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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95108_evm1 >transcript:BL95108_evm1-protein ID=transcript:BL95108_evm1-protein|Name=transcript:BL95108_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=317bp
MAARGSRYGRRLLSSFLTVTLQTETGGANSRTAQGQAQGQSGQRAGGTLQ
AEVGCSAECPWLAGGDPGHGVPPDNLATAQPHRPTTWLQQRNTHGLAVPH
RRTYPGTVISTARPYPGVVLPTARCHTVTSHTFSTKLSPPQGGAACVHCC
TVHSSANVAQRSEEKQQAVQEDQKEEEEEEEDLDEKYRNLTLFQRFKYMV
KDYGHVLIPVHVATSLVWFGSFYYMAICGVDPVPLLEQIGLPHSWVETMK
KSGASDVMVAYAFYKIATPARYTVTLGGTTFTIRYLRKKGVMQKPPPSKH
MEKMKGFIQEKRDQMKK Run BLAST on NCBI mRNA from alignment at Sc0000005:7856552..7860400+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95108_evm1 ID=transcript:BL95108_evm1|Name=transcript:BL95108_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=3849bp|location=Sequence derived from alignment at Sc0000005:7856552..7860400+ (Branchiostoma lanceolatum)
ATGGCGGCTCGGGGGTCGCGGTACGGGCGCAGACTGCTGTCCAGCTTCCT
GACGGTCACTCTGCAGACGGAGACGGGCGGCGCGAACAGCCGAACGGCGC
AGGGACAGGCGCAAGGTCAGTCCGGGCAGCGCGCTGGCGGCACGCTACAA
GCAGAGGTTGGGTGGGGAGGCTAGCGGATGGGGGAGGGTGCGGGTTCTCT
CCAAGCAGAGGTTCGGTGGGGAGGCTAGTGGATGGAGGGAGGGTAAGGGT
TCTCTCCAAGCAGAGGTTCGGTGGGGAGGCTAGTGGACGGAGGGAGGGTA
CGAGTGCTCTCCAAGCAGAGGTTCGGTGGGGAGGCTAGCGGATGGGGGAG
GGTAGCATGATTCTTCAAGCAGAGGTTGGGTGGGGAGATCTTTTACCTTT
GAAAAGTTTGATTGGCAGCTGTGAGTGTCAGTAAGATGGTCAAGTCAGAA
AAAAACTACGACACTTGACCTCCTGCTACCCCCATCTTCTTCTTTACTGC
TTAGCCTCATATCTGAGATAATCAGCAGTTGCGCATGGGTTAGATACATC
ACATTAGTGCCTAGTACAAATAAAACGAAGGGAACATAAAGGAAAGGCAC
TAAGGAACAAAAAGAACTGAATTTGTGTGTGTAAAGGACAGGACAACTGA
CATCTGGATGCCTCCAACCTTTTCCACAAGTGTAGAGTAGAATAGAGTCA
AATTAGAGTAGATTACAGTAGATTACAGTAGAGTAGAGAAGAGTAGAGTA
GAGTAGAGTAGAGTAGAGTTAGAGTAGAGTAGAGTCAGAGTAGAGTCGAG
TCAAAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGA
GTAGAGTTAAAGTAGAGTAGAGTCAGAGTAGAGTCGAGTCAAAGTAGAGT
AGAGTTGAGTCAAAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGAG
TAGAGTAGAGTAGAGTAGAGTAGAGCCAACGTAGAGTCGAGTAGAGTCAA
GTCAAACTCAAAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTA
GAGTAGAGTAGAGTAGAGTAGAGTAGAGTCAAGTCAAAGTAGAGTAGAGT
AGAGTAGAGTCAACGTAGAGTCGAGTAGAGTCGAGTCAAAGTAGAGTAGG
GGGGATCCTATGTTTCACCTCGCCTCGTTTTACTGATGCTGCTCCCTTCT
GCTCTGCCAGGTGTTCTGCGGAGTGTCCATGGCTGGCAGGAGGGGATCCG
GGACATGGTGTCCCGCCCGACAACCTGGCTACAGCAGCCACACCGCCCGA
CAACCTGGCTACAGCAGCCACACCGCCCGACAACCTGGCTACAGCAGCCA
CACCGCCCGACAACCTGGCTACAGCAGCCACACCGCCCGACAACCTGGCT
ACAGCAGCCACACCGCCCGACAACCTGGCTACAGCAGCCACACCGCCCGA
CAACCTGGCTACAGCAGCCACACCGCCCGACAACCTGGCTACAGCAGCCA
CACCGCCCGACAACCTGGCTACAGCAGCCACACCGCCCGACAACCTGGCT
ACAGCAGCGAAACACACACGGCCTAGCTGTGCCCCACCGGAGGACTTACC
CAGGCACGGTCATCTCCACAGCCAGGCCTTACCCAGGAGTGGTGCTCCCC
ACAGCCAGATGTCACACCGTAACTTCTCACACATTCAGCACCAAACTCTC
CCCCCCACAGGGCGGGGCCGCCTGCGTCCACTGCTGTACTGTCCACAGCT
CTGCGAACGTTGCTCAGAGGAGCGAGGAGAAACAGCAGGCAGTTCAGGAG
GACCAGAAGGAGGAGGAGGAGGAAGAGGAGGATCTGGATGAGAAGTACCG
GAACCTGACGTTGTTCCAGAGGTTCAAGTACATGGTGAAGGATTATGGGC
ATGTTCTGATCCCGGTACACGTTGCCACATCGCTCGTCTGGTTCGGCTCT
TTCTACTACATGGCCATATGGTGAGCTGCACTCTCACCTGCAGTCTTTGT
GTCCTGTTTCTGTCCTGGAGTTTAACTAATTCTGTCTTATTTGTGTCCTG
TAGTTGTACTGATTTTGTTCTGATTGTGTCCTGCTTCTGCTCAATAGTGG
TACTGATTCTGTCTCGTAGTGGCGTTGATTCTGTCCTGTAGTGGTACTGA
TTCTGTGCTGATTCTGTCCTGTAGTGGTACTGATTCTGTGCTGTTTCTGT
CCTGTAGTGACACTGATTTTGTCCTGTAGTGGTACTGATTCTGTGCTGAT
TCTGTCCTGTAGTGGTACTGATTCTGTGCTGATTCTGTCCTGTAGTGGTA
CTGATTCTGTGCTGATTCTGTCCTGTAGTGGTACTGATTCTGTGCTGATT
CTGTCCTGTAGTGGTACTGATTCTGTGCTGATTCTGTCCTGTAGTGGTAC
TGATTCTGTGCTGATTCTGTCCTGTAGTGGTACTGATTCTGTGCTGATTT
TGTCCTGTAGTGGTACTGATTCTGTGCTGATTCTGTCCTGTAGTGGTACT
GATTCTGTGCTGATTCTGTCCTGTAGTGGTACTGATTCTGTAGACTCTAC
CAGTCTCCCCCGGTCGCTGGGAAAATAGTAGAAATTGGCCAAATAGAGTA
AAATGTTTGAAGGGAGTTGGCTACGGAGAGAGGGTCAAATTGGCAACCGA
GGAGACTGTCCTGTAGTGGCACTGATTTTGTCCTGCAATGGTACTGATTC
TGTGCTGTTTCTGTTCTGTAGTGGTACTGATTCTGTGCTGATTCTGTCCT
GTAGTGGTACTGATTCTGTGCTGATTCTGTCCTGTAGTGGTACTGATTCT
GTGCTGATTCTGTCCTGTAGTGGCACTGACTTTGTCCTGTAGTGGTACTG
ATTCTGTGCTGATTCTGTCCTGTAGTGGTACTGATTCTGTGCTGATTTTG
TCCTGTAGTGGTACTGATTCTGTGCTGATTCTGTCCTGTAGTGGTACTGA
TTCTGTGCTGATTCTGTCCTGTAGTGGCACTGATTTTGTCCTGCAATGGT
ACTGATTCTGTGCTGTTTCTGTTCTGTAGTGGTACTGATTCTGTGCTGTT
TCTGTCCTGTAGTGGTGTAGATCCAGTTCCGCTCCTGGAGCAGATCGGCC
TGCCGCACTCCTGGGTGGAAACCATGAAGAAGTCTGGAGCCTCGGACGTG
ATGGTGGCCTACGCTTTCTACAAGGTATGACACAACCAGTTACGCTTTCT
ACAAGGTATGACACAACCAGTTACGCTTTCTACAAGGTATGACACAACCA
GTTACGCTTTCTACAAGGTACAAGACTTCACATATTGCAGAACAATTATG
CTTCCTACAAGGTAGTAGACTTGGAAATATTACAGAACAGTTACCATGTA
CAGGTACAAAGAGTGAATTATGTTAGAATTGTATACTAGTAAGCTGTGGA
TCTTGTTATTGTAACTGGCCATATCCCTGTTTATATAAGGTGGGAATCCA
ATCATTATTTTCACACCAGATTACCTGTAAGATTTACCTGGTGTCAACTC
ACTCACCTTCCCTTCATCTACACCTGAGCAAACAATAGACAAACATCACT
AACTTTGTCTTCTATACCTATTTAGACCATTACTGTTTATGACAGAAAAA
ATCCTGACAAAGGAAAAACGATGTTATTTGTGCTTGGATAGATTCTGTGA
GGAGGATTTCCCAGTATCTATGTACTCCTTTCTCCCCCAGATCGCGACCC
CTGCCCGGTACACGGTGACGTTGGGCGGCACGACTTTCACGATACGCTAC
CTGCGCAAGAAGGGCGTCATGCAGAAACCTCCGCCCTCCAAACACATGGA
GAAGATGAAGGGCTTCATACAGGAGAAGAGAGACCAGATGAAAAAATAA Coding sequence (CDS) from alignment at Sc0000005:7856552..7860400+ >transcript:BL95108_evm1 ID=transcript:BL95108_evm1|Name=transcript:BL95108_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=4770bp|location=Sequence derived from alignment at Sc0000005:7856552..7860400+ (Branchiostoma lanceolatum)
ATGGCGGCTCGGGGGTCGCGGTACGGGCGCAGACTGCTGTCCAGCTTCCT
GACGGTCACTCTGCAGACGGAGACGGGCGGCGCGAACAGCCGAACGGCGC
AGGGACAGGCGCAAGGTCAGTCCGGGCAGCGCGCTGGCGGCACGCTACAA
GCAGAGGTTGGGTGTTCTGCGGAGTGTCCATGGCTGGCAGGAGGGGATCC
GGGACATGGTGTCCCGCCCGACAACCTGGCTACAGCACAGCCACACCGCC
CGACAACCTGGCTACAGCAGCGAAACACACACGGCCTAGCTGTGCCCCAC
CGGAGGACTTACCCAGGCACGGTCATCTCCACAGCCAGGCCTTACCCAGG
AGTGGTGCTCCCCACAGCCAGATGTCACACCGTAACTTCTCACACATTCA
GCACCAAACTCTCCCCCCCACAGGGCGGGGCCGCCTGCGTCCACTGCTGT
ACTGTCCACAGCTCTGCGAACGTTGCTCAGAGGAGCGAGGAGAAACAGCA
GGCAGTTCAGGAGGACCAGAAGGAGGAGGAGGAGGAAGAGGAGGATCTGG
ATGAGAAGTACCGGAACCTGACGTTGTTCCAGAGGTTCAAGTACATGGTG
AAGGATTATGGGCATGTTCTGATCCCGGTACACGTTGCCACATCGCTCGT
CTGGTTCGGCTCTTTCTACTACATGGCCATATGTGGTGTAGATCCAGTTC
CGCTCCTGGAGCAGATCGGCCTGCCGCACTCCTGGGTGGAAACCATGAAG
AAGTCTGGAGCCTCGGACGTGATGGTGGCCTACGCTTTCTACAAGATCGC
GACCCCTGCCCGGTACACGGTGACGTTGGGCGGCACGACTTTCACGATAC
GCTACCTGCGCAAGAAGGGCGTCATGCAGAAACCTCCGCCCTCCAAACAC
ATGGAGAAGATGAAGGGCTTCATACAGGAGAAGAGAGACCAGATGAAAAA
ATAAATGGCGGCTCGGGGGTCGCGGTACGGGCGCAGACTGCTGTCCAGCT
TCCTGACGGTCACTCTGCAGACGGAGACGGGCGGCGCGAACAGCCGAACG
GCGCAGGGACAGGCGCAAGGTCAGTCCGGGCAGCGCGCTGGCGGCACGCT
ACAAGCAGAGGTTGGGTGTTCTGCGGAGTGTCCATGGCTGGCAGGAGGGG
ATCCGGGACATGGTGTCCCGCCCGACAACCTGGCTACAGCACAGCCACAC
CGCCCGACAACCTGGCTACAGCAGCGAAACACACACGGCCTAGCTGTGCC
CCACCGGAGGACTTACCCAGGCACGGTCATCTCCACAGCCAGGCCTTACC
CAGGAGTGGTGCTCCCCACAGCCAGATGTCACACCGTAACTTCTCACACA
TTCAGCACCAAACTCTCCCCCCCACAGGGCGGGGCCGCCTGCGTCCACTG
CTGTACTGTCCACAGCTCTGCGAACGTTGCTCAGAGGAGCGAGGAGAAAC
AGCAGGCAGTTCAGGAGGACCAGAAGGAGGAGGAGGAGGAAGAGGAGGAT
CTGGATGAGAAGTACCGGAACCTGACGTTGTTCCAGAGGTTCAAGTACAT
GGTGAAGGATTATGGGCATGTTCTGATCCCGGTACACGTTGCCACATCGC
TCGTCTGGTTCGGCTCTTTCTACTACATGGCCATATGTGGTGTAGATCCA
GTTCCGCTCCTGGAGCAGATCGGCCTGCCGCACTCCTGGGTGGAAACCAT
GAAGAAGTCTGGAGCCTCGGACGTGATGGTGGCCTACGCTTTCTACAAGA
TCGCGACCCCTGCCCGGTACACGGTGACGTTGGGCGGCACGACTTTCACG
ATACGCTACCTGCGCAAGAAGGGCGTCATGCAGAAACCTCCGCCCTCCAA
ACACATGGAGAAGATGAAGGGCTTCATACAGGAGAAGAGAGACCAGATGA
AAAAATAAATGGCGGCTCGGGGGTCGCGGTACGGGCGCAGACTGCTGTCC
AGCTTCCTGACGGTCACTCTGCAGACGGAGACGGGCGGCGCGAACAGCCG
AACGGCGCAGGGACAGGCGCAAGGTCAGTCCGGGCAGCGCGCTGGCGGCA
CGCTACAAGCAGAGGTTGGGTGTTCTGCGGAGTGTCCATGGCTGGCAGGA
GGGGATCCGGGACATGGTGTCCCGCCCGACAACCTGGCTACAGCACAGCC
ACACCGCCCGACAACCTGGCTACAGCAGCGAAACACACACGGCCTAGCTG
TGCCCCACCGGAGGACTTACCCAGGCACGGTCATCTCCACAGCCAGGCCT
TACCCAGGAGTGGTGCTCCCCACAGCCAGATGTCACACCGTAACTTCTCA
CACATTCAGCACCAAACTCTCCCCCCCACAGGGCGGGGCCGCCTGCGTCC
ACTGCTGTACTGTCCACAGCTCTGCGAACGTTGCTCAGAGGAGCGAGGAG
AAACAGCAGGCAGTTCAGGAGGACCAGAAGGAGGAGGAGGAGGAAGAGGA
GGATCTGGATGAGAAGTACCGGAACCTGACGTTGTTCCAGAGGTTCAAGT
ACATGGTGAAGGATTATGGGCATGTTCTGATCCCGGTACACGTTGCCACA
TCGCTCGTCTGGTTCGGCTCTTTCTACTACATGGCCATATGTGGTGTAGA
TCCAGTTCCGCTCCTGGAGCAGATCGGCCTGCCGCACTCCTGGGTGGAAA
CCATGAAGAAGTCTGGAGCCTCGGACGTGATGGTGGCCTACGCTTTCTAC
AAGATCGCGACCCCTGCCCGGTACACGGTGACGTTGGGCGGCACGACTTT
CACGATACGCTACCTGCGCAAGAAGGGCGTCATGCAGAAACCTCCGCCCT
CCAAACACATGGAGAAGATGAAGGGCTTCATACAGGAGAAGAGAGACCAG
ATGAAAAAATAAATGGCGGCTCGGGGGTCGCGGTACGGGCGCAGACTGCT
GTCCAGCTTCCTGACGGTCACTCTGCAGACGGAGACGGGCGGCGCGAACA
GCCGAACGGCGCAGGGACAGGCGCAAGGTCAGTCCGGGCAGCGCGCTGGC
GGCACGCTACAAGCAGAGGTTGGGTGTTCTGCGGAGTGTCCATGGCTGGC
AGGAGGGGATCCGGGACATGGTGTCCCGCCCGACAACCTGGCTACAGCAC
AGCCACACCGCCCGACAACCTGGCTACAGCAGCGAAACACACACGGCCTA
GCTGTGCCCCACCGGAGGACTTACCCAGGCACGGTCATCTCCACAGCCAG
GCCTTACCCAGGAGTGGTGCTCCCCACAGCCAGATGTCACACCGTAACTT
CTCACACATTCAGCACCAAACTCTCCCCCCCACAGGGCGGGGCCGCCTGC
GTCCACTGCTGTACTGTCCACAGCTCTGCGAACGTTGCTCAGAGGAGCGA
GGAGAAACAGCAGGCAGTTCAGGAGGACCAGAAGGAGGAGGAGGAGGAAG
AGGAGGATCTGGATGAGAAGTACCGGAACCTGACGTTGTTCCAGAGGTTC
AAGTACATGGTGAAGGATTATGGGCATGTTCTGATCCCGGTACACGTTGC
CACATCGCTCGTCTGGTTCGGCTCTTTCTACTACATGGCCATATGTGGTG
TAGATCCAGTTCCGCTCCTGGAGCAGATCGGCCTGCCGCACTCCTGGGTG
GAAACCATGAAGAAGTCTGGAGCCTCGGACGTGATGGTGGCCTACGCTTT
CTACAAGATCGCGACCCCTGCCCGGTACACGGTGACGTTGGGCGGCACGA
CTTTCACGATACGCTACCTGCGCAAGAAGGGCGTCATGCAGAAACCTCCG
CCCTCCAAACACATGGAGAAGATGAAGGGCTTCATACAGGAGAAGAGAGA
CCAGATGAAAAAATAAATGGCGGCTCGGGGGTCGCGGTACGGGCGCAGAC
TGCTGTCCAGCTTCCTGACGGTCACTCTGCAGACGGAGACGGGCGGCGCG
AACAGCCGAACGGCGCAGGGACAGGCGCAAGGTCAGTCCGGGCAGCGCGC
TGGCGGCACGCTACAAGCAGAGGTTGGGTGTTCTGCGGAGTGTCCATGGC
TGGCAGGAGGGGATCCGGGACATGGTGTCCCGCCCGACAACCTGGCTACA
GCACAGCCACACCGCCCGACAACCTGGCTACAGCAGCGAAACACACACGG
CCTAGCTGTGCCCCACCGGAGGACTTACCCAGGCACGGTCATCTCCACAG
CCAGGCCTTACCCAGGAGTGGTGCTCCCCACAGCCAGATGTCACACCGTA
ACTTCTCACACATTCAGCACCAAACTCTCCCCCCCACAGGGCGGGGCCGC
CTGCGTCCACTGCTGTACTGTCCACAGCTCTGCGAACGTTGCTCAGAGGA
GCGAGGAGAAACAGCAGGCAGTTCAGGAGGACCAGAAGGAGGAGGAGGAG
GAAGAGGAGGATCTGGATGAGAAGTACCGGAACCTGACGTTGTTCCAGAG
GTTCAAGTACATGGTGAAGGATTATGGGCATGTTCTGATCCCGGTACACG
TTGCCACATCGCTCGTCTGGTTCGGCTCTTTCTACTACATGGCCATATGT
GGTGTAGATCCAGTTCCGCTCCTGGAGCAGATCGGCCTGCCGCACTCCTG
GGTGGAAACCATGAAGAAGTCTGGAGCCTCGGACGTGATGGTGGCCTACG
CTTTCTACAAGATCGCGACCCCTGCCCGGTACACGGTGACGTTGGGCGGC
ACGACTTTCACGATACGCTACCTGCGCAAGAAGGGCGTCATGCAGAAACC
TCCGCCCTCCAAACACATGGAGAAGATGAAGGGCTTCATACAGGAGAAGA
GAGACCAGATGAAAAAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:7856552..7860400 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95108_evm1 |
| Biotype | protein_coding |
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