transcript:BL95764_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95764_evm0
Unique Nametranscript:BL95764_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95764_evm0

>transcript:BL95764_evm0-protein ID=transcript:BL95764_evm0-protein|Name=transcript:BL95764_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=230bp
MAGRQFMFLYNFWSLPKSANVVKSLEGWFYVTARSIWDPSFVSTHFHKNL
DPEAEKIQFFNFGVSQGKPWQPSMDVIHEADKIIPEGVLRQPGGFAQVAV
SDPAQKPTLFPYERPATSRFVVTAFQVPDAVPAEEFEANWKDWSGVSLLE
KEAAPETGYAHSALYKKVSPMGDFRFVTRSEFSGLHDKHDDGMRLVGKVR
ERFGSGSAAALNIKSYSSLFKVAIDVHQPE
Run BLAST on NCBI

mRNA from alignment at Sc0000109:633022..638113-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95764_evm0 ID=transcript:BL95764_evm0|Name=transcript:BL95764_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=5092bp|location=Sequence derived from alignment at Sc0000109:633022..638113- (Branchiostoma lanceolatum)
ATGGCCGGTCGGCAGTTCATGTTTCTGTACAACTTCTGGAGCCTCCCGAA
GAGTGCTAACGTGGTGAAGTCATTGGAAGGATGGTTCTACGTTACCGCCC
GCAGTATCTGGGACCCGAGTTTTGTTTCTACCCACTTCCACAAGAACCTG
GACCCCGAAGGTAGGTCTTTTTGATCTGGCGACCATTTTTAAACTCCAGT
CGTCATGATCGCAAAGATTCGTGTTTACGGGTCATGTGCTGTTAAGTGGT
TGAACGACTATCTTAAGTGCCTTCTGAGTTCTACAAGGCTAACCTTTCTT
ATTGATACCACTAATGTTTGAATAGTCTCCGACTTTCCATATTAAATCAT
ACGTTCAAGATATGTCAAGTCAACCGTATCCCCGTATGTTTAGATTGGGT
CAACCTCTTGCAAATACATCTCCGACGAACCTGCTAGGCAAGATCTGCCA
GGTTTTGCTATATATACCCAAACACGCAAATTAATTGATGCTTGAAGAAT
GTTATAAGTAGATAAAGAGCAGATAGTAATCATACAATACTTGTTCTGCA
AATTCAACAGCTGAGAAAATTCAGTTCTTCAACTTCGGGGTGAGNNNNNN
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TTACGTTACCGCCCGCAGTATCTGGGACCCGAGTTTTGTTTCTACCCACT
TCCACAAGAACCTGGACCCCGAAGGTAGGTCTTTTTGATCTGGCGACCAT
TTTTAAACTCCAGTCGTCATGATCGCAAAGATTCGTGTTTACGGGTCATG
TGCTGTTAAGTGGTTGAACGACTATCTTAAGTGCCTTCTGAGTTCTACAA
GGCTAACCTTTCTTATTGATACCACTAATGTTTGAATAGTCTCCGACTTT
CCATATTAAATCATACGTTCAAGATATGTCAAGTTAACCGTATCCCCGTA
TGTTTAGATTGGGTCAACCTCTTGCAAATACATCTCCGACGAACCTGCTA
GGCAAGATCTGCCAGGTTTTGCTATATATACCCAAACACGCAAATTAATT
GATGCTTGAAGAATGTTATAAGTAGATAAAGAGCAGATAGTAATCATACA
ATACTTGTTCTGCAAATTCAACAGCTGAGAAAATTCAGTTCTTCAACTTC
GGGGTGAGTCAGGGAAAGCCGTGGCAGCCTTCCATGGACGTCATACATGA
GGCCGACAAGATCATTCCCGAGGGAGTACTGAGGCAGCCAGGTACGGCAA
TACTTAACGTTACGTGTCTTTTGTTGCAGCATTATTGTAAGGCGTTGTAG
TACTTGAGGTACTTCCGATTGAACAAGTTGCAATACGTTTAACTTCCGCA
TTAAGCCACAAACACAAAGGCACGAAAGAAGAGACTCGGTCTTAGTTGTT
AGGCCATGTTGATTTGATTATATGAATGACATCCTCTGGGGACCACAAAA
CTGATGCGAGCGTGCGAATAAAAAAAATGTTTGGCAAAAAAGTTGCCTTC
ATTATGAAATCTTCGTGGTTAGGAAGGATGAACAAAACCTATTATACAGA
GTATGCCTAAATATAGATTCATTATTGTTCTTTCAAAACTGCNAAAAAAA
GTTCGGCAAAAACAAAAGTTGCCTTCATTATGAAATTTACGTGGTCAGGA
AGGATGAACCAAACTTACACACAGAGTATGGTATATATACCGGATGATAA
ATTCTTCAGTTTTGTTATTCTTTGACTTTAGAATTGACATGGGCATTACT
CGATATTAGTATCCGTTTTCCGAAATGATTTTTTGGGGCAATATACAGCA
ATTGTTTCTCATTTTGCAGCTGCTTTGTATGATTTACAGTATGGCCGAAT
TTTTTTTTTTGGAAACGGACGAAAATTGGTGCGCGCGCGGATGTCATCCA
TGTAATGAAATAAAAATACCCTTACAAATATTTCTTTGTTTCTATTTGAT
ATCTCTAATAATGAAGTATATTGATATCTTATACATGTATGTTCTTATAG
GAGGGTTTGCCCAGGTCGCTGTCTCTGACCCTGCGCAGAAGCCGACACTT
TTCCCTTACGAGCGGCCCGCCACCTCCCGCTTTGTGGTCACCGCCTTTCA
GGTAACCTCCACTAACATTAATCCGCCGGGTTACATAAATCCGTCACTTT
GTAAAACAGTGCGTTTGAGAGATACATGTACATGTATCTAGTGCGGCACC
CACAAATAACGGCTGTTTGTGCCAAATAAGGCCAGCTCATTAATTATTCA
TAAGCAACTATCAATAACGTCGCCAGAAGCGAGTTCACAGGCTGGAAAGG
GCAGGGCCGCTATGGGAGGTAATGAACCGAGCATATCGGGCCTGCTGGGA
GGATACCCTCAGGTATGCACAGTTAAAATATACAGGAGTGCATTATACTG
GGGAACATAGGGTTGGAGATCTGTTTGGACATATATTTTCATGGTGGTGG
AATTGTATGTACCCTGGTTTAATTATATTAGTAAATGTTACACAGAACCA
AGATTTGATTATCATGGAAAATTACCCATATCACTATCAGACTGAAACGT
TGCATCCTAACGCGTACATTCAGTATATTGTTATGGTTTTCAACAATGAA
AACCGACATTTGTCCCTCCCTGACACGTTTCTTATTTACAATACAACTTA
TTTTCTCTTTGCATCATTTTTAAAAAGGTGCCCGACGCGGTGCCTGCCGA
AGAGTTCGAGGCTAACTGGAAGGACTGGAGCGGAGTTAGTCTCCTGGAGA
AAGAGGCGGCGCCTGAAACAGGCTACGCTCACTCCGCTCTCTACAAGAAA
GTGTCCCCCATGGGAGACTTCCGCTTCGTCACGCGCTCGGAGTTTTCCGG
GCTGCACGACAAGCACGACGATGGAATGAGGCTCGTCGGCAAAGTTCGTG
AGCGCTTCGGGTCCGGCTCGGCCGCTGCTCTTAATATCAAGAGCTACTCT
TCCTTGTTCAAGGTTGCTATTGATGTGCATCAGCCGGAATAG

Coding sequence (CDS) from alignment at Sc0000109:633022..638113-

>transcript:BL95764_evm0 ID=transcript:BL95764_evm0|Name=transcript:BL95764_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=693bp|location=Sequence derived from alignment at Sc0000109:633022..638113- (Branchiostoma lanceolatum)
ATGGCCGGTCGGCAGTTCATGTTTCTGTACAACTTCTGGAGCCTCCCGAA
GAGTGCTAACGTGGTGAAGTCATTGGAAGGATGGTTCTACGTTACCGCCC
GCAGTATCTGGGACCCGAGTTTTGTTTCTACCCACTTCCACAAGAACCTG
GACCCCGAAGCTGAGAAAATTCAGTTCTTCAACTTCGGGGTGAGTCAGGG
AAAGCCGTGGCAGCCTTCCATGGACGTCATACATGAGGCCGACAAGATCA
TTCCCGAGGGAGTACTGAGGCAGCCAGGAGGGTTTGCCCAGGTCGCTGTC
TCTGACCCTGCGCAGAAGCCGACACTTTTCCCTTACGAGCGGCCCGCCAC
CTCCCGCTTTGTGGTCACCGCCTTTCAGGTGCCCGACGCGGTGCCTGCCG
AAGAGTTCGAGGCTAACTGGAAGGACTGGAGCGGAGTTAGTCTCCTGGAG
AAAGAGGCGGCGCCTGAAACAGGCTACGCTCACTCCGCTCTCTACAAGAA
AGTGTCCCCCATGGGAGACTTCCGCTTCGTCACGCGCTCGGAGTTTTCCG
GGCTGCACGACAAGCACGACGATGGAATGAGGCTCGTCGGCAAAGTTCGT
GAGCGCTTCGGGTCCGGCTCGGCCGCTGCTCTTAATATCAAGAGCTACTC
TTCCTTGTTCAAGGTTGCTATTGATGTGCATCAGCCGGAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95764gene:BL95764Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95764_evm0-E1BL95764_evm0-E1-1564476830-311591Branchiostoma lanceolatumexon
BL95764_evm0-E2BL95764_evm0-E2-1564476830-311589Branchiostoma lanceolatumexon
BL95764_evm0-E3BL95764_evm0-E3-1564476830-311587Branchiostoma lanceolatumexon
BL95764_evm0-E4BL95764_evm0-E4-1564476830-311585Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95764_evm0transcript:BL95764_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000109genomeSc0000109:633022..638113 -
Properties
Property NameValue
Transcript idBL95764_evm0
Biotypeprotein_coding