTGTTTTCCATTCAATGCTGACTACAAAAAAACACTCAAAACAAT
ATCCCCATTTTTCTAGCTACTGGAAAAATATATGCTAATATATGCTGACG
TCAGTCTGATATACAATTTCTCTATTGCGCAATCCTTTCCTCTTACTGTC
GGCCTTCTAGCCTGAGC Coding sequence (CDS) from alignment at Sc0000252:223574..229090- >transcript:BL90907_cuf1 ID=transcript:BL90907_cuf1|Name=transcript:BL90907_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3339bp|location=Sequence derived from alignment at Sc0000252:223574..229090- (Branchiostoma lanceolatum)
GCAGTCTATGGCTGTGGCCATAATAGTAAACGAGATAAAGGGTACAGCTA
TCACAGGATTCCGAAGATGATTGAATCACAAGGGGAGAAAACAAGACTTC
TTTCAGAAGAGAGACGACGGGTATGGCTGGCAAATATCAACCGGTCGCTA
GCCGACCTGACGCCGTCCAAGTCTACATTCTCTCGAGTATGCAGTCTTCA
TTTCATCTCAGGGAAACCGGCCAGTCTGTACTCATTTACAGACCCGGACT
GGGCCCCAACTCAGCACCTTGGGCACAACAAAGTTGACATCACCCTAGGG
GTGGCAAGGAGTGTCAGGGCTGCTGAAAGAAACAACAAACGAATAAAGAT
CGAGGAAGATGGATATTCAACTGGTGGCATTATTGATCCACCTAGCCCTG
TAGTGCCAAACATACATGTAGCAGCAAAGTGTGATGCAGGATGTCAGACA
GAACTGACGGGAGAAGATATTGACAGGATGCAGTGCACAGTCCAGTATCT
CACCGAACAACAAGACAACCTGAAGACACAGCTCTTATCACTCCAGATAA
ATGAGAATAGTTTTAGTAATAGGGGAGATGATAAGGTTAGATTCTACACT
GGTTTACCCAACTTTCTCATCTTGATGAATGTTTTCCAGCTTGTTGTGTC
CCATGTCAAGTGTACATCACAAAATGTTATCTCACCTTTTCAACAATTCA
TCTTAGTTTTGATGAGGCTAAGGCTTTCACTCTCTCTTCAAGATATTTCC
TATCGATTCGGTATATCACTGTCAACTTCATGCAGAATTTTTGACAAATG
GATTACAGCAATGAATAACCGTCTCAGTTTTCTGATCCTGTGGCCCCAGC
GTACAGAACTAAGAAAAACCATGCCCCTTGTTTTTAAGAAAAATTTTGGT
AACAGTGTATCTGTAATAATTGATTGCTTTGAAATTTTCATTGATCGCCC
TTCCAGTTTGATCGCTCGAGCAATGACATGGTCAAATTATAAACATCATA
ACACTGTTAAATTTCTAATTGGCATTTCTCCACAAGGTTGTATATCTTTT
ATATCTAAGGCATGGGGGGGAAGGGTGAGTGATAAGTATTTAACTGAAAA
CTGTGGGATTTAAGCAGTCTATGGCTGTGGCCATAATAGTAAACGAGATA
AAGGGTACAGCTATCACAGGATTCCGAAGATGATTGAATCACAAGGGGAG
AAAACAAGACTTCTTTCAGAAGAGAGACGACGGGTATGGCTGGCAAATAT
CAACCGGTCGCTAGCCGACCTGACGCCGTCCAAGTCTACATTCTCTCGAG
TATGCAGTCTTCATTTCATCTCAGGGAAACCGGCCAGTCTGTACTCATTT
ACAGACCCGGACTGGGCCCCAACTCAGCACCTTGGGCACAACAAAGTTGA
CATCACCCTAGGGGTGGCAAGGAGTGTCAGGGCTGCTGAAAGAAACAACA
AACGAATAAAGATCGAGGAAGATGGATATTCAACTGGTGGCATTATTGAT
CCACCTAGCCCTGTAGTGCCAAACATACATGTAGCAGCAAAGTGTGATGC
AGGATGTCAGACAGAACTGACGGGAGAAGATATTGACAGGATGCAGTGCA
CAGTCCAGTATCTCACCGAACAACAAGACAACCTGAAGACACAGCTCTTA
TCACTCCAGATAAATGAGAATAGTTTTAGTAATAGGGGAGATGATAAGGT
TAGATTCTACACTGGTTTACCCAACTTTCTCATCTTGATGAATGTTTTCC
AGCTTGTTGTGTCCCATGTCAAGTGTACATCACAAAATGTTATCTCACCT
TTTCAACAATTCATCTTAGTTTTGATGAGGCTAAGGCTTTCACTCTCTCT
TCAAGATATTTCCTATCGATTCGGTATATCACTGTCAACTTCATGCAGAA
TTTTTGACAAATGGATTACAGCAATGAATAACCGTCTCAGTTTTCTGATC
CTGTGGCCCCAGCGTACAGAACTAAGAAAAACCATGCCCCTTGTTTTTAA
GAAAAATTTTGGTAACAGTGTATCTGTAATAATTGATTGCTTTGAAATTT
TCATTGATCGCCCTTCCAGTTTGATCGCTCGAGCAATGACATGGTCAAAT
TATAAACATCATAACACTGTTAAATTTCTAATTGGCATTTCTCCACAAGG
TTGTATATCTTTTATATCTAAGGCATGGGGGGGAAGGGTGAGTGATAAGT
ATTTAACTGAAAACTGTGGGATTTAAGCAGTCTATGGCTGTGGCCATAAT
AGTAAACGAGATAAAGGGTACAGCTATCACAGGATTCCGAAGATGATTGA
ATCACAAGGGGAGAAAACAAGACTTCTTTCAGAAGAGAGACGACGGGTAT
GGCTGGCAAATATCAACCGGTCGCTAGCCGACCTGACGCCGTCCAAGTCT
ACATTCTCTCGAGTATGCAGTCTTCATTTCATCTCAGGGAAACCGGCCAG
TCTGTACTCATTTACAGACCCGGACTGGGCCCCAACTCAGCACCTTGGGC
ACAACAAAGTTGACATCACCCTAGGGGTGGCAAGGAGTGTCAGGGCTGCT
GAAAGAAACAACAAACGAATAAAGATCGAGGAAGATGGATATTCAACTGG
TGGCATTATTGATCCACCTAGCCCTGTAGTGCCAAACATACATGTAGCAG
CAAAGTGTGATGCAGGATGTCAGACAGAACTGACGGGAGAAGATATTGAC
AGGATGCAGTGCACAGTCCAGTATCTCACCGAACAACAAGACAACCTGAA
GACACAGCTCTTATCACTCCAGATAAATGAGAATAGTTTTAGTAATAGGG
GAGATGATAAGGTTAGATTCTACACTGGTTTACCCAACTTTCTCATCTTG
ATGAATGTTTTCCAGCTTGTTGTGTCCCATGTCAAGTGTACATCACAAAA
TGTTATCTCACCTTTTCAACAATTCATCTTAGTTTTGATGAGGCTAAGGC
TTTCACTCTCTCTTCAAGATATTTCCTATCGATTCGGTATATCACTGTCA
ACTTCATGCAGAATTTTTGACAAATGGATTACAGCAATGAATAACCGTCT
CAGTTTTCTGATCCTGTGGCCCCAGCGTACAGAACTAAGAAAAACCATGC
CCCTTGTTTTTAAGAAAAATTTTGGTAACAGTGTATCTGTAATAATTGAT
TGCTTTGAAATTTTCATTGATCGCCCTTCCAGTTTGATCGCTCGAGCAAT
GACATGGTCAAATTATAAACATCATAACACTGTTAAATTTCTAATTGGCA
TTTCTCCACAAGGTTGTATATCTTTTATATCTAAGGCATGGGGGGGAAGG
GTGAGTGATAAGTATTTAACTGAAAACTGTGGGATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000252 | genome | Sc0000252:223574..229090 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90907_cuf1 |
| Biotype | protein_coding |
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