transcript:BL95103_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95103_evm0
Unique Nametranscript:BL95103_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95103_evm0

>transcript:BL95103_evm0-protein ID=transcript:BL95103_evm0-protein|Name=transcript:BL95103_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=392bp
MATPDVIRIPQTAEDIAPSWVQQVLQRDVPGVIITDVDVKGSVSRGEGFM
SDVIAFDAGGTRDGGETVRYSLVAKLSDFTRPFAMVKTLTKEWLIRIERD
EAEFYSSVVPDLFSVADNSAKHTSEPNGKDEDVLPSTGSLFLPKCYFAAT
DPNTMVSVRVMENLKAQGFSIKRDLQLLSREEMMLTVGALAQLHGLSHRL
ELRSGAPLPEKYGFLIKPSPDVVTTLYQSAVKTFTAAFPDQKDLVARLEK
LDPQDIQLDAEKSPRLKVLNHGDCWIINILFKPMAVKLVDWQLPQYLPPT
YDLAFLFFCSTGWDVFHNHRDAILAHYHRQLMDTLGQEETSGLQSYTLEQ
LKEDFKVDCQYGVVSRFIRLMALPIDADLLRMVQEVMEWGAL
Run BLAST on NCBI

mRNA from alignment at Sc0000005:7135733..7137247+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95103_evm0 ID=transcript:BL95103_evm0|Name=transcript:BL95103_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=1515bp|location=Sequence derived from alignment at Sc0000005:7135733..7137247+ (Branchiostoma lanceolatum)
ATGGCAACGCCAGACGTGATCCGCATTCCACAGACTGCTGAAGACATCGC
CCCCTCCTGGGTGCAGCAGGTACTGCAGAGAGACGTCCCTGGCGTCATCA
TCACGGACGTCGATGTGAAGGGATCCGTCAGCCGAGGCGAGGGATTCATG
AGTGACGTCATCGCGTTTGATGCCGGTGGGACCAGGGATGGTGGTGAGAC
AGTGCGCTACAGTCTCGTCGCTAAACTGTCTGACTTCACGCGGCCGTTTG
CTATGGTCAAAACGCTCACAAAAGAATGGCTAATCAGAATTGAGAGGGAT
GAAGCCGAGTTTTACTCAAGTGTGGTCCCCGATCTCTTCTCGGTGGCTGA
CAACAGCGCGAAGCACACATCGGAGCCAAACGGTAAAGACGAAGACGTTC
TGCCCTCGACTGGATCCTTGTTCCTCCCCAAATGCTACTTCGCCGCCACC
GACCCAAACACCATGGTGTCCGTCAGGGTTATGGAGAACCTGAAAGCTCA
GGGGTTCTCCATAAAACGCGACCTCCAACTGCTGAGCCGCGAGGAGATGA
TGCTGACCGTCGGGGCCCTGGCGCAGCTGCACGGCCTGTCCCACCGGCTG
GAGCTCCGGTCCGGCGCCCCTCTTCCCGAGAAGTACGGTTTTCTTATAAA
GCCTTCGCCTGACGTAGTCACCACCCTATATCAGAGCGCCGTCAAGACCT
TCACAGCAGCTTTCCCTGACCAGAAGGACCTCGTAGCTCGTCTGGAAAAA
TTAGACCCCCAGGATATTCAGCTCGATGCCGAGAAGAGTCCGAGGCTTAA
GGTGCTTAACCATGGAGATTGCTGGATCATCAACATCCTTTTTAAGGTAT
GCGTTCTTAGTGTGTTTATTTATTCATTATATACTCATTCTTGCGTTACT
TTTCTAAAAAATGTGCCAGCTTTTAAACGATTTTGTGTCATTTTTCTGTT
GTTGTATTCACGTCTACCTGAAACGCATGACGGAGACCAGCCCATGGCGG
TAAAGCTGGTGGACTGGCAGTTGCCTCAATATCTCCCGCCGACCTATGAC
CTGGCCTTCCTGTTCTTCTGTTCCACGGGTTGGGACGTGTTCCACAACCA
CCGGGACGCCATCCTGGCCCACTATCACCGACAACTGATGGACACGCTGG
GGCAGGAAGGTGGGAAGCAAACGCTTTTTCATTTCCCCCGCTTATTTGTT
TATGGAAACACTTAGCATGATATTCAAAAGAAACAAATGCTGTAAAGTAG
CTGTCAGGACAGACCAAGCTGGTACCTAATGATACCACATTCTCAGCATC
GCTTCGAAACAGCTTCATGTAAACAACATATTTCCTTTTTTTGCCTCCTA
GAAACCTCGGGCCTACAAAGCTACACCCTGGAGCAGTTGAAGGAAGACTT
CAAAGTCGACTGTCAGTACGGGGTAGTCAGCCGTTTCATACGTCTAATGG
CCTTGCCTATAGACGCGGATCTGCTGCGAATGGTTCAGGAGGTCATGGAG
TGGGGAGCTCTCTAG

Coding sequence (CDS) from alignment at Sc0000005:7135733..7137247+

>transcript:BL95103_evm0 ID=transcript:BL95103_evm0|Name=transcript:BL95103_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3537bp|location=Sequence derived from alignment at Sc0000005:7135733..7137247+ (Branchiostoma lanceolatum)
ATGGCAACGCCAGACGTGATCCGCATTCCACAGACTGCTGAAGACATCGC
CCCCTCCTGGGTGCAGCAGGTACTGCAGAGAGACGTCCCTGGCGTCATCA
TCACGGACGTCGATGTGAAGGGATCCGTCAGCCGAGGCGAGGGATTCATG
AGTGACGTCATCGCGTTTGATGCCGGTGGGACCAGGGATGGTGGTGAGAC
AGTGCGCTACAGTCTCGTCGCTAAACTGTCTGACTTCACGCGGCCGTTTG
CTATGGTCAAAACGCTCACAAAAGAATGGCTAATCAGAATTGAGAGGGAT
GAAGCCGAGTTTTACTCAAGTGTGGTCCCCGATCTCTTCTCGGTGGCTGA
CAACAGCGCGAAGCACACATCGGAGCCAAACGGTAAAGACGAAGACGTTC
TGCCCTCGACTGGATCCTTGTTCCTCCCCAAATGCTACTTCGCCGCCACC
GACCCAAACACCATGGTGTCCGTCAGGGTTATGGAGAACCTGAAAGCTCA
GGGGTTCTCCATAAAACGCGACCTCCAACTGCTGAGCCGCGAGGAGATGA
TGCTGACCGTCGGGGCCCTGGCGCAGCTGCACGGCCTGTCCCACCGGCTG
GAGCTCCGGTCCGGCGCCCCTCTTCCCGAGAAGTACGGTTTTCTTATAAA
GCCTTCGCCTGACGTAGTCACCACCCTATATCAGAGCGCCGTCAAGACCT
TCACAGCAGCTTTCCCTGACCAGAAGGACCTCGTAGCTCGTCTGGAAAAA
TTAGACCCCCAGGATATTCAGCTCGATGCCGAGAAGAGTCCGAGGCTTAA
GGTGCTTAACCATGGAGATTGCTGGATCATCAACATCCTTTTTAAGCCCA
TGGCGGTAAAGCTGGTGGACTGGCAGTTGCCTCAATATCTCCCGCCGACC
TATGACCTGGCCTTCCTGTTCTTCTGTTCCACGGGTTGGGACGTGTTCCA
CAACCACCGGGACGCCATCCTGGCCCACTATCACCGACAACTGATGGACA
CGCTGGGGCAGGAAGAAACCTCGGGCCTACAAAGCTACACCCTGGAGCAG
TTGAAGGAAGACTTCAAAGTCGACTGTCAGTACGGGGTAGTCAGCCGTTT
CATACGTCTAATGGCCTTGCCTATAGACGCGGATCTGCTGCGAATGGTTC
AGGAGGTCATGGAGTGGGGAGCTCTCTAGATGGCAACGCCAGACGTGATC
CGCATTCCACAGACTGCTGAAGACATCGCCCCCTCCTGGGTGCAGCAGGT
ACTGCAGAGAGACGTCCCTGGCGTCATCATCACGGACGTCGATGTGAAGG
GATCCGTCAGCCGAGGCGAGGGATTCATGAGTGACGTCATCGCGTTTGAT
GCCGGTGGGACCAGGGATGGTGGTGAGACAGTGCGCTACAGTCTCGTCGC
TAAACTGTCTGACTTCACGCGGCCGTTTGCTATGGTCAAAACGCTCACAA
AAGAATGGCTAATCAGAATTGAGAGGGATGAAGCCGAGTTTTACTCAAGT
GTGGTCCCCGATCTCTTCTCGGTGGCTGACAACAGCGCGAAGCACACATC
GGAGCCAAACGGTAAAGACGAAGACGTTCTGCCCTCGACTGGATCCTTGT
TCCTCCCCAAATGCTACTTCGCCGCCACCGACCCAAACACCATGGTGTCC
GTCAGGGTTATGGAGAACCTGAAAGCTCAGGGGTTCTCCATAAAACGCGA
CCTCCAACTGCTGAGCCGCGAGGAGATGATGCTGACCGTCGGGGCCCTGG
CGCAGCTGCACGGCCTGTCCCACCGGCTGGAGCTCCGGTCCGGCGCCCCT
CTTCCCGAGAAGTACGGTTTTCTTATAAAGCCTTCGCCTGACGTAGTCAC
CACCCTATATCAGAGCGCCGTCAAGACCTTCACAGCAGCTTTCCCTGACC
AGAAGGACCTCGTAGCTCGTCTGGAAAAATTAGACCCCCAGGATATTCAG
CTCGATGCCGAGAAGAGTCCGAGGCTTAAGGTGCTTAACCATGGAGATTG
CTGGATCATCAACATCCTTTTTAAGCCCATGGCGGTAAAGCTGGTGGACT
GGCAGTTGCCTCAATATCTCCCGCCGACCTATGACCTGGCCTTCCTGTTC
TTCTGTTCCACGGGTTGGGACGTGTTCCACAACCACCGGGACGCCATCCT
GGCCCACTATCACCGACAACTGATGGACACGCTGGGGCAGGAAGAAACCT
CGGGCCTACAAAGCTACACCCTGGAGCAGTTGAAGGAAGACTTCAAAGTC
GACTGTCAGTACGGGGTAGTCAGCCGTTTCATACGTCTAATGGCCTTGCC
TATAGACGCGGATCTGCTGCGAATGGTTCAGGAGGTCATGGAGTGGGGAG
CTCTCTAGATGGCAACGCCAGACGTGATCCGCATTCCACAGACTGCTGAA
GACATCGCCCCCTCCTGGGTGCAGCAGGTACTGCAGAGAGACGTCCCTGG
CGTCATCATCACGGACGTCGATGTGAAGGGATCCGTCAGCCGAGGCGAGG
GATTCATGAGTGACGTCATCGCGTTTGATGCCGGTGGGACCAGGGATGGT
GGTGAGACAGTGCGCTACAGTCTCGTCGCTAAACTGTCTGACTTCACGCG
GCCGTTTGCTATGGTCAAAACGCTCACAAAAGAATGGCTAATCAGAATTG
AGAGGGATGAAGCCGAGTTTTACTCAAGTGTGGTCCCCGATCTCTTCTCG
GTGGCTGACAACAGCGCGAAGCACACATCGGAGCCAAACGGTAAAGACGA
AGACGTTCTGCCCTCGACTGGATCCTTGTTCCTCCCCAAATGCTACTTCG
CCGCCACCGACCCAAACACCATGGTGTCCGTCAGGGTTATGGAGAACCTG
AAAGCTCAGGGGTTCTCCATAAAACGCGACCTCCAACTGCTGAGCCGCGA
GGAGATGATGCTGACCGTCGGGGCCCTGGCGCAGCTGCACGGCCTGTCCC
ACCGGCTGGAGCTCCGGTCCGGCGCCCCTCTTCCCGAGAAGTACGGTTTT
CTTATAAAGCCTTCGCCTGACGTAGTCACCACCCTATATCAGAGCGCCGT
CAAGACCTTCACAGCAGCTTTCCCTGACCAGAAGGACCTCGTAGCTCGTC
TGGAAAAATTAGACCCCCAGGATATTCAGCTCGATGCCGAGAAGAGTCCG
AGGCTTAAGGTGCTTAACCATGGAGATTGCTGGATCATCAACATCCTTTT
TAAGCCCATGGCGGTAAAGCTGGTGGACTGGCAGTTGCCTCAATATCTCC
CGCCGACCTATGACCTGGCCTTCCTGTTCTTCTGTTCCACGGGTTGGGAC
GTGTTCCACAACCACCGGGACGCCATCCTGGCCCACTATCACCGACAACT
GATGGACACGCTGGGGCAGGAAGAAACCTCGGGCCTACAAAGCTACACCC
TGGAGCAGTTGAAGGAAGACTTCAAAGTCGACTGTCAGTACGGGGTAGTC
AGCCGTTTCATACGTCTAATGGCCTTGCCTATAGACGCGGATCTGCTGCG
AATGGTTCAGGAGGTCATGGAGTGGGGAGCTCTCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95103gene:BL95103Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95103_evm0-E1BL95103_evm0-E1-1564476830-64077Branchiostoma lanceolatumexon
BL95103_evm0-E2BL95103_evm0-E2-1564476830-64079Branchiostoma lanceolatumexon
BL95103_evm0-E3BL95103_evm0-E3-1564476830-64081Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95103_evm0transcript:BL95103_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000005genomeSc0000005:7135733..7137247 +
Properties
Property NameValue
Transcript idBL95103_evm0
Biotypeprotein_coding