transcript:BL95283_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95283_evm0
Unique Nametranscript:BL95283_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95283_evm0

>transcript:BL95283_evm0-protein ID=transcript:BL95283_evm0-protein|Name=transcript:BL95283_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
MASHDISQEIQDNVLSCAICNNHLTEPKALPCLHTYCCKCLQELATSRRT
GAWFRCPECRKVVEVPIGGVQAFPTNFLVANVLEKVQQCKEDRKKQAVET
DMCDVHKQEAQVLRHLKQLNTEQNRPHHYWERWVA
Run BLAST on NCBI

mRNA from alignment at Sc0000017:1941292..1942651-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95283_evm0 ID=transcript:BL95283_evm0|Name=transcript:BL95283_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=1360bp|location=Sequence derived from alignment at Sc0000017:1941292..1942651- (Branchiostoma lanceolatum)
ATGGCATCCCACGACATTTCCCAAGAGATCCAGGACAATGTGCTGAGCTG TGCTATCTGTAACAACCACCTGACAGAACCCAAGGCTCTGCCCTGTCTGC ATACGTACTGCTGTAAGTGTTTACAGGAGCTGGCCACGTCCAGGCGGACT GGCGCATGGTTCCGTTGTCCAGAGTGCAGGTACATGTCTTGTATTACTGT ATCCTATTCAGATTTGCATAGGATACATGTACATCATCGGGTATTGCATA GGGTTCATCTAAATCGGGAAAGAGAGGCACAGTGCCCTCTTGTTTCAGTC CAGCGCCCCCTTGTCAAATTCAGATTTTAGCATGATATCCAGCATACAGA CTTCTCTCAGCAATTGATTCTGCCATGAATACATAGAATTCACTCCCTCG CCTCCCTCTTGTTCAATTTTTATAGAAAAAAAAACGGGACTCAATACTCT AAATGTTGACATTTTTACGATGGTTTAGTGTTCATGGTTTTCATGTTAAT GTTTCCCTATGAGCTTAAAACTCCTACACCGAAAAAGCGTATCAAATATT TTGCTCCATGTTCGTCATCTTTTAGAATTTTTTATTTTATTTGTGCCATA CATCTAGGGTTGTTAAACGCTCTCTCTCTATATATAAACTTTTACTTCAT GTACTGGAGCTGAAAGATTTCCCAAATTTTGTTGTTTTCCAGAAAAGTAG TTGAGGTTCCAATAGGGGGAGTGCAAGCCTTCCCCACAAACTTCCTGGTG GCAAATGTCCTGGAGAAGGTGCAGCAGTGCAAAGAAGATAGGAAAAAACA AGCAGTCGAGACCGACATGTGTGACGTTCACAAACAGGAGGCCCAAGTGG TGTGTGACACCTGTAATGTTGTTGTCTGCAACGTCTGCTTGAAATCTGGC CACAAGGAACACGTTCTGAAACACATCGACCAAGAAAAAGCCAAAAAGAT AAAACAATTAGAAAAGCTTATTAAGGAAACTACGGATGTTTCAGGCGATC TCTCTCATGTGAAACTACGTCTGCAAGAAAAGCACAAAGAGGTCAGAAGA CGAATCGAATCGAGGGCAGCAGTGGTCATTCATAAAGTCGAGTGTCAGAA AAAGAGCCTTCTAGAAGAAATCGACAAACAGAAGGAAAGAAAACTTGAAA AAATCGTCAGGATAGAGAGGCAGCACAGCGGACAAAAACGCAAGATGGCT GCCAAACTTTCAGCTGTAAAGGCGATTAGGAACAACAACAAACAGTTGCT ATACAAAAGCATTTTGTCTCACATCTCCTGCCTAACAGCTGCGACATCTG AAACAGCTGAATACCGAGCAAAACAGGCCGCACCACTACTGGGAGAGGTG GGTCGCCTGA

Coding sequence (CDS) from alignment at Sc0000017:1941292..1942651-

>transcript:BL95283_evm0 ID=transcript:BL95283_evm0|Name=transcript:BL95283_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1224bp|location=Sequence derived from alignment at Sc0000017:1941292..1942651- (Branchiostoma lanceolatum)
ATGGCATCCCACGACATTTCCCAAGAGATCCAGGACAATGTGCTGAGCTG
TGCTATCTGTAACAACCACCTGACAGAACCCAAGGCTCTGCCCTGTCTGC
ATACGTACTGCTGTAAGTGTTTACAGGAGCTGGCCACGTCCAGGCGGACT
GGCGCATGGTTCCGTTGTCCAGAGTGCAGAAAAGTAGTTGAGGTTCCAAT
AGGGGGAGTGCAAGCCTTCCCCACAAACTTCCTGGTGGCAAATGTCCTGG
AGAAGGTGCAGCAGTGCAAAGAAGATAGGAAAAAACAAGCAGTCGAGACC
GACATGTGTGACGTTCACAAACAGGAGGCCCAAGTGCTGCGACATCTGAA
ACAGCTGAATACCGAGCAAAACAGGCCGCACCACTACTGGGAGAGGTGGG
TCGCCTGAATGGCATCCCACGACATTTCCCAAGAGATCCAGGACAATGTG
CTGAGCTGTGCTATCTGTAACAACCACCTGACAGAACCCAAGGCTCTGCC
CTGTCTGCATACGTACTGCTGTAAGTGTTTACAGGAGCTGGCCACGTCCA
GGCGGACTGGCGCATGGTTCCGTTGTCCAGAGTGCAGAAAAGTAGTTGAG
GTTCCAATAGGGGGAGTGCAAGCCTTCCCCACAAACTTCCTGGTGGCAAA
TGTCCTGGAGAAGGTGCAGCAGTGCAAAGAAGATAGGAAAAAACAAGCAG
TCGAGACCGACATGTGTGACGTTCACAAACAGGAGGCCCAAGTGCTGCGA
CATCTGAAACAGCTGAATACCGAGCAAAACAGGCCGCACCACTACTGGGA
GAGGTGGGTCGCCTGAATGGCATCCCACGACATTTCCCAAGAGATCCAGG
ACAATGTGCTGAGCTGTGCTATCTGTAACAACCACCTGACAGAACCCAAG
GCTCTGCCCTGTCTGCATACGTACTGCTGTAAGTGTTTACAGGAGCTGGC
CACGTCCAGGCGGACTGGCGCATGGTTCCGTTGTCCAGAGTGCAGAAAAG
TAGTTGAGGTTCCAATAGGGGGAGTGCAAGCCTTCCCCACAAACTTCCTG
GTGGCAAATGTCCTGGAGAAGGTGCAGCAGTGCAAAGAAGATAGGAAAAA
ACAAGCAGTCGAGACCGACATGTGTGACGTTCACAAACAGGAGGCCCAAG
TGCTGCGACATCTGAAACAGCTGAATACCGAGCAAAACAGGCCGCACCAC
TACTGGGAGAGGTGGGTCGCCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95283gene:BL95283Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95283_evm0-E1BL95283_evm0-E1-1564476830-133676Branchiostoma lanceolatumexon
BL95283_evm0-E2BL95283_evm0-E2-1564476830-133674Branchiostoma lanceolatumexon
BL95283_evm0-E3BL95283_evm0-E3-1564476830-133672Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95283_evm0transcript:BL95283_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000017genomeSc0000017:1941292..1942651 -
Properties
Property NameValue
Transcript idBL95283_evm0
Biotypeprotein_coding