transcript:BL95093_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95093_evm0
Unique Nametranscript:BL95093_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95093_evm0

>transcript:BL95093_evm0-protein ID=transcript:BL95093_evm0-protein|Name=transcript:BL95093_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=166bp
MVRNGHIKRITDNDIQSLVLEICGTNVSTTYITCPADPKKTLGIKLPFLV
MIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDD
GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDEL
PAEFKLYLPVQNKAKV
Run BLAST on NCBI

mRNA from alignment at Sc0000005:877590..880346+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95093_evm0 ID=transcript:BL95093_evm0|Name=transcript:BL95093_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=2757bp|location=Sequence derived from alignment at Sc0000005:877590..880346+ (Branchiostoma lanceolatum)
ATGGTTTGATTGGACCAGAATGCTTCTCAATCAACTGTGAATGAGTGGCG
TTTGTGTTCTGTCAATGGCAGGCAGTTCCCAAATCAGCCCACTGCATATT
TTCAGCCCACCGCATATTTTCAAACAGCAACAAGACGCTTACATTGGTAG
CCTGCTAGCAAATCAAGCCTTACATTAGGGTTTTCTAAAGTATGACATAT
ACTTTTGACGAAATTTTGACAATAATTTTGAGCAAATGTGGTACAAGTAT
ACAAAAATGCAGATCTAAAATGTTGCCATTTCTCCCACATGAATTAAGAT
CAAAAAGAATTTCACCATGAAGTTAGGTACCTTTGAACTTGTATGAATTT
ACAGCATATACACTTTAAATGGACCATCAGGATTATTGACATTGTTAAAA
ACTATGATTTCTCTTTTGTACCCCAGGTGCGAAATGGCCACATCAAGAGG
ATCACAGACAACGACATCCAGTCACTTGTACTCGAGATTTGTGGTACAAA
TGTCAGGTAAGAGCCGATCAGATTTTCGTTTCTCTGATAATTGTGTCTCT
TCAATTTCAAATCAAAGAATAACTGCTCATCATATGGGCCGACAATAAGT
TGCTATTTTGGATTTGAATTTTATTGGAATTGCAACAGTGCAATACACGT
GGGACACAGGCAGCTATTTGCTGATGTCGTGACCCACACACATAATGTGC
CCATTTTTTACACTTGAGTGAAGTGGGGAAAGTCGTGTAAAGTGTCTTTT
TCCCAAAGGCACAAGATCGGTGGCGTCGGGGATTCGAACCCGGGACCCTG
GGTTCTGAGTCGAAAATCCTGCCGTTACACCACACGACCCCACTTACAAT
GACTAGTTTTATCTTTGCTAGAATGATGATTGTTGTTATTGTTTTTACTT
GTTTTTAACATTTTATAATTTTTACCTTTTAGCACAACATATATCACCTG
CCCGGCAGACCCAAAGAAAACCCTGGGAATCAAGTTGCCCTTCCTCGTGA
TGATCATCAAGAATCTGAAGAAGTACTTCACCTTTGAGGTTCAGGTGGGT
TTGGATTCAAAGATTAATTTGACAGAAAAATAGAATACTTTATTGCCAAT
GATAACAAAAGTACAGGGAGTTTTGTAAGGTCTTCTACTACTTTAAACAA
GTAAAAGTATGAAAATGTTCACTGTTGCATTTGTTGAAAAATTGTACATT
CATGCATTTCATGTAGAGAAATTGGGGAATGAGCTTGCATAGTACAACGG
CATGGAAAGTAAATGCTTTTTTGTTCTGACATAATCTTTCCAGCCTTAAA
TCAAATGAATTGCCTGAAGATATGTAGTACATTACAAGTATTCAGCATCT
TAGACCAGATATGCTATTATAACCTGACAACTGTCATGATGATGATGTTT
CTAACGGCTGTCTTTTCGTGAACGGACAGGTCCTAGATGACAAGAACGTG
CGCAGACGGTTCAGAGCGAGTAACTACCAGAGCACGACCAGAGTGAAGCC
CTTCATCTGCACAATGCCCATGAGACTGGATGATGGGTGGAACCAGATCC
AAGTGAGTTATCATAAGGTTTACCTTAACGGAAGGGAGACATATTATTTT
TGCTCCATTTCTCTTCTTATTCTGTTGCAAACAAATGAGGTCAATGACCT
GGGCCAGACAGGGTAGAAACAAAATAATTAAGTTATATGACGTCACGTAG
GTGTAGGTGTAGCAGACACCCTGTGGTGTTCTATTACATCATGTAGCAAG
TGGCAGGACAGAGCTGGAGGGGCTGGTCACCTTGTACATGAATGTGTTTG
AGTAAGAATAAACAGAGCTGCAGTAGTTTTTTAGGCTAGATCTGATGTAT
TTGCCTTTAAATGTTACCTGTCTAGTTACATAATTATAGTGTTTGTTGGG
TGTGGTCCCAACTTTGCTGACGACATTAAAGTCTTTGTTGATTGTACGTG
TTGAAATGTATGTAAGGACAATGTTATAGCAGACTTAGTACATGGCAAAG
GGCAAATTCCGTAGCAAGATTCTTCCTTGCATGTTTGGTTGTCCCCAAGA
AGATGCTTTTAAAATCCACAAGAGGAAGAGTGAAAATTACTTTGTGGCAC
GATTGCTTGAGGATGAACATGTCTTTTCTTTCATTTGTTTTATGTTTTAT
TTTATCAGGGTAAAATCATACTCTGGCATGCAGCCTGTTTTCATGTGTCC
CTAGACACATGCAATACTTGATTTTGTGTTCATGTTGGAGAGCTTTTCTT
TCTTGATTACAACAAGCTCTAACCATAACTTTGACTCGCTCCCACAGTTC
AACTTGTCAGACTTCACGAGGAGGGCCTACGGGACCAACTACATCGAGAC
GCTGCGTGTCCAGATTCACGCCAACTGCCGCATCCGCCGGGTCTACTTCT
CCGACAGGTTGTACTCAGAAGACGAGCTGCCAGCAGAATTCAAACTCTAC
CTACCAGTGCAGAACAAAGCAAAGGTAAGATTGGATTTTTTAAAAATTGT
TTATTTATATCAACTTTCATACAGCATTAGCAGTTGGACTTGGATCGTAG
ACAGAACGCTGTCGCTGAGGAAAAAAATTAACTTCATATTTGAACTTCTC
TCTATCTCTAATGGTACTTATGGCCTCTGGATTGGATCTTTAAAACTACA
TTCACTATCTCTCATTTTCTAACAATCGATTTTTCATCCGTCATTTTAAT
TTTTGATTATGGTATCATGAAATTTATTTGTGGATTTTTCTTCTTTTCCA
GGTTTGA

Coding sequence (CDS) from alignment at Sc0000005:877590..880346+

>transcript:BL95093_evm0 ID=transcript:BL95093_evm0|Name=transcript:BL95093_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3006bp|location=Sequence derived from alignment at Sc0000005:877590..880346+ (Branchiostoma lanceolatum)
ATGGTGCGAAATGGCCACATCAAGAGGATCACAGACAACGACATCCAGTC
ACTTGTACTCGAGATTTGTGGTACAAATGTCAGCACAACATATATCACCT
GCCCGGCAGACCCAAAGAAAACCCTGGGAATCAAGTTGCCCTTCCTCGTG
ATGATCATCAAGAATCTGAAGAAGTACTTCACCTTTGAGGTTCAGGTCCT
AGATGACAAGAACGTGCGCAGACGGTTCAGAGCGAGTAACTACCAGAGCA
CGACCAGAGTGAAGCCCTTCATCTGCACAATGCCCATGAGACTGGATGAT
GGGTGGAACCAGATCCAATTCAACTTGTCAGACTTCACGAGGAGGGCCTA
CGGGACCAACTACATCGAGACGCTGCGTGTCCAGATTCACGCCAACTGCC
GCATCCGCCGGGTCTACTTCTCCGACAGGTTGTACTCAGAAGACGAGCTG
CCAGCAGAATTCAAACTCTACCTACCAGTGCAGAACAAAGCAAAGGTTTG
AATGGTGCGAAATGGCCACATCAAGAGGATCACAGACAACGACATCCAGT
CACTTGTACTCGAGATTTGTGGTACAAATGTCAGCACAACATATATCACC
TGCCCGGCAGACCCAAAGAAAACCCTGGGAATCAAGTTGCCCTTCCTCGT
GATGATCATCAAGAATCTGAAGAAGTACTTCACCTTTGAGGTTCAGGTCC
TAGATGACAAGAACGTGCGCAGACGGTTCAGAGCGAGTAACTACCAGAGC
ACGACCAGAGTGAAGCCCTTCATCTGCACAATGCCCATGAGACTGGATGA
TGGGTGGAACCAGATCCAATTCAACTTGTCAGACTTCACGAGGAGGGCCT
ACGGGACCAACTACATCGAGACGCTGCGTGTCCAGATTCACGCCAACTGC
CGCATCCGCCGGGTCTACTTCTCCGACAGGTTGTACTCAGAAGACGAGCT
GCCAGCAGAATTCAAACTCTACCTACCAGTGCAGAACAAAGCAAAGGTTT
GAATGGTGCGAAATGGCCACATCAAGAGGATCACAGACAACGACATCCAG
TCACTTGTACTCGAGATTTGTGGTACAAATGTCAGCACAACATATATCAC
CTGCCCGGCAGACCCAAAGAAAACCCTGGGAATCAAGTTGCCCTTCCTCG
TGATGATCATCAAGAATCTGAAGAAGTACTTCACCTTTGAGGTTCAGGTC
CTAGATGACAAGAACGTGCGCAGACGGTTCAGAGCGAGTAACTACCAGAG
CACGACCAGAGTGAAGCCCTTCATCTGCACAATGCCCATGAGACTGGATG
ATGGGTGGAACCAGATCCAATTCAACTTGTCAGACTTCACGAGGAGGGCC
TACGGGACCAACTACATCGAGACGCTGCGTGTCCAGATTCACGCCAACTG
CCGCATCCGCCGGGTCTACTTCTCCGACAGGTTGTACTCAGAAGACGAGC
TGCCAGCAGAATTCAAACTCTACCTACCAGTGCAGAACAAAGCAAAGGTT
TGAATGGTGCGAAATGGCCACATCAAGAGGATCACAGACAACGACATCCA
GTCACTTGTACTCGAGATTTGTGGTACAAATGTCAGCACAACATATATCA
CCTGCCCGGCAGACCCAAAGAAAACCCTGGGAATCAAGTTGCCCTTCCTC
GTGATGATCATCAAGAATCTGAAGAAGTACTTCACCTTTGAGGTTCAGGT
CCTAGATGACAAGAACGTGCGCAGACGGTTCAGAGCGAGTAACTACCAGA
GCACGACCAGAGTGAAGCCCTTCATCTGCACAATGCCCATGAGACTGGAT
GATGGGTGGAACCAGATCCAATTCAACTTGTCAGACTTCACGAGGAGGGC
CTACGGGACCAACTACATCGAGACGCTGCGTGTCCAGATTCACGCCAACT
GCCGCATCCGCCGGGTCTACTTCTCCGACAGGTTGTACTCAGAAGACGAG
CTGCCAGCAGAATTCAAACTCTACCTACCAGTGCAGAACAAAGCAAAGGT
TTGAATGGTGCGAAATGGCCACATCAAGAGGATCACAGACAACGACATCC
AGTCACTTGTACTCGAGATTTGTGGTACAAATGTCAGCACAACATATATC
ACCTGCCCGGCAGACCCAAAGAAAACCCTGGGAATCAAGTTGCCCTTCCT
CGTGATGATCATCAAGAATCTGAAGAAGTACTTCACCTTTGAGGTTCAGG
TCCTAGATGACAAGAACGTGCGCAGACGGTTCAGAGCGAGTAACTACCAG
AGCACGACCAGAGTGAAGCCCTTCATCTGCACAATGCCCATGAGACTGGA
TGATGGGTGGAACCAGATCCAATTCAACTTGTCAGACTTCACGAGGAGGG
CCTACGGGACCAACTACATCGAGACGCTGCGTGTCCAGATTCACGCCAAC
TGCCGCATCCGCCGGGTCTACTTCTCCGACAGGTTGTACTCAGAAGACGA
GCTGCCAGCAGAATTCAAACTCTACCTACCAGTGCAGAACAAAGCAAAGG
TTTGAATGGTGCGAAATGGCCACATCAAGAGGATCACAGACAACGACATC
CAGTCACTTGTACTCGAGATTTGTGGTACAAATGTCAGCACAACATATAT
CACCTGCCCGGCAGACCCAAAGAAAACCCTGGGAATCAAGTTGCCCTTCC
TCGTGATGATCATCAAGAATCTGAAGAAGTACTTCACCTTTGAGGTTCAG
GTCCTAGATGACAAGAACGTGCGCAGACGGTTCAGAGCGAGTAACTACCA
GAGCACGACCAGAGTGAAGCCCTTCATCTGCACAATGCCCATGAGACTGG
ATGATGGGTGGAACCAGATCCAATTCAACTTGTCAGACTTCACGAGGAGG
GCCTACGGGACCAACTACATCGAGACGCTGCGTGTCCAGATTCACGCCAA
CTGCCGCATCCGCCGGGTCTACTTCTCCGACAGGTTGTACTCAGAAGACG
AGCTGCCAGCAGAATTCAAACTCTACCTACCAGTGCAGAACAAAGCAAAG
GTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95093gene:BL95093Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95093_evm0transcript:BL95093_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95093_evm0-E1BL95093_evm0-E1-1564476830-58322Branchiostoma lanceolatumexon
BL95093_evm0-E2BL95093_evm0-E2-1564476830-58324Branchiostoma lanceolatumexon
BL95093_evm0-E3BL95093_evm0-E3-1564476830-58326Branchiostoma lanceolatumexon
BL95093_evm0-E4BL95093_evm0-E4-1564476830-58328Branchiostoma lanceolatumexon
BL95093_evm0-E5BL95093_evm0-E5-1564476830-58330Branchiostoma lanceolatumexon
BL95093_evm0-E6BL95093_evm0-E6-1564476830-58332Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000005genomeSc0000005:877590..880346 +
Properties
Property NameValue
Transcript idBL95093_evm0
Biotypeprotein_coding