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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL91610_cuf1 >transcript:BL91610_cuf1-protein ID=transcript:BL91610_cuf1-protein|Name=transcript:BL91610_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=115bp
LSSMRSYVWILVFLVLSLVVTIEGGKCPKRFKKRGCKALVLTNTIRTNCQ
PPFKCGEECHYECVPGCVRKSGAKVRTCRFGRYWRGGRGLKCSCKLLFLK
KNQFDSLVLSSIPRR Run BLAST on NCBI mRNA from alignment at Sc0000116:367524..373200+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL91610_cuf1 ID=transcript:BL91610_cuf1|Name=transcript:BL91610_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5677bp|location=Sequence derived from alignment at Sc0000116:367524..373200+ (Branchiostoma lanceolatum)
CACTCTCCAGCATGAGGTAGGTAACGGCTGGAAATGCATTATATTCCATA
TCATAAATCCGCTAGTATGTGTATATAGATTCAATCTAGAAGTATTGACA
TAAGAATCATTTGTGCAATGTAGAAAGAGACTTTATAACACTAAAAAAAC
TCATCCTTTCTTGGAGGAAGTTACAGAAATAATCTTTATCGCTAACAAAC
GTTTATTATCAAATGATAAAGCTGATGTGATTAGCTTGTGTCGAGTAGTC
TCAGATCAAACAAGTAGGTAGGCCTTTTGAAAATTGAACTTCCACATGAA
GAACGATTTGTCCAAGTAAAATGGTTGCCAGTTGAAATCTATACAAATAG
GCGCGGCAGACAAAATATTTGCCTCGGGTGGAAAGCGCTCGAGTGTGAGA
AAATAATAGAACTTGTAAGCTACAGGTAAATGAAATGATCTTGAATGCCA
TACTATCGGCTTCTAGAATAATATTCGAACTTGAAATGTTTTCCTGTCAG
CTAACGACAAAATCAGCTGTTTAGTTATTATTTTTACGGGTTTAAGTTGC
GATGCTTATCAGGGTTTCCAATTTGAAGCAGTGTGTTTAGAGCTAGCAGT
AAACTAGGGTTTATTTTTAACAGAAAAGTTAACACTGTCTTGATCCCAGG
TTACTTATGAAAACTAGGCAACAAGTCGTTTTTGCTTTGTTTCGATACAT
CGTTGACTTCTTTATCCATCTATCGTTTAAATCAGGCACTTACACCCTAA
ACAGATTCATGAACAACACATGACAACACATAATTACAATATACCAGTGA
AACTAACTGTTATGAATAAAACTACCTTTCAAAAACATAGTGCTTCCAGA
ACGTGTTGTGATAGTAGTTATCTGTCAATGAACTGATAACTGGATGATGT
CATTTTTAGAACGGAGGAGGATGATTAGGTGAGTTTTGGGCGAAGTCGAA
ANACAATATACCAGTGAAACTAACTGTAATGAATAAAACTACCTTTCAAA
AACATAGTGCTTCCAGAACGTGTTGTGATAGTAGTTATCTGTCAATGAAC
TGATAACTGGATGATGTCATTTTTAGAACGGAGGAGGATGATTAGGTGAG
TTTTGGGCGAAGTCGAAAATCATGTCCACACAGCTTTCAGTATCTTTCTG
ATCAACCGTTTTCTGCAACCATTGCACCGTAAGACAGAAGAAGGAAATGG
GTCTAAACACACAAACACAACAACATAACACAAGTAGCAACATTTCAGTA
TTGTAATATCGAGACCTCTCACTTCTCTGTGGTATTTATATCGTACCATC
TGATTCATGTAAGTTGTATCCTCAGTCTTCATGTAATTTGTGTTAAGGTT
TATTGAGGAATTAAGTCCTTTGTATCTCTTAGTTATCTAGTGTCATGCAC
ATATTTAGCACGTTGAAGGGTCTATAGTTTAGAAGTTAATCATTGGCACA
TACACAAGCTACATGATATATCATGTATATACTAACAATCGATGTTAATT
TCTCTCTGCTTTAGGTCGTATGTCTGGATTTTGGTCTTTCTTGTTCTGTC
ACTTGTGGTGACCATAGAGGGAGGAAAGTGCCCCAAAAGGTTTAAAAAAC
GTAAGTCTCTCTTATTCAATTAAACACAAGTCGTGTTCACTAGCGTTTTA
TATGGTATCTGCAATTGCAAATCGCACTTAATGTTTTGTAAGTGTCACGG
AATGTAGTCTACTGTTTGAACAGTTAAAAGTGGCATTGACAAGTTATATA
CTCGGTATATTATATAGTACTAAATGCATCAAATGTATTTCATATCTATT
TCAATTGAAGGTGAATACCATTCTGGGGTTTCTATGTCATTTTTTTAAAT
TTTCATACTGTAGGGCTCAAAATACTACCTGCTCATGCAAGTTAGTGCAT
GTAAATAGGAGCTGTACAGGTATTTCTAATGTCTTCATAATCAGATGCAT
GATTCACAAAGGTGACATAAGACCGGTATGGGCCCACTGCCTTGTATTCT
TCATAGTAGCATCCTTAGATAAAACAATCAACTCAACAAAAGACATTCAA
AATGGTATGACTGTAAGATTTCCAAACACTGTTTTTGATGGAATGGAAGA
TAAACAAAATGGCGTGGCGCAGCTTATGATGAGTCATCTTTATCGCCTTA
AGCGCAGCATTGTCCATAAATATTTTTGAATGCCTGATATCGATGCGAAA
TACATTGTGGTTATAATTTGAGTCCTGTGTGTGGTTAGAATATGTTAATT
AACACAAAGGGCATTAGTCGGTTTTTAGAAAACATATACTTCAACATGAG
TAACGAAAAGTAATTTCGCCCGATAGGTCAGCATTGCACAGTTCATTAAA
TGCATTGAAGAGACGTCATGAGAAAATCAAACTTTGTGGAAAGTTCCTCG
TGACGTCTGCTCTTTTTGATTCATTTAATGAACTGTGCAATGTTGACCTA
TCGGGCGAACTTGCTTTTAACCTCGTTACTCGTGTTGAAGTATGTGCTTT
CAAAAACAACCTTATTTGGTCATACATTTACACAACACTAAAAATGCTTA
TGTTGTGTTAATACCCCACAACTCAATTTAGTTGAAAATACATCAATACA
TATATATTACTGCAAATACGTTCTAATTTAAGTTTAAGGTACGTCAACAT
ATGTGTAGACAGATGAGACCACTGATATAGTAATAAAATTGGTCGAACTT
TTTTATTGACTTAGGCTTTGGGTCTGATACATCCTTAAGAAGAGAGAAAC
ATATCAATATGAAAACTACAAAGTTTTACCTTCTATGCAAAAGGGAATTC
ATTATAATAATCTAAAAATCAACATGAAAGTTTGAGACGATGATTATGGT
GTATTTCGAGAGCCAATGTCACCAATGTGAATATACGTTTGCTGCTGCGT
TTGAAGAAATATTTAGAAAAAAAAGGTTTTCCAACTCTTTTACCATGTAA
ATATTTGACCTATCAGACCATTTCTTTTAACCTGGTTACATTTGAATGGG
GCAATAGCCTACTTCGATGTGCAGACCAATGAGAAATGTTGTATTGTACT
AGAACCTGAATTTGCAAAAAGTGCAGTAACTTAGTAAACCAATGGGGTCA
GTTCACAACCATGTACCAAGTTTTCATACCAAGTTGATTTTTCTGTGACC
GTATGTCGGACAGTAGCTGTCACGCTGCAGCAGCGACACCTAGCGGAAGT
GTGAAGTACACCAATTTAAAATGCCCTGGGGATTGACAGAAGGTTACGCA
AACTTCGACGGGTATGATCACTTGATTGATTATAAAGAACTTTAAATTGT
TGTATCAGATACATGTAATTGTATAGGGTCACATTTATGTTCAAGGATAT
TCATTCGTCTGATCTTCGACTTTCGTGTAAGCAAAGTACTGAAATAAATA
CGTCACGATATGTGTGAAACGGTCACGAATGAAATAAGCCCTACCTTTTA
ATCGACTAAGGCATTGAGTCTGGAACTAACGTAGCCTTTGTTACACAGTC
CCTGGCAGCCACCGGCGAACCCCCTCCTCCTCCCTAGATGCATATTCGTC
AAACACATGTTACTAATAGACTCCATTTGCAGCATGGATGTCTATGTCAG
TGTTGTCGTTATTTGTGTACTTGTTGACAAAATAGGTAACCAAACCGGTT
TTCGTCCGCTAGTAGATCGCCGAACCGTTGTGACCTCGTTATTGAAACAC
TTTCCAGCTCACTAACCACGATAATGGTTGCAGCCGTGCCATGATCAGCG
CCTCGAGCGTATCATTACGCAGCAATTGTCAGTCATTCTCTCTATCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCCCTCTCCC
TCTCTCTCTCTCTCTCTCTCCCTCTTACACACTTACACACTTACACACTT
ACACACTTACACACACACACACACACACACACACACACACACACACACAC
ACACACACATACATATATATACACACATATACACACACACACTGTCTCTC
TGTCAGTCAGTCTGTAAAAACTAGGACTTAAATTCAGAAATACGGTATGG
TAAATAATCTATGGATATGGTATCTAAATCTGCTGGGCGACCAGCCTGAG
GGTTGAATGAAGGTGTCACAGTTGAGGTCAGGATGTGTCAGTCAACCTAC
CGTAGACTAATGACTCCCCCAGACAGTCAGCTGTAGTAAAGGTCACGCGT
ATTTATACGCCAACTGGGCGAACTTCACAATCTTAATCATACGATATAAA
AGCCGAGTTATTATACTACCAAACAGTATGCCTCGCTGACTTCAACTTAA
AGTGTTTACGTTTACAATCACAAAAGGTACAAGATTTCGGTCGCAATAAT
GGTTTATCGCTACGTCACAGACCGGAAGGGTTGCGGATAAATGCTGTGCT
CTCCTGCCTTGATATAGGCCAGAGTTAAACAAAGATATATATATATATAT
AATATGGCCTCCGTCGGTCAGTATTGAGCATGGCAAAAATCCTAATGTAC
AACAGCCCTACAGCATCGACTATGGCTAAACAGCCCTATATGAGAATGGC
AGTCTCTGCCACAAAAATCACATCTGTAAGCTGACTCAGTCCTGTTGCAA
AGCTCTTTTCTGCGGATCCGCTTTTCTTCTGCGCTGTGCATCAGTCTGAC
TTCTCCTGATTTCAGCTGTCTGCAAAGATATTTCTTCCAATATTCACCAA
ACGGTTATCACAAGTTGTTCAGCTTAGGAAATGGATGTGTATTTGGGAGG
GAGTCCAGCCGTAAGTTAATGTTTGATACAGGTGTTCTGAACCGTGTGAT
ATTTTCCGTTATCACACGGACTTCTAATTGTATCACACGGGCTTCCTTAG
AATAATTTCATTATACCGAATACACCGTCTTGTACTCACTTGTATGTATC
ATTGTAGTCTAGCTGTAGATATAACTGATTTGAATGTTGGATATTGGAGA
TTCTTTTTGCACAACCTGTAAATCTCACATGCTGACGTTTCAGCAATACT
GGTTGTGCAAAATGAATCTCCAATATCCTATGTTCTACCAACCTGATGAA
GTTACTTTCGCAAGTGATTTGAATTCTCGTTTGATATTCCAGGGGGATGT
AAGGCGCTAGTGCTGACCAACACCATCCGAACCAACTGCCAGCCTCCATT
CAAATGCGGAGAGGAGTGCCACTACGAGTGTGTCCCTGGATGTGTGAGGA
AGTCCGGAGCCAAAGTGAGGACATGCAGATTCGGACGTTATTGGCGTGGA
GGGAGAGGACTTAAGTGTTCATGTAAGTTACTCTTTTTAAAAAAAAATCA
ATTCGACAGCCTGGTGTTGTCATCGATTCCACGAAGATAAGCGGCTCGTA
CATCATAAGCATAATACACAAAAGAGAGTCACATCACAATCTTGCCTCGA
ATTTACATCTTGTCATCCGCTTTAACATTACCTCAGATTCAATATTATCA
TTATCATCATCATCACAATATCATAATGTTACAGTATACAACAATAAGTA
CCATTATTATAGGATAAGCTATAAGGGGTTTAAGAGAACTCTGTTTACTG
CAGTCTTGAAAGTGTTCACATTTGGAATAACTGGGAAAACCGAGGCTGGC
AGTGCGTTCCATAGTCTACTTGTTCTAGGTACGTATGAAGTCAAGTGGAG
CTGAGTCTTAGATCTAGGGATGTTGAC Coding sequence (CDS) from alignment at Sc0000116:367524..373200+ >transcript:BL91610_cuf1 ID=transcript:BL91610_cuf1|Name=transcript:BL91610_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1044bp|location=Sequence derived from alignment at Sc0000116:367524..373200+ (Branchiostoma lanceolatum)
CTCTCCAGCATGAGGTCGTATGTCTGGATTTTGGTCTTTCTTGTTCTGTC
ACTTGTGGTGACCATAGAGGGAGGAAAGTGCCCCAAAAGGTTTAAAAAAC
GGGGATGTAAGGCGCTAGTGCTGACCAACACCATCCGAACCAACTGCCAG
CCTCCATTCAAATGCGGAGAGGAGTGCCACTACGAGTGTGTCCCTGGATG
TGTGAGGAAGTCCGGAGCCAAAGTGAGGACATGCAGATTCGGACGTTATT
GGCGTGGAGGGAGAGGACTTAAGTGTTCATGTAAGTTACTCTTTTTAAAA
AAAAATCAATTCGACAGCCTGGTGTTGTCATCGATTCCACGAAGATAACT
CTCCAGCATGAGGTCGTATGTCTGGATTTTGGTCTTTCTTGTTCTGTCAC
TTGTGGTGACCATAGAGGGAGGAAAGTGCCCCAAAAGGTTTAAAAAACGG
GGATGTAAGGCGCTAGTGCTGACCAACACCATCCGAACCAACTGCCAGCC
TCCATTCAAATGCGGAGAGGAGTGCCACTACGAGTGTGTCCCTGGATGTG
TGAGGAAGTCCGGAGCCAAAGTGAGGACATGCAGATTCGGACGTTATTGG
CGTGGAGGGAGAGGACTTAAGTGTTCATGTAAGTTACTCTTTTTAAAAAA
AAATCAATTCGACAGCCTGGTGTTGTCATCGATTCCACGAAGATAACTCT
CCAGCATGAGGTCGTATGTCTGGATTTTGGTCTTTCTTGTTCTGTCACTT
GTGGTGACCATAGAGGGAGGAAAGTGCCCCAAAAGGTTTAAAAAACGGGG
ATGTAAGGCGCTAGTGCTGACCAACACCATCCGAACCAACTGCCAGCCTC
CATTCAAATGCGGAGAGGAGTGCCACTACGAGTGTGTCCCTGGATGTGTG
AGGAAGTCCGGAGCCAAAGTGAGGACATGCAGATTCGGACGTTATTGGCG
TGGAGGGAGAGGACTTAAGTGTTCATGTAAGTTACTCTTTTTAAAAAAAA
ATCAATTCGACAGCCTGGTGTTGTCATCGATTCCACGAAGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000116 | genome | Sc0000116:367524..373200 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL91610_cuf1 |
| Biotype | protein_coding |
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