|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95342_evm1 >transcript:BL95342_evm1-protein ID=transcript:BL95342_evm1-protein|Name=transcript:BL95342_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=251bp
MVIRNYLAGKIPGELVFAVDRWPDYSAVMCAAGEGTYQFMQDMESYTFYW
ENEDGLLKLLRDVEMVDWDKNFTIAAFAEKGLPILRQACLEMGKPVPQEE
NLLQFHTAFNPKVLPTTDRLPDDMTLGRLERKHANLVSSTWAWGGSPKAL
EFIQYVLSTFPSKCVFNEKGEPLAFVVAKPWGEHGMARALVPGGYGTFVG
KHLINEILKAGDLPYVYVGQSNEKAKKIWNAEKTTKWDPSGSCFYVKFVK
D Run BLAST on NCBI mRNA from alignment at Sc0000024:1087368..1091007- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95342_evm1 ID=transcript:BL95342_evm1|Name=transcript:BL95342_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=3640bp|location=Sequence derived from alignment at Sc0000024:1087368..1091007- (Branchiostoma lanceolatum)
ATGGTTATTAGGTGACTGATCTCCTAACCTCATAGCCTCATGCAACACCA
AACATGACCAGTGACACATTGGAACAGCGTTACTAATATGCGACAGATCA
TTCAGGAGGGCCGGGAGTTTTGATAGTAAGGCCAAGGGAGTTTGGCGGTA
GAAACCTTAGTTATATTATTTGAATAAAGATACTGACAAGTTGTAAACAG
ATTATTAATGTTTCTGTCATTATTGAAGAAGTTCGGAAGAACACATGTTA
ATTGGTAAAATTGTTTAGGTACAGGTACAGGTCCGGACCTGTACCTAAAC
CTCTGTACCTGTACCTGATGTTAAGTTTAGGTACGCAGCACTATTCTATA
TCCCCTTTCTACACTGCCAGGAACTACCTAGCCGGTAAGATCCCGGGTGA
GCTGGTGTTTGCCGTGGACAGGTGGCCGGACTACTCCGCTGTCATGTGTG
CTGCAGGGGAGGGGACGTATCAGGTAGGCAAAGTTTCCAACCCTTCAAAC
AGTCGTCTCAGAATATAGTTGATAGTGGAATAATAATTGACGTAAACAAT
ACATCCCTTTACTTTGGCCATGTTGATTTGATTGTAGGGATGACATCCTC
TGGGGACCCCAAAACTGATTTATATACGAGCGTGTGAATTTAAAAAAAAA
AGTTGCATTTATTATGAAATCTACGCGGCCAGGAAGGATGAACAAAATCT
AGTACACAAAGTATGGTATACCGGATAATAGATTTTTCATTTTTGTTCTT
TCACATCTTCTTATTTGACATTAATATCCGTTTTCCGACATATTTTTTTG
CAATTTACAGCATATATTTTCTCATTTTGTAGCTGCTTTTTATGATTTAC
AGTATGGTCGAAAATCTTTTCTTTTTTTTGGAAACGGACAATAAGTGATT
CGCACAAGGGTGTCATTCGTATCAAATCAACATGTCCTTAGATTACAAAT
GCATCTATAAAGGGAGTCACACTTAAAAGTGGAATATGTACATTTTTGTA
TGTTGGCTCCTATAATATAATCATCGACCACCGAAGCTACCAGTCAATAA
TTGCCATAAACTATGGCCACTTAAAAGTGGAACATGTACACTGACAATTA
ATTGTTTTACATACCTTTTTGTATGTTGGCTCCTATATAATAATCATCGA
ATAAACCACCGAAGCTACCAGACAATAATTGCCATAAACTATGGCCACTT
AAAAGTGGAATTTGTACACTGACAATTAATTGTTTTACATACATTTTTGT
ATGTTGGTTCCTATATTATAATCATCGAATAAACCGTCGAAGCTACCAGT
CAATAATTGCAATAAACTATGTCCACTTAAAAGTGGAATTTTTACACTGA
CAATGAATTGTTTTACGTACCTTTTGTATGTTGGTTCCTACAATCATCGA
ATGAACCACCGAAGCTACCAGTCAATAATTGTCTTACGCTATGGCTGTTG
GCTAGCCGAAGATAAATGTTGAATGAATGAATGAAGACCTTTATTGCACA
TTTCTGACACACTTGGCTAAGTACAGGTCACAACAAAACAAAATAACAAG
TACAGTTAACGGGTACAAAAAGAATATGACTATCATTAGATAAATTCTAC
TTCTCCTCGCTTTAAGGTTATAGTAGATATAAAAGAACAGACGTTATTTT
CAACGGGAGGTTTGTCTAGTGAAGTAGGGAAATAGGTTTTATACAAGCTT
ATACAGTTCATTTCTTTCTTTGGTATATAATCCACATTCTACCACAAAAT
GGCATTCGTCTTCTATTCTATTCAAAGTACAACGGCCTGGGCATTAATAT
CAAATGCCGACTACTGATTGATCAATCACTTCATCTCTGCTATATGATTA
TGTTTGTTATATGTCAATAATGTTTGTTATACAACCCCAGTTTATGCAGG
ACATGGAGTCCTACACGTTCTACTGGGAGAATGAGGATGGTCTCCTGAAA
CTCCTCCGAGACGTCGAGATGGTAGACTGGGACAAGAACTTCACCATTGC
AGGTAAAAAAGACTAACAAACACAATGGCAATTTGCTTACATACCAAAAG
AAAAAAGAAAGTGAAGTCCCAAACTAATTGTGTACACCCTTCAGACATCA
GAGGGAGAATGTGGCCCAAACGCTGTGTCTTCAGGCTGCTTAAAGTCGCT
GAAATGTACACGTCCATATGGTGATGATTTCAGCCATTGTCAGTTTAACT
AGAGATGACCGCCAGAGTAAAGGCAGTAACCAACTCTTCTCCATACGTTA
ATGGAGGTTCAAGTCTTGTACAAAACTCTGAATTGATATGTTAATGAGGT
GAAGACAATTTTGGATGGTTCAATAGAAGACTAAGTCAAGACAATGTTGT
ATGCAAATAAATCAATGATAAGAAATGAATCAACTCTTTATTCCGCAGCA
TTTGCTGAAAAAGGACTACCAATCCTGAGGCAGGCGTGTCTGGAGATGGG
GAAACCGGTGCCACAGGAGGAAAATTTGCTTCAGTTTCACACCGCTTTCA
ATCCTAAAGTCTTGCCTACAACTGACAGGTACGTAGCCGCCAAAAGTTGT
ACTTGGGAATTATATTATCATATTCAACTTAGACGTCCAGTCTTAATCTG
AAAGATATATTGCTCCAGATGGCGGACTTGCTGGGACATTTTCTTTACAC
TGGTTTATGTATCGATCAGCTGTATCTGCTAGCAAAAACGTTATGGCTCG
TGGACATGCATAAGTACTTTGCATATGTACTTTGAAAGCCAGAAGAGAGA
ACCTATGTCTTACATTCGCTAAATCTCTATTGAATTCAAAAACATTTCGA
TGCTGGCTACCTCCCACTCGCGAAACAGTCCGCAATAGGGGCTTAAAGGG
GGGGGGGGGGGTCACAGCTTGACATTCCTTTCACCAGATCAGACAGTGCT
ATTCCATACTTGAACCAACTACTGAACAACAATTTGTAATGTAACGTTAT
ATATACGCTTACACCTACTGCAGGCTGTACGTATTGTCTTTTCTTTATTT
TTAGGTTGGTTAAGCGTTCTCTTTTGTACTTTTGATTTTTATACTGCGTA
ATTCTGCCACTGTAAAGAATGTAACATCGGTTGCAATGCTGTTTTAAGTT
TCGTATGTGCCAATCTCTGAAAAGTTATATACATGTAACCAAACTATGAC
AGTGCGGCCACCGAGCAGACTGTGCTTTTTACAAGCATTTCTTGTTACAT
TATAGTTCCTCTATTGATCGGCCATATCTCTCCAATTCAGGTTGCCCGAT
GACATGACATTGGGACGGCTTGAGCGGAAGCACGCAAATCTGGTGAGCAG
TACCTGGGCGTGGGGAGGGTCACCCAAAGCGCTGGAGTTCATCCAGTATG
TGCTGTCAACATTCCCCTCCAAATGTGTGTTCAATGAAAAGGGAGAGCCC
TTGGCGTTCGTCGTTGCCAAGCCGTGGGGGGAACACGGGATGGCCAGGGC
ACTGGTGCCTGGTGGGTACGGCACGTTTGTCGGGAAGCATTTGATCAACG
AGATTCTTAAGGCGGGGGACCTTCCGTACGTCTACGTAGGGCAAAGCAAT
GAAAAGGCGAAGAAAATCTGGAATGCAGAGAAGACCACAAAATGGGACCC
TTCTGGAAGTTGCTTCTATGTCAAGTTTGTGAAAGACTGA Coding sequence (CDS) from alignment at Sc0000024:1087368..1091007- >transcript:BL95342_evm1 ID=transcript:BL95342_evm1|Name=transcript:BL95342_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=3780bp|location=Sequence derived from alignment at Sc0000024:1087368..1091007- (Branchiostoma lanceolatum)
ATGGTTATTAGGAACTACCTAGCCGGTAAGATCCCGGGTGAGCTGGTGTT
TGCCGTGGACAGGTGGCCGGACTACTCCGCTGTCATGTGTGCTGCAGGGG
AGGGGACGTATCAGTTTATGCAGGACATGGAGTCCTACACGTTCTACTGG
GAGAATGAGGATGGTCTCCTGAAACTCCTCCGAGACGTCGAGATGGTAGA
CTGGGACAAGAACTTCACCATTGCAGCATTTGCTGAAAAAGGACTACCAA
TCCTGAGGCAGGCGTGTCTGGAGATGGGGAAACCGGTGCCACAGGAGGAA
AATTTGCTTCAGTTTCACACCGCTTTCAATCCTAAAGTCTTGCCTACAAC
TGACAGGTTGCCCGATGACATGACATTGGGACGGCTTGAGCGGAAGCACG
CAAATCTGGTGAGCAGTACCTGGGCGTGGGGAGGGTCACCCAAAGCGCTG
GAGTTCATCCAGTATGTGCTGTCAACATTCCCCTCCAAATGTGTGTTCAA
TGAAAAGGGAGAGCCCTTGGCGTTCGTCGTTGCCAAGCCGTGGGGGGAAC
ACGGGATGGCCAGGGCACTGGTGCCTGGTGGGTACGGCACGTTTGTCGGG
AAGCATTTGATCAACGAGATTCTTAAGGCGGGGGACCTTCCGTACGTCTA
CGTAGGGCAAAGCAATGAAAAGGCGAAGAAAATCTGGAATGCAGAGAAGA
CCACAAAATGGGACCCTTCTGGAAGTTGCTTCTATGTCAAGTTTGTGAAA
GACTGAATGGTTATTAGGAACTACCTAGCCGGTAAGATCCCGGGTGAGCT
GGTGTTTGCCGTGGACAGGTGGCCGGACTACTCCGCTGTCATGTGTGCTG
CAGGGGAGGGGACGTATCAGTTTATGCAGGACATGGAGTCCTACACGTTC
TACTGGGAGAATGAGGATGGTCTCCTGAAACTCCTCCGAGACGTCGAGAT
GGTAGACTGGGACAAGAACTTCACCATTGCAGCATTTGCTGAAAAAGGAC
TACCAATCCTGAGGCAGGCGTGTCTGGAGATGGGGAAACCGGTGCCACAG
GAGGAAAATTTGCTTCAGTTTCACACCGCTTTCAATCCTAAAGTCTTGCC
TACAACTGACAGGTTGCCCGATGACATGACATTGGGACGGCTTGAGCGGA
AGCACGCAAATCTGGTGAGCAGTACCTGGGCGTGGGGAGGGTCACCCAAA
GCGCTGGAGTTCATCCAGTATGTGCTGTCAACATTCCCCTCCAAATGTGT
GTTCAATGAAAAGGGAGAGCCCTTGGCGTTCGTCGTTGCCAAGCCGTGGG
GGGAACACGGGATGGCCAGGGCACTGGTGCCTGGTGGGTACGGCACGTTT
GTCGGGAAGCATTTGATCAACGAGATTCTTAAGGCGGGGGACCTTCCGTA
CGTCTACGTAGGGCAAAGCAATGAAAAGGCGAAGAAAATCTGGAATGCAG
AGAAGACCACAAAATGGGACCCTTCTGGAAGTTGCTTCTATGTCAAGTTT
GTGAAAGACTGAATGGTTATTAGGAACTACCTAGCCGGTAAGATCCCGGG
TGAGCTGGTGTTTGCCGTGGACAGGTGGCCGGACTACTCCGCTGTCATGT
GTGCTGCAGGGGAGGGGACGTATCAGTTTATGCAGGACATGGAGTCCTAC
ACGTTCTACTGGGAGAATGAGGATGGTCTCCTGAAACTCCTCCGAGACGT
CGAGATGGTAGACTGGGACAAGAACTTCACCATTGCAGCATTTGCTGAAA
AAGGACTACCAATCCTGAGGCAGGCGTGTCTGGAGATGGGGAAACCGGTG
CCACAGGAGGAAAATTTGCTTCAGTTTCACACCGCTTTCAATCCTAAAGT
CTTGCCTACAACTGACAGGTTGCCCGATGACATGACATTGGGACGGCTTG
AGCGGAAGCACGCAAATCTGGTGAGCAGTACCTGGGCGTGGGGAGGGTCA
CCCAAAGCGCTGGAGTTCATCCAGTATGTGCTGTCAACATTCCCCTCCAA
ATGTGTGTTCAATGAAAAGGGAGAGCCCTTGGCGTTCGTCGTTGCCAAGC
CGTGGGGGGAACACGGGATGGCCAGGGCACTGGTGCCTGGTGGGTACGGC
ACGTTTGTCGGGAAGCATTTGATCAACGAGATTCTTAAGGCGGGGGACCT
TCCGTACGTCTACGTAGGGCAAAGCAATGAAAAGGCGAAGAAAATCTGGA
ATGCAGAGAAGACCACAAAATGGGACCCTTCTGGAAGTTGCTTCTATGTC
AAGTTTGTGAAAGACTGAATGGTTATTAGGAACTACCTAGCCGGTAAGAT
CCCGGGTGAGCTGGTGTTTGCCGTGGACAGGTGGCCGGACTACTCCGCTG
TCATGTGTGCTGCAGGGGAGGGGACGTATCAGTTTATGCAGGACATGGAG
TCCTACACGTTCTACTGGGAGAATGAGGATGGTCTCCTGAAACTCCTCCG
AGACGTCGAGATGGTAGACTGGGACAAGAACTTCACCATTGCAGCATTTG
CTGAAAAAGGACTACCAATCCTGAGGCAGGCGTGTCTGGAGATGGGGAAA
CCGGTGCCACAGGAGGAAAATTTGCTTCAGTTTCACACCGCTTTCAATCC
TAAAGTCTTGCCTACAACTGACAGGTTGCCCGATGACATGACATTGGGAC
GGCTTGAGCGGAAGCACGCAAATCTGGTGAGCAGTACCTGGGCGTGGGGA
GGGTCACCCAAAGCGCTGGAGTTCATCCAGTATGTGCTGTCAACATTCCC
CTCCAAATGTGTGTTCAATGAAAAGGGAGAGCCCTTGGCGTTCGTCGTTG
CCAAGCCGTGGGGGGAACACGGGATGGCCAGGGCACTGGTGCCTGGTGGG
TACGGCACGTTTGTCGGGAAGCATTTGATCAACGAGATTCTTAAGGCGGG
GGACCTTCCGTACGTCTACGTAGGGCAAAGCAATGAAAAGGCGAAGAAAA
TCTGGAATGCAGAGAAGACCACAAAATGGGACCCTTCTGGAAGTTGCTTC
TATGTCAAGTTTGTGAAAGACTGAATGGTTATTAGGAACTACCTAGCCGG
TAAGATCCCGGGTGAGCTGGTGTTTGCCGTGGACAGGTGGCCGGACTACT
CCGCTGTCATGTGTGCTGCAGGGGAGGGGACGTATCAGTTTATGCAGGAC
ATGGAGTCCTACACGTTCTACTGGGAGAATGAGGATGGTCTCCTGAAACT
CCTCCGAGACGTCGAGATGGTAGACTGGGACAAGAACTTCACCATTGCAG
CATTTGCTGAAAAAGGACTACCAATCCTGAGGCAGGCGTGTCTGGAGATG
GGGAAACCGGTGCCACAGGAGGAAAATTTGCTTCAGTTTCACACCGCTTT
CAATCCTAAAGTCTTGCCTACAACTGACAGGTTGCCCGATGACATGACAT
TGGGACGGCTTGAGCGGAAGCACGCAAATCTGGTGAGCAGTACCTGGGCG
TGGGGAGGGTCACCCAAAGCGCTGGAGTTCATCCAGTATGTGCTGTCAAC
ATTCCCCTCCAAATGTGTGTTCAATGAAAAGGGAGAGCCCTTGGCGTTCG
TCGTTGCCAAGCCGTGGGGGGAACACGGGATGGCCAGGGCACTGGTGCCT
GGTGGGTACGGCACGTTTGTCGGGAAGCATTTGATCAACGAGATTCTTAA
GGCGGGGGACCTTCCGTACGTCTACGTAGGGCAAAGCAATGAAAAGGCGA
AGAAAATCTGGAATGCAGAGAAGACCACAAAATGGGACCCTTCTGGAAGT
TGCTTCTATGTCAAGTTTGTGAAAGACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000024 | genome | Sc0000024:1087368..1091007 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95342_evm1 |
| Biotype | protein_coding |
|
